Wall clock time and date at job start Wed Apr 1 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99866 * 2 1 4 4 H 1.48506 * 109.47435 * 269.99893 * 3 2 1 5 5 H 1.48497 * 109.47529 * 29.99921 * 3 2 1 6 6 H 1.48503 * 109.47257 * 149.99812 * 3 2 1 7 7 C 1.38815 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99582 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.47246 * 34.29643 * 10 9 7 12 12 C 1.56008 * 110.64151 * 271.57452 * 10 9 7 13 13 C 1.56336 * 105.76730 * 248.28062 * 12 10 9 14 14 C 1.51559 * 101.81725 * 25.43653 * 13 12 10 15 15 H 1.08998 * 111.11880 * 71.47039 * 14 13 12 16 16 C 1.51517 * 123.34883 * 207.98063 * 14 13 12 17 17 N 1.49621 * 102.49624 * 151.63801 * 16 14 13 18 18 C 1.34774 * 126.07053 * 154.35252 * 17 16 14 19 19 O 1.21561 * 119.99847 * 176.37541 * 18 17 16 20 20 C 1.47845 * 120.00261 * 356.37615 * 18 17 16 21 21 C 1.39604 * 120.13285 * 206.45276 * 20 18 17 22 22 C 1.37995 * 119.89674 * 179.80465 * 21 20 18 23 23 C 1.38139 * 120.10142 * 0.43254 * 22 21 20 24 24 C 1.38754 * 120.27831 * 359.81607 * 23 22 21 25 25 C 1.37704 * 120.18308 * 359.96600 * 24 23 22 26 26 C 1.51110 * 107.25582 * 179.97438 * 24 23 22 27 27 O 1.43928 * 105.95895 * 17.72206 * 26 24 23 28 28 C 1.43934 * 104.97065 * 331.48584 * 27 26 24 29 29 C 1.48094 * 107.63428 * 335.16925 * 17 16 14 30 30 C 1.49705 * 105.27384 * 352.32460 * 29 17 16 31 31 H 1.09004 * 108.53901 * 282.93323 * 30 29 17 32 32 H 0.96996 * 120.00116 * 0.02562 * 1 2 3 33 33 H 0.96996 * 120.00741 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.19087 * 7.35499 * 12 10 9 35 35 H 1.09001 * 110.18883 * 129.20209 * 12 10 9 36 36 H 1.09001 * 110.95783 * 267.30240 * 13 12 10 37 37 H 1.09001 * 110.99013 * 143.58507 * 13 12 10 38 38 H 1.08996 * 110.80573 * 269.89363 * 16 14 13 39 39 H 1.09007 * 110.80510 * 33.38677 * 16 14 13 40 40 H 1.08007 * 120.05126 * 359.97438 * 21 20 18 41 41 H 1.07994 * 119.95168 * 180.23360 * 22 21 20 42 42 H 1.07998 * 120.09710 * 179.97438 * 25 24 23 43 43 H 1.09002 * 110.15190 * 136.84352 * 26 24 23 44 44 H 1.08994 * 110.16120 * 258.59695 * 26 24 23 45 45 H 1.08992 * 110.15590 * 147.64517 * 28 27 26 46 46 H 1.09005 * 110.14670 * 269.32434 * 28 27 26 47 47 H 1.09001 * 109.83854 * 233.47211 * 29 17 16 48 48 H 1.08994 * 110.37558 * 111.45745 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9788 -3.5654 0.5745 12 6 2.3690 -4.1124 -1.4609 13 6 1.4993 -5.3890 -1.7018 14 6 0.3630 -5.1800 -0.7210 15 1 -0.2981 -4.3787 -1.0508 16 6 -0.4137 -6.3184 -0.0912 17 7 -0.8483 -5.7306 1.2142 18 6 -1.9267 -6.1024 1.9321 19 8 -2.1412 -5.5930 3.0148 20 6 -2.8488 -7.1298 1.4029 21 6 -4.1865 -7.1432 1.8018 22 6 -5.0439 -8.1019 1.3017 23 6 -4.5781 -9.0527 0.4145 24 6 -3.2485 -9.0479 0.0180 25 6 -2.3839 -8.0939 0.5064 26 6 -3.0628 -10.1999 -0.9421 27 8 -4.3836 -10.5655 -1.3817 28 6 -5.2510 -10.2083 -0.2901 29 6 0.1085 -4.6553 1.5628 30 6 1.2029 -4.7566 0.5464 31 1 1.8457 -5.5961 0.8117 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 -0.0023 34 1 2.0913 -3.3294 -2.1667 35 1 3.4272 -4.3532 -1.5625 36 1 2.0595 -6.2931 -1.4628 37 1 1.1291 -5.4216 -2.7265 38 1 -1.2762 -6.5836 -0.7027 39 1 0.2293 -7.1839 0.0689 40 1 -4.5505 -6.4027 2.4988 41 1 -6.0798 -8.1107 1.6068 42 1 -1.3491 -8.0917 0.1972 43 1 -2.4573 -9.8862 -1.7924 44 1 -2.5903 -11.0403 -0.4336 45 1 -6.2253 -9.9008 -0.6696 46 1 -5.3630 -11.0514 0.3918 47 1 0.5039 -4.8225 2.5647 48 1 -0.3769 -3.6813 1.5026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026374388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:34 Heat of formation + Delta-G solvation = -21.234265 kcal Electronic energy + Delta-G solvation = -29919.031399 eV Core-core repulsion = 25939.312700 eV Total energy + Delta-G solvation = -3979.718699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19591 -41.44650 -40.00198 -38.04032 -36.83344 -35.11336 -33.07390 -32.60730 -32.48910 -30.72173 -29.95185 -28.83201 -27.04008 -26.35120 -25.19210 -24.64044 -22.90875 -22.80104 -21.18523 -20.59020 -20.26595 -19.40756 -18.28014 -17.89897 -17.39935 -17.27478 -16.96777 -16.69390 -16.26875 -15.98566 -15.96723 -15.47567 -15.32165 -15.02853 -14.89915 -14.61128 -14.38627 -14.05407 -13.80104 -13.72789 -13.52973 -13.41207 -13.23191 -13.05099 -12.85267 -12.71490 -12.60554 -12.37224 -12.25421 -12.06355 -11.96653 -11.85878 -11.51154 -11.38709 -11.15485 -11.06251 -10.94444 -10.87257 -10.01083 -9.90176 -9.59757 -8.98034 -7.93496 -5.20961 -0.31862 0.19751 1.45751 1.47153 1.55324 1.56091 1.74236 2.56283 2.60076 2.91956 2.95532 3.05951 3.40649 3.44683 3.57407 3.73382 3.77380 3.93582 4.04340 4.16591 4.18557 4.24610 4.31575 4.36390 4.39998 4.46454 4.47085 4.57559 4.58781 4.64317 4.70370 4.72616 4.77240 4.83965 4.85254 4.91402 4.98770 5.06141 5.09507 5.16014 5.19711 5.23913 5.28511 5.38513 5.45066 5.53824 5.62927 5.69650 5.75117 6.28802 6.34857 6.93550 7.34612 8.12968 8.33870 9.30068 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002597 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.630661 B =10779.934855 C =11522.544660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.731 5.731 10 C 0.183 3.817 11 H 0.052 0.948 12 C -0.139 4.139 13 C -0.082 4.082 14 C -0.115 4.115 15 H 0.055 0.945 16 C 0.112 3.888 17 N -0.613 5.613 18 C 0.565 3.435 19 O -0.587 6.587 20 C -0.139 4.139 21 C -0.074 4.074 22 C -0.096 4.096 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.068 4.068 26 C 0.092 3.908 27 O -0.378 6.378 28 C 0.089 3.911 29 C 0.135 3.865 30 C -0.120 4.120 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.370 0.630 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -27.030 -3.629 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.371 5.371 10 C 0.074 3.926 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.119 4.119 14 C -0.135 4.135 15 H 0.074 0.926 16 C -0.008 4.008 17 N -0.345 5.345 18 C 0.356 3.644 19 O -0.469 6.469 20 C -0.142 4.142 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.086 4.086 26 C 0.017 3.983 27 O -0.297 6.297 28 C 0.013 3.987 29 C 0.013 3.987 30 C -0.140 4.140 31 H 0.124 0.876 32 H 0.056 0.944 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.177 0.823 42 H 0.180 0.820 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.080 0.920 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.423 -26.781 -3.200 27.511 hybrid contribution -0.134 2.219 0.699 2.330 sum -5.557 -24.562 -2.502 25.307 Atomic orbital electron populations 1.69828 1.06691 1.25742 1.60136 1.25528 0.96243 1.01054 1.04356 0.85193 0.77728 0.79865 0.77330 1.21460 1.22869 1.19322 1.19655 0.91486 0.85246 1.40011 0.90347 1.42630 1.05274 1.00912 1.88325 1.20376 0.93644 0.83902 0.94651 0.92989 1.23656 1.00108 0.97089 0.97067 1.21784 0.93924 0.98119 0.98118 1.22604 0.96957 0.97784 0.96130 0.92627 1.22421 0.99787 0.96185 0.82380 1.49470 1.25537 1.35945 1.23575 1.18447 0.80052 0.82256 0.83654 1.90761 1.74660 1.58417 1.23091 1.19715 0.94706 0.97941 1.01800 1.21318 0.91906 0.98374 0.97689 1.20553 1.01073 0.93058 0.96733 1.21640 0.95902 0.96928 0.97015 1.21249 0.94656 0.97997 1.00581 1.21117 1.01616 0.91911 0.93977 1.21941 0.85789 0.93438 0.97169 1.89084 1.17751 1.83990 1.38891 1.21987 0.94691 0.93620 0.88408 1.20526 0.90023 0.89669 0.98488 1.21921 0.96238 1.00748 0.95068 0.87591 0.94363 0.79740 0.93878 0.90526 0.87949 0.90650 0.88350 0.86493 0.85396 0.82322 0.81993 0.86548 0.88409 0.86718 0.88230 0.92012 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.23 -12.72 9.97 84.03 0.84 -11.89 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -35.98 4.90 -323.00 -1.58 -37.56 16 10 C 0.18 6.66 3.45 44.98 0.16 6.81 16 11 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 12 C -0.14 -4.12 6.74 32.80 0.22 -3.89 16 13 C -0.08 -1.70 6.62 31.28 0.21 -1.49 16 14 C -0.12 -2.95 3.06 -10.04 -0.03 -2.98 16 15 H 0.06 1.89 7.93 -2.39 -0.02 1.87 16 16 C 0.11 2.28 4.72 85.29 0.40 2.68 16 17 N -0.61 -18.43 3.40 -821.76 -2.80 -21.22 16 18 C 0.56 18.86 7.67 86.79 0.67 19.52 16 19 O -0.59 -24.88 17.01 -3.91 -0.07 -24.95 16 20 C -0.14 -3.54 5.73 -20.07 -0.12 -3.66 16 21 C -0.07 -1.74 9.59 22.54 0.22 -1.53 16 22 C -0.10 -1.64 10.03 22.19 0.22 -1.42 16 23 C -0.11 -1.79 6.33 -19.62 -0.12 -1.92 16 24 C -0.14 -2.29 6.31 -19.74 -0.12 -2.42 16 25 C -0.07 -1.25 7.95 22.48 0.18 -1.07 16 26 C 0.09 1.06 7.63 71.37 0.54 1.61 16 27 O -0.38 -5.72 11.72 -148.98 -1.75 -7.47 16 28 C 0.09 1.01 7.63 71.38 0.54 1.56 16 29 C 0.14 4.79 6.55 85.02 0.56 5.35 16 30 C -0.12 -3.58 2.32 -11.19 -0.03 -3.60 16 31 H 0.11 2.47 7.99 -2.38 -0.02 2.45 16 32 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.37 20.15 6.64 -92.71 -0.62 19.53 16 34 H 0.04 1.57 7.99 -2.38 -0.02 1.55 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.75 6.16 -2.39 -0.01 1.74 16 39 H 0.12 1.51 7.45 -2.38 -0.02 1.49 16 40 H 0.13 3.23 7.87 -2.91 -0.02 3.21 16 41 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.16 2.20 4.59 -2.91 -0.01 2.19 16 43 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.04 1.63 7.12 -2.39 -0.02 1.62 16 Total: -1.00 -77.28 379.93 1.29 -75.99 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.37 Total: 29.54 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.80 Total: -2.52 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -4.10 Total: -119.46 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.81 Total: -32.42 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.28 1.29 -75.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026374388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.758 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds