Wall clock time and date at job start Wed Apr 1 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28783 * 125.87219 * 2 1 4 4 N 1.28683 * 111.75969 * 179.97438 * 3 2 1 5 5 C 1.34396 * 109.15569 * 359.73212 * 4 3 2 6 6 C 1.37215 * 125.86820 * 179.97438 * 2 1 3 7 7 N 1.32208 * 134.67583 * 0.03960 * 6 2 1 8 8 C 1.31582 * 121.86906 * 179.97438 * 7 6 2 9 9 C 1.38623 * 121.63449 * 359.97438 * 8 7 6 10 10 C 1.39447 * 119.37402 * 0.02562 * 9 8 7 11 11 C 1.47875 * 121.11253 * 180.02562 * 10 9 8 12 12 O 1.21553 * 120.00176 * 145.98445 * 11 10 9 13 13 N 1.34779 * 120.00144 * 325.97964 * 11 10 9 14 14 C 1.47158 * 120.70870 * 185.40852 * 13 11 10 15 15 C 1.53893 * 108.03169 * 132.73876 * 14 13 11 16 16 H 1.08996 * 112.09820 * 181.90491 * 15 14 13 17 17 C 1.54543 * 108.36579 * 306.24883 * 15 14 13 18 18 C 1.54829 * 104.74041 * 89.17138 * 17 15 14 19 19 C 1.54542 * 104.74619 * 0.02562 * 18 17 15 20 20 H 1.09003 * 112.67921 * 146.80947 * 19 18 17 21 21 C 1.47163 * 120.70926 * 5.39093 * 13 11 10 22 22 N 1.48304 * 104.35800 * 24.82486 * 19 18 17 23 23 C 1.36935 * 128.07802 * 139.08150 * 22 19 18 24 24 H 1.08002 * 119.99832 * 344.78369 * 23 22 19 25 25 C 1.38812 * 120.00004 * 164.77476 * 23 22 19 26 26 N 1.31614 * 120.00208 * 350.72451 * 25 23 22 27 27 Si 1.86800 * 119.99806 * 170.72606 * 25 23 22 28 28 H 1.48501 * 109.47045 * 269.99963 * 27 25 23 29 29 H 1.48499 * 109.47572 * 30.00109 * 27 25 23 30 30 H 1.48505 * 109.47034 * 150.00043 * 27 25 23 31 31 H 1.09000 * 109.47508 * 270.02405 * 1 2 3 32 32 H 1.09000 * 109.46842 * 30.03231 * 1 2 3 33 33 H 1.09009 * 109.46733 * 150.02495 * 1 2 3 34 34 H 1.08000 * 119.18361 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.30757 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.75205 * 13.10507 * 14 13 11 37 37 H 1.09002 * 109.79572 * 252.39261 * 14 13 11 38 38 H 1.09003 * 110.36221 * 208.13718 * 17 15 14 39 39 H 1.08992 * 110.36669 * 330.45288 * 17 15 14 40 40 H 1.09002 * 110.31021 * 241.23898 * 18 17 15 41 41 H 1.09009 * 110.61066 * 118.91373 * 18 17 15 42 42 H 1.09001 * 109.74788 * 346.89504 * 21 13 11 43 43 H 1.09001 * 109.75236 * 107.57728 * 21 13 11 44 44 H 0.97001 * 120.00240 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2196 1.0436 0.0000 4 7 3.4676 0.7298 0.0005 5 6 3.5858 -0.6089 0.0069 6 6 2.2690 -1.1119 0.0005 7 7 2.0518 -2.4161 0.0004 8 6 3.0399 -3.2849 0.0005 9 6 4.3653 -2.8787 0.0002 10 6 4.6631 -1.5164 0.0002 11 6 6.0632 -1.0404 -0.0007 12 8 6.3573 -0.0185 -0.5896 13 7 7.0131 -1.7395 0.6515 14 6 8.3859 -1.2207 0.7612 15 6 8.8325 -1.3613 2.2271 16 1 9.8343 -0.9639 2.3904 17 6 7.7788 -0.6747 3.1252 18 6 6.7473 -1.7851 3.4418 19 6 7.2773 -3.0359 2.7050 20 1 7.0545 -3.9619 3.2353 21 6 6.6997 -3.0378 1.2694 22 7 8.7359 -2.7988 2.5802 23 6 9.7551 -3.6982 2.7460 24 1 9.5667 -4.6441 3.2321 25 6 11.0301 -3.3944 2.2891 26 7 11.2243 -2.3305 1.5389 27 14 12.4705 -4.4955 2.7390 28 1 13.0805 -4.0194 4.0064 29 1 11.9917 -5.8903 2.9135 30 1 13.4843 -4.4522 1.6547 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 2.8128 -4.3408 0.0000 35 1 5.1596 -3.6104 -0.0002 36 1 8.4074 -0.1709 0.4687 37 1 9.0506 -1.7962 0.1169 38 1 8.2417 -0.3104 4.0424 39 1 7.3000 0.1449 2.5896 40 1 5.7643 -1.5080 3.0608 41 1 6.6991 -1.9694 4.5151 42 1 5.6191 -3.1755 1.3091 43 1 7.1522 -3.8413 0.6882 44 1 12.1154 -2.1180 1.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029443895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:50 Heat of formation + Delta-G solvation = 146.204183 kcal Electronic energy + Delta-G solvation = -30864.503979 eV Core-core repulsion = 26820.798363 eV Total energy + Delta-G solvation = -4043.705615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.48918 -41.83211 -40.08299 -39.21094 -36.13071 -35.66696 -34.28248 -33.55417 -32.13162 -31.76499 -31.01335 -28.91157 -28.26486 -26.54931 -25.83573 -25.32657 -24.61972 -23.32543 -21.35096 -21.23254 -20.41535 -20.14929 -18.77088 -18.62470 -18.09020 -17.87592 -16.98440 -16.86834 -16.61997 -16.31149 -15.84989 -15.48065 -15.28247 -14.74730 -14.60251 -14.53324 -14.30115 -14.17430 -14.05302 -13.77331 -13.52461 -13.42114 -13.30496 -13.12565 -12.88094 -12.71061 -12.64348 -12.46095 -12.10660 -11.97787 -11.83070 -11.52406 -11.48590 -11.30870 -11.16971 -10.76847 -10.49860 -10.24719 -10.03054 -9.76270 -8.69138 -7.81282 -5.17363 -1.00949 -0.19231 0.91254 1.01041 1.52333 1.54138 1.61451 1.64773 1.90884 2.46518 2.53967 2.58194 3.13010 3.16499 3.34550 3.39365 3.50698 3.65963 3.96442 4.04097 4.10903 4.17834 4.22773 4.28112 4.29464 4.31814 4.39528 4.55965 4.58465 4.61976 4.69412 4.77794 4.85889 4.96400 5.04080 5.06804 5.09250 5.11732 5.25996 5.36561 5.39592 5.51463 5.60501 5.81267 6.24021 6.42207 6.46354 7.05297 7.05927 7.08192 7.76192 8.54600 9.30305 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.003173 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.729887 B = 8823.129276 C = 9157.141670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.297 5.297 3 N -0.022 5.022 4 N -0.278 5.278 5 C -0.027 4.027 6 C 0.203 3.797 7 N -0.455 5.455 8 C 0.181 3.819 9 C -0.134 4.134 10 C -0.030 4.030 11 C 0.543 3.457 12 O -0.575 6.575 13 N -0.577 5.577 14 C 0.131 3.869 15 C 0.167 3.833 16 H 0.080 0.920 17 C -0.131 4.131 18 C -0.111 4.111 19 C 0.130 3.870 20 H 0.108 0.892 21 C 0.067 3.933 22 N -0.602 5.602 23 C -0.226 4.226 24 H 0.089 0.911 25 C -0.058 4.058 26 N -0.940 5.940 27 Si 0.970 3.030 28 H -0.295 1.295 29 H -0.265 1.265 30 H -0.304 1.304 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.242 0.758 35 H 0.199 0.801 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.872 -5.670 -0.520 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.100 5.100 3 N -0.003 5.003 4 N -0.151 5.151 5 C -0.158 4.158 6 C -0.039 4.039 7 N -0.169 5.169 8 C 0.007 3.993 9 C -0.156 4.156 10 C -0.046 4.046 11 C 0.331 3.669 12 O -0.455 6.455 13 N -0.308 5.308 14 C 0.007 3.993 15 C 0.060 3.940 16 H 0.098 0.902 17 C -0.170 4.170 18 C -0.150 4.150 19 C 0.023 3.977 20 H 0.125 0.875 21 C -0.056 4.056 22 N -0.323 5.323 23 C -0.355 4.355 24 H 0.106 0.894 25 C -0.252 4.252 26 N -0.588 5.588 27 Si 0.800 3.200 28 H -0.222 1.222 29 H -0.190 1.190 30 H -0.231 1.231 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.258 0.742 35 H 0.215 0.785 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.096 0.904 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.413 -3.815 -0.850 24.724 hybrid contribution 2.317 -0.353 -0.132 2.347 sum -22.096 -4.168 -0.982 22.508 Atomic orbital electron populations 1.22799 0.68260 1.07897 1.07023 1.47473 1.10605 1.01115 1.50777 1.78112 0.96786 1.12105 1.13347 1.75413 1.08105 1.12672 1.18886 1.20383 0.94934 0.92041 1.08414 1.19913 0.87463 0.90443 1.06055 1.66482 1.38260 0.97786 1.14337 1.23853 0.85231 1.00862 0.89317 1.23294 1.01456 0.93378 0.97517 1.19540 0.90688 0.93848 1.00477 1.18455 0.85240 0.83558 0.79607 1.90772 1.82566 1.26589 1.45564 1.48098 1.09494 1.21386 1.51823 1.22003 0.80275 0.97060 0.99970 1.21668 0.97091 0.85488 0.89797 0.90205 1.22611 0.97573 0.97632 0.99217 1.22475 0.97032 0.95057 1.00465 1.22437 0.84007 0.97830 0.93415 0.87468 1.23730 1.02633 0.83337 0.95930 1.45360 1.00817 1.05227 1.80906 1.19353 0.87740 0.98339 1.30062 0.89362 1.25538 1.00412 0.99812 0.99400 1.70031 1.20911 1.29288 1.38553 0.85202 0.79473 0.79058 0.76259 1.22217 1.18974 1.23127 0.87059 0.86069 0.86095 0.74235 0.78468 0.93179 0.93062 0.92626 0.93784 0.91952 0.90936 0.85305 0.90372 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 11.41 127.77 1.46 2.18 16 2 N -0.30 -6.66 3.80 -366.59 -1.39 -8.05 16 3 N -0.02 -0.67 13.07 37.02 0.48 -0.18 16 4 N -0.28 -10.37 12.36 -51.93 -0.64 -11.01 16 5 C -0.03 -0.89 7.00 40.06 0.28 -0.61 16 6 C 0.20 5.05 8.08 134.17 1.08 6.13 16 7 N -0.45 -8.29 10.35 -193.09 -2.00 -10.29 16 8 C 0.18 2.21 11.14 84.82 0.94 3.16 16 9 C -0.13 -2.40 7.56 22.65 0.17 -2.22 16 10 C -0.03 -0.89 5.55 -19.79 -0.11 -1.00 16 11 C 0.54 21.17 7.48 86.79 0.65 21.82 16 12 O -0.57 -27.86 16.35 -3.88 -0.06 -27.92 16 13 N -0.58 -21.68 2.28 -816.65 -1.87 -23.54 16 14 C 0.13 6.02 5.80 86.56 0.50 6.52 16 15 C 0.17 7.75 3.09 45.46 0.14 7.89 16 16 H 0.08 4.34 6.35 -2.39 -0.02 4.33 16 17 C -0.13 -5.19 6.23 31.74 0.20 -4.99 16 18 C -0.11 -3.61 6.24 31.74 0.20 -3.41 16 19 C 0.13 4.33 4.32 45.76 0.20 4.53 16 20 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 21 C 0.07 1.93 4.43 86.85 0.38 2.32 16 22 N -0.60 -26.99 2.80 -635.05 -1.78 -28.77 16 23 C -0.23 -11.21 10.37 84.03 0.87 -10.33 16 24 H 0.09 4.10 7.85 -2.91 -0.02 4.08 16 25 C -0.06 -3.01 5.42 84.86 0.46 -2.55 16 26 N -0.94 -52.90 10.35 21.65 0.22 -52.67 16 27 Si 0.97 43.10 29.56 68.60 2.03 45.13 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 30 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.24 0.12 8.06 -2.91 -0.02 0.10 16 35 H 0.20 2.60 5.36 -2.91 -0.02 2.58 16 36 H 0.05 2.45 7.16 -2.39 -0.02 2.43 16 37 H 0.05 2.67 7.78 -2.39 -0.02 2.65 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 40 H 0.06 1.87 7.87 -2.39 -0.02 1.86 16 41 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.13 2.60 3.83 -2.39 -0.01 2.59 16 43 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 44 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -80.56 353.74 3.49 -77.07 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.05 Total: 10.80 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 7.43 Total: 29.43 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -6.96 Total: -134.52 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -80.56 3.49 -77.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029443895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.279 kcal (2) G-P(sol) polarization free energy of solvation -80.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds