Wall clock time and date at job start Wed Apr 1 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99866 * 2 1 4 4 H 1.48506 * 109.47435 * 269.99893 * 3 2 1 5 5 H 1.48497 * 109.47529 * 29.99921 * 3 2 1 6 6 H 1.48503 * 109.47257 * 149.99812 * 3 2 1 7 7 C 1.38815 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99582 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.47246 * 34.29643 * 10 9 7 12 12 C 1.56008 * 110.64151 * 271.57452 * 10 9 7 13 13 C 1.56336 * 105.76730 * 248.28062 * 12 10 9 14 14 C 1.51559 * 101.81725 * 25.43653 * 13 12 10 15 15 H 1.08998 * 111.11880 * 71.47039 * 14 13 12 16 16 C 1.51517 * 123.34883 * 207.98063 * 14 13 12 17 17 N 1.49621 * 102.49624 * 151.63801 * 16 14 13 18 18 C 1.34774 * 126.07053 * 154.35252 * 17 16 14 19 19 O 1.21561 * 119.99847 * 176.37541 * 18 17 16 20 20 C 1.47845 * 120.00261 * 356.37615 * 18 17 16 21 21 C 1.39604 * 120.13285 * 206.45276 * 20 18 17 22 22 C 1.37995 * 119.89674 * 179.80465 * 21 20 18 23 23 C 1.38139 * 120.10142 * 0.43254 * 22 21 20 24 24 C 1.38754 * 120.27831 * 359.81607 * 23 22 21 25 25 C 1.37704 * 120.18308 * 359.96600 * 24 23 22 26 26 C 1.51110 * 107.25582 * 179.97438 * 24 23 22 27 27 O 1.43928 * 105.95895 * 17.72206 * 26 24 23 28 28 C 1.43934 * 104.97065 * 331.48584 * 27 26 24 29 29 C 1.48094 * 107.63428 * 335.16925 * 17 16 14 30 30 C 1.49705 * 105.27384 * 352.32460 * 29 17 16 31 31 H 1.09004 * 108.53901 * 282.93323 * 30 29 17 32 32 H 0.96996 * 120.00116 * 0.02562 * 1 2 3 33 33 H 0.96996 * 120.00741 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.19087 * 7.35499 * 12 10 9 35 35 H 1.09001 * 110.18883 * 129.20209 * 12 10 9 36 36 H 1.09001 * 110.95783 * 267.30240 * 13 12 10 37 37 H 1.09001 * 110.99013 * 143.58507 * 13 12 10 38 38 H 1.08996 * 110.80573 * 269.89363 * 16 14 13 39 39 H 1.09007 * 110.80510 * 33.38677 * 16 14 13 40 40 H 1.08007 * 120.05126 * 359.97438 * 21 20 18 41 41 H 1.07994 * 119.95168 * 180.23360 * 22 21 20 42 42 H 1.07998 * 120.09710 * 179.97438 * 25 24 23 43 43 H 1.09002 * 110.15190 * 136.84352 * 26 24 23 44 44 H 1.08994 * 110.16120 * 258.59695 * 26 24 23 45 45 H 1.08992 * 110.15590 * 147.64517 * 28 27 26 46 46 H 1.09005 * 110.14670 * 269.32434 * 28 27 26 47 47 H 1.09001 * 109.83854 * 233.47211 * 29 17 16 48 48 H 1.08994 * 110.37558 * 111.45745 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9788 -3.5654 0.5745 12 6 2.3690 -4.1124 -1.4609 13 6 1.4993 -5.3890 -1.7018 14 6 0.3630 -5.1800 -0.7210 15 1 -0.2981 -4.3787 -1.0508 16 6 -0.4137 -6.3184 -0.0912 17 7 -0.8483 -5.7306 1.2142 18 6 -1.9267 -6.1024 1.9321 19 8 -2.1412 -5.5930 3.0148 20 6 -2.8488 -7.1298 1.4029 21 6 -4.1865 -7.1432 1.8018 22 6 -5.0439 -8.1019 1.3017 23 6 -4.5781 -9.0527 0.4145 24 6 -3.2485 -9.0479 0.0180 25 6 -2.3839 -8.0939 0.5064 26 6 -3.0628 -10.1999 -0.9421 27 8 -4.3836 -10.5655 -1.3817 28 6 -5.2510 -10.2083 -0.2901 29 6 0.1085 -4.6553 1.5628 30 6 1.2029 -4.7566 0.5464 31 1 1.8457 -5.5961 0.8117 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 -0.0023 34 1 2.0913 -3.3294 -2.1667 35 1 3.4272 -4.3532 -1.5625 36 1 2.0595 -6.2931 -1.4628 37 1 1.1291 -5.4216 -2.7265 38 1 -1.2762 -6.5836 -0.7027 39 1 0.2293 -7.1839 0.0689 40 1 -4.5505 -6.4027 2.4988 41 1 -6.0798 -8.1107 1.6068 42 1 -1.3491 -8.0917 0.1972 43 1 -2.4573 -9.8862 -1.7924 44 1 -2.5903 -11.0403 -0.4336 45 1 -6.2253 -9.9008 -0.6696 46 1 -5.3630 -11.0514 0.3918 47 1 0.5039 -4.8225 2.5647 48 1 -0.3769 -3.6813 1.5026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026374388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:35 Heat of formation + Delta-G solvation = -0.297460 kcal Electronic energy + Delta-G solvation = -29918.123511 eV Core-core repulsion = 25939.312700 eV Total energy + Delta-G solvation = -3978.810811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24110 -40.48044 -38.83593 -37.18600 -35.38302 -33.37436 -32.22386 -31.72560 -30.86918 -29.57093 -28.56457 -28.09254 -25.61254 -25.51711 -23.68154 -23.25277 -22.11220 -21.91292 -20.10423 -19.50508 -18.85709 -17.55166 -17.20301 -16.91886 -16.72204 -16.33424 -16.05366 -15.21255 -15.09215 -14.88625 -14.53187 -14.32074 -14.18121 -13.77905 -13.70361 -13.54172 -13.29855 -12.97299 -12.85031 -12.64678 -12.59219 -12.44180 -11.98860 -11.85893 -11.47356 -11.38768 -11.08860 -10.97963 -10.84822 -10.72446 -10.50296 -10.45755 -10.30705 -10.10432 -9.88328 -9.67611 -9.60096 -9.23149 -8.94832 -8.92870 -8.54629 -6.99192 -5.78557 -3.07925 0.54059 0.95254 2.66821 2.86884 3.42433 3.47949 3.49433 3.49744 3.51679 3.76675 4.11543 4.19512 4.42461 4.54858 4.57656 4.86445 4.90978 4.93172 4.97687 5.00524 5.09786 5.13668 5.23371 5.28366 5.32751 5.40506 5.42265 5.53381 5.57473 5.59731 5.74114 5.80479 5.85410 5.87699 5.91115 5.97337 6.01093 6.14358 6.23303 6.25357 6.27866 6.34768 6.41315 6.48657 6.51089 6.62876 6.78147 7.02087 7.52499 7.69298 8.16363 8.39510 9.50961 10.07104 10.41596 11.43728 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002597 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.630661 B =10779.934855 C =11522.544660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.098 4.098 14 C -0.128 4.128 15 H 0.095 0.905 16 C 0.107 3.893 17 N -0.613 5.613 18 C 0.572 3.428 19 O -0.535 6.535 20 C -0.116 4.116 21 C -0.056 4.056 22 C -0.100 4.100 23 C -0.115 4.115 24 C -0.142 4.142 25 C -0.073 4.073 26 C 0.093 3.907 27 O -0.360 6.360 28 C 0.089 3.911 29 C 0.131 3.869 30 C -0.119 4.119 31 H 0.069 0.931 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.144 0.856 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -23.133 -1.878 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.136 4.136 14 C -0.147 4.147 15 H 0.114 0.886 16 C -0.014 4.014 17 N -0.347 5.347 18 C 0.360 3.640 19 O -0.413 6.413 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.142 4.142 25 C -0.092 4.092 26 C 0.016 3.984 27 O -0.279 6.279 28 C 0.013 3.987 29 C 0.010 3.990 30 C -0.139 4.139 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.523 -22.822 -1.409 23.778 hybrid contribution 0.203 1.088 0.138 1.115 sum -6.321 -21.734 -1.271 22.670 Atomic orbital electron populations 1.69653 1.05103 1.25730 1.57436 1.24743 0.95477 0.97698 1.02875 0.86214 0.78681 0.83965 0.77446 1.21789 1.21828 1.20767 1.19235 0.91010 0.84064 1.42926 0.91106 1.42431 1.05704 0.99576 1.88209 1.20023 0.93773 0.85187 0.92476 0.92584 1.23863 0.97954 0.96203 1.00587 1.21821 0.95309 0.98646 0.97843 1.22686 0.97254 0.98047 0.96719 0.88645 1.22145 0.98776 0.96147 0.84346 1.49409 1.26151 1.36673 1.22460 1.17808 0.79869 0.82079 0.84206 1.90806 1.73487 1.56255 1.20704 1.19894 0.94911 0.97407 0.99643 1.21259 0.91617 0.97514 0.97138 1.20355 1.00236 0.94002 0.97212 1.21274 0.95512 0.96898 0.97829 1.20957 0.94738 0.97883 1.00638 1.21058 1.00571 0.92636 0.94891 1.21760 0.86038 0.93693 0.96876 1.89094 1.16895 1.83839 1.38040 1.21806 0.94569 0.93814 0.88499 1.20768 0.89288 0.90954 0.97977 1.22055 0.96265 1.00931 0.94641 0.91219 0.93473 0.78121 0.90525 0.92799 0.91981 0.92005 0.89987 0.90726 0.84100 0.84913 0.83876 0.88151 0.90328 0.88211 0.90225 0.91199 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -16.96 4.90 -53.44 -0.26 -17.22 16 10 C 0.20 3.59 3.45 -67.95 -0.23 3.36 16 11 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 12 C -0.15 -2.29 6.74 -23.33 -0.16 -2.44 16 13 C -0.10 -1.21 6.62 -25.67 -0.17 -1.38 16 14 C -0.13 -1.75 3.06 -89.45 -0.27 -2.02 16 15 H 0.10 1.58 7.93 -51.93 -0.41 1.17 16 16 C 0.11 1.24 4.72 -3.05 -0.01 1.23 16 17 N -0.61 -9.16 3.40 -173.71 -0.59 -9.75 16 18 C 0.57 9.18 7.67 -12.33 -0.09 9.08 16 19 O -0.53 -10.52 17.01 5.31 0.09 -10.43 16 20 C -0.12 -1.49 5.73 -104.94 -0.60 -2.09 16 21 C -0.06 -0.66 9.59 -39.16 -0.38 -1.03 16 22 C -0.10 -0.93 10.03 -39.71 -0.40 -1.33 16 23 C -0.11 -1.06 6.33 -104.25 -0.66 -1.72 16 24 C -0.14 -1.35 6.31 -104.43 -0.66 -2.01 16 25 C -0.07 -0.76 7.95 -39.26 -0.31 -1.08 16 26 C 0.09 0.72 7.63 36.21 0.28 1.00 16 27 O -0.36 -3.38 11.72 -35.23 -0.41 -3.79 16 28 C 0.09 0.67 7.63 36.22 0.28 0.95 16 29 C 0.13 2.22 6.55 -4.80 -0.03 2.19 16 30 C -0.12 -1.82 2.32 -91.23 -0.21 -2.04 16 31 H 0.07 0.94 7.99 -51.93 -0.42 0.52 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.38 9.78 6.64 -40.82 -0.27 9.51 16 34 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.86 6.16 -51.93 -0.32 0.54 16 39 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 40 H 0.14 1.63 7.87 -52.48 -0.41 1.21 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 1.26 4.59 -52.49 -0.24 1.02 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.08 1.73 7.12 -51.93 -0.37 1.36 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -32.55 379.93 -10.65 -43.20 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.01 Total: 8.53 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.89 Total: -6.35 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.13 Total: -54.01 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.32 Total: -14.22 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.55 -10.65 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026374388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.906 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds