Wall clock time and date at job start Wed Apr 1 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28783 * 125.87219 * 2 1 4 4 N 1.28683 * 111.75969 * 179.97438 * 3 2 1 5 5 C 1.34396 * 109.15569 * 359.73212 * 4 3 2 6 6 C 1.37215 * 125.86820 * 179.97438 * 2 1 3 7 7 N 1.32208 * 134.67583 * 0.03960 * 6 2 1 8 8 C 1.31582 * 121.86906 * 179.97438 * 7 6 2 9 9 C 1.38623 * 121.63449 * 359.97438 * 8 7 6 10 10 C 1.39447 * 119.37402 * 0.02562 * 9 8 7 11 11 C 1.47875 * 121.11253 * 180.02562 * 10 9 8 12 12 O 1.21553 * 120.00176 * 145.98445 * 11 10 9 13 13 N 1.34779 * 120.00144 * 325.97964 * 11 10 9 14 14 C 1.47158 * 120.70870 * 185.40852 * 13 11 10 15 15 C 1.53893 * 108.03169 * 132.73876 * 14 13 11 16 16 H 1.08996 * 112.09820 * 181.90491 * 15 14 13 17 17 C 1.54543 * 108.36579 * 306.24883 * 15 14 13 18 18 C 1.54829 * 104.74041 * 89.17138 * 17 15 14 19 19 C 1.54542 * 104.74619 * 0.02562 * 18 17 15 20 20 H 1.09003 * 112.67921 * 146.80947 * 19 18 17 21 21 C 1.47163 * 120.70926 * 5.39093 * 13 11 10 22 22 N 1.48304 * 104.35800 * 24.82486 * 19 18 17 23 23 C 1.36935 * 128.07802 * 139.08150 * 22 19 18 24 24 H 1.08002 * 119.99832 * 344.78369 * 23 22 19 25 25 C 1.38812 * 120.00004 * 164.77476 * 23 22 19 26 26 N 1.31614 * 120.00208 * 350.72451 * 25 23 22 27 27 Si 1.86800 * 119.99806 * 170.72606 * 25 23 22 28 28 H 1.48501 * 109.47045 * 269.99963 * 27 25 23 29 29 H 1.48499 * 109.47572 * 30.00109 * 27 25 23 30 30 H 1.48505 * 109.47034 * 150.00043 * 27 25 23 31 31 H 1.09000 * 109.47508 * 270.02405 * 1 2 3 32 32 H 1.09000 * 109.46842 * 30.03231 * 1 2 3 33 33 H 1.09009 * 109.46733 * 150.02495 * 1 2 3 34 34 H 1.08000 * 119.18361 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.30757 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.75205 * 13.10507 * 14 13 11 37 37 H 1.09002 * 109.79572 * 252.39261 * 14 13 11 38 38 H 1.09003 * 110.36221 * 208.13718 * 17 15 14 39 39 H 1.08992 * 110.36669 * 330.45288 * 17 15 14 40 40 H 1.09002 * 110.31021 * 241.23898 * 18 17 15 41 41 H 1.09009 * 110.61066 * 118.91373 * 18 17 15 42 42 H 1.09001 * 109.74788 * 346.89504 * 21 13 11 43 43 H 1.09001 * 109.75236 * 107.57728 * 21 13 11 44 44 H 0.97001 * 120.00240 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0436 0.0000 4 7 3.4676 0.7298 0.0005 5 6 3.5858 -0.6089 0.0069 6 6 2.2690 -1.1119 0.0005 7 7 2.0518 -2.4161 0.0004 8 6 3.0399 -3.2849 0.0005 9 6 4.3653 -2.8787 0.0002 10 6 4.6631 -1.5164 0.0002 11 6 6.0632 -1.0404 -0.0007 12 8 6.3573 -0.0185 -0.5896 13 7 7.0131 -1.7395 0.6515 14 6 8.3859 -1.2207 0.7612 15 6 8.8325 -1.3613 2.2271 16 1 9.8343 -0.9639 2.3904 17 6 7.7788 -0.6747 3.1252 18 6 6.7473 -1.7851 3.4418 19 6 7.2773 -3.0359 2.7050 20 1 7.0545 -3.9619 3.2353 21 6 6.6997 -3.0378 1.2694 22 7 8.7359 -2.7988 2.5802 23 6 9.7551 -3.6982 2.7460 24 1 9.5667 -4.6441 3.2321 25 6 11.0301 -3.3944 2.2891 26 7 11.2243 -2.3305 1.5389 27 14 12.4705 -4.4955 2.7390 28 1 13.0805 -4.0194 4.0064 29 1 11.9917 -5.8903 2.9135 30 1 13.4843 -4.4522 1.6547 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 2.8128 -4.3408 0.0000 35 1 5.1596 -3.6104 -0.0002 36 1 8.4074 -0.1709 0.4687 37 1 9.0506 -1.7962 0.1169 38 1 8.2417 -0.3104 4.0424 39 1 7.3000 0.1449 2.5896 40 1 5.7643 -1.5080 3.0608 41 1 6.6991 -1.9694 4.5151 42 1 5.6191 -3.1755 1.3091 43 1 7.1522 -3.8413 0.6882 44 1 12.1154 -2.1180 1.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029443895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:51 Heat of formation + Delta-G solvation = 168.883119 kcal Electronic energy + Delta-G solvation = -30863.520546 eV Core-core repulsion = 26820.798363 eV Total energy + Delta-G solvation = -4042.722183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.48476 -40.42017 -38.95352 -37.71522 -35.17638 -34.12623 -32.63349 -32.23998 -31.03151 -30.38086 -29.27443 -28.19386 -26.79196 -25.24429 -24.48539 -23.72717 -23.49348 -22.09100 -20.00151 -19.68071 -19.14935 -18.85657 -17.61801 -17.34854 -17.10757 -16.37987 -15.63399 -15.48790 -15.16833 -14.85667 -14.56608 -14.14117 -13.84587 -13.71064 -13.52086 -13.20966 -13.04830 -13.01725 -12.88442 -12.60497 -12.38088 -11.87087 -11.78619 -11.66067 -11.50346 -11.27379 -10.98928 -10.89256 -10.80808 -10.39266 -10.10473 -10.05028 -9.90104 -9.74058 -9.61635 -9.38805 -9.23976 -8.96121 -8.80447 -8.13359 -6.88728 -5.87810 -3.23897 0.01515 0.73844 1.72052 2.11006 2.92741 3.25094 3.33324 3.39113 3.41284 3.46362 3.60099 4.07347 4.19254 4.36819 4.39907 4.44832 4.67194 4.81855 4.95717 5.02287 5.08934 5.27956 5.35492 5.41866 5.51371 5.60746 5.66518 5.69250 5.75529 5.89382 5.98430 6.12085 6.18973 6.27124 6.34182 6.49045 6.59641 6.64905 6.76422 6.82719 6.91075 7.25224 7.31480 7.45713 7.65630 7.92421 8.09390 8.09810 8.53696 9.01097 9.63543 10.39590 11.24856 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.003173 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.729887 B = 8823.129276 C = 9157.141670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.314 5.314 3 N -0.010 5.010 4 N -0.218 5.218 5 C 0.000 4.000 6 C 0.209 3.791 7 N -0.465 5.465 8 C 0.159 3.841 9 C -0.160 4.160 10 C 0.005 3.995 11 C 0.543 3.457 12 O -0.524 6.524 13 N -0.577 5.577 14 C 0.114 3.886 15 C 0.167 3.833 16 H 0.120 0.880 17 C -0.137 4.137 18 C -0.122 4.122 19 C 0.135 3.865 20 H 0.080 0.920 21 C 0.063 3.937 22 N -0.584 5.584 23 C -0.229 4.229 24 H 0.077 0.923 25 C -0.002 4.002 26 N -0.912 5.912 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.281 1.281 30 H -0.291 1.291 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.994 -2.034 -1.455 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.115 5.115 3 N 0.009 4.991 4 N -0.092 5.092 5 C -0.129 4.129 6 C -0.033 4.033 7 N -0.178 5.178 8 C -0.013 4.013 9 C -0.183 4.183 10 C -0.011 4.011 11 C 0.329 3.671 12 O -0.401 6.401 13 N -0.309 5.309 14 C -0.009 4.009 15 C 0.060 3.940 16 H 0.138 0.862 17 C -0.176 4.176 18 C -0.161 4.161 19 C 0.026 3.974 20 H 0.098 0.902 21 C -0.061 4.061 22 N -0.305 5.305 23 C -0.357 4.357 24 H 0.095 0.905 25 C -0.199 4.199 26 N -0.557 5.557 27 Si 0.743 3.257 28 H -0.216 1.216 29 H -0.207 1.207 30 H -0.217 1.217 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.198 0.802 35 H 0.192 0.808 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.455 -0.176 -1.811 20.535 hybrid contribution 1.270 -1.425 0.171 1.916 sum -19.184 -1.600 -1.640 19.321 Atomic orbital electron populations 1.22246 0.71562 1.05951 1.05019 1.46977 1.08998 1.02055 1.53510 1.78232 0.97090 1.11045 1.12750 1.75493 1.06601 1.10954 1.16156 1.20097 0.93245 0.92275 1.07254 1.19764 0.88417 0.89472 1.05613 1.66250 1.37802 0.98983 1.14815 1.22842 0.86908 0.98854 0.92709 1.22934 0.99490 0.95337 1.00554 1.19772 0.93380 0.91870 0.96089 1.17894 0.83780 0.84458 0.80994 1.90811 1.81437 1.24292 1.43536 1.48138 1.10849 1.20336 1.51548 1.22537 0.78634 0.98782 1.00901 1.21908 0.98240 0.84770 0.89093 0.86207 1.22728 0.97648 0.97170 1.00072 1.22535 0.97498 0.96624 0.99455 1.22128 0.86897 0.96463 0.91950 0.90185 1.23553 1.00037 0.84914 0.97622 1.45204 0.98842 1.05559 1.80858 1.18991 0.87131 0.98036 1.31537 0.90507 1.24843 0.98083 0.98446 0.98541 1.69826 1.21464 1.27552 1.36901 0.86128 0.82319 0.79719 0.77562 1.21587 1.20666 1.21728 0.89192 0.87908 0.88040 0.80175 0.80798 0.91090 0.89716 0.92641 0.92813 0.93339 0.92519 0.89679 0.90694 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.41 59.85 0.68 1.25 16 2 N -0.31 -3.81 3.80 -67.22 -0.26 -4.07 16 3 N -0.01 -0.14 13.07 60.35 0.79 0.64 16 4 N -0.22 -3.94 12.36 32.23 0.40 -3.54 16 5 C 0.00 0.01 7.00 -84.72 -0.59 -0.59 16 6 C 0.21 2.87 8.08 -156.20 -1.26 1.60 16 7 N -0.46 -5.36 10.35 -12.38 -0.13 -5.49 16 8 C 0.16 1.47 11.14 -17.52 -0.20 1.28 16 9 C -0.16 -1.80 7.56 -38.99 -0.29 -2.09 16 10 C 0.01 0.08 5.55 -104.51 -0.58 -0.50 16 11 C 0.54 10.39 7.48 -12.31 -0.09 10.29 16 12 O -0.52 -11.93 16.35 5.32 0.09 -11.84 16 13 N -0.58 -10.78 2.28 -172.09 -0.39 -11.17 16 14 C 0.11 2.46 5.80 -3.22 -0.02 2.44 16 15 C 0.17 3.72 3.09 -65.64 -0.20 3.51 16 16 H 0.12 3.04 6.35 -51.93 -0.33 2.71 16 17 C -0.14 -2.67 6.23 -24.96 -0.16 -2.82 16 18 C -0.12 -2.12 6.24 -24.96 -0.16 -2.27 16 19 C 0.13 2.42 4.32 -65.21 -0.28 2.14 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.06 1.01 4.43 -2.76 -0.01 1.00 16 22 N -0.58 -13.21 2.80 -152.08 -0.43 -13.63 16 23 C -0.23 -5.73 10.37 -15.06 -0.16 -5.89 16 24 H 0.08 1.87 7.85 -52.49 -0.41 1.45 16 25 C 0.00 -0.04 5.42 -17.43 -0.09 -0.14 16 26 N -0.91 -24.45 10.35 55.49 0.57 -23.87 16 27 Si 0.91 20.69 29.56 -169.99 -5.03 15.67 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.18 1.64 5.36 -52.49 -0.28 1.36 16 36 H 0.07 1.58 7.16 -51.93 -0.37 1.21 16 37 H 0.08 2.06 7.78 -51.93 -0.40 1.65 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.06 7.86 -51.93 -0.41 0.65 16 40 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 41 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.09 1.07 3.83 -51.93 -0.20 0.87 16 43 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -33.31 353.74 -7.79 -41.10 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.33 Total: 1.65 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -3.41 Total: 9.23 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.56 Total: -61.13 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.31 -7.79 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029443895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.981 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds