Wall clock time and date at job start Wed Apr 1 2020 01:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00155 * 2 1 4 4 O 1.21600 * 119.99916 * 185.39631 * 3 2 1 5 5 C 1.47504 * 119.99947 * 5.38618 * 3 2 1 6 6 C 1.36623 * 125.76754 * 186.08968 * 5 3 2 7 7 N 1.35074 * 106.79941 * 179.84143 * 6 5 3 8 8 C 1.40239 * 126.61979 * 180.13020 * 7 6 5 9 9 C 1.39240 * 120.48372 * 180.31738 * 8 7 6 10 10 C 1.38516 * 118.36340 * 179.97438 * 9 8 7 11 11 C 1.38268 * 119.23013 * 359.97438 * 10 9 8 12 12 N 1.31865 * 120.90788 * 0.02562 * 11 10 9 13 13 C 1.31823 * 121.79143 * 359.71713 * 12 11 10 14 14 N 1.40220 * 106.76999 * 0.41695 * 7 6 5 15 15 N 1.28751 * 108.38452 * 359.73278 * 14 7 6 16 16 C 1.46504 * 119.99622 * 179.97438 * 2 1 3 17 17 H 1.09002 * 110.63545 * 176.85860 * 16 2 1 18 18 C 1.55150 * 110.72021 * 299.99654 * 16 2 1 19 19 C 1.54908 * 101.58198 * 153.86974 * 18 16 2 20 20 N 1.47423 * 104.92978 * 322.93475 * 19 18 16 21 21 C 1.36936 * 125.65164 * 204.15681 * 20 19 18 22 22 H 1.08005 * 119.99902 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00184 * 0.02562 * 21 20 19 24 24 N 1.31625 * 119.99775 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00307 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46917 * 60.00069 * 25 23 21 27 27 H 1.48497 * 109.47496 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47389 * 300.00062 * 25 23 21 29 29 C 1.47293 * 108.55653 * 24.15764 * 20 19 18 30 30 H 1.08994 * 109.47051 * 275.37678 * 1 2 3 31 31 H 1.09005 * 109.47089 * 35.37482 * 1 2 3 32 32 H 1.09003 * 109.47528 * 155.37430 * 1 2 3 33 33 H 1.08007 * 126.60143 * 0.02562 * 6 5 3 34 34 H 1.07996 * 120.82386 * 359.95550 * 9 8 7 35 35 H 1.08006 * 120.39057 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.55025 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.66432 * 180.28975 * 13 12 11 38 38 H 1.09004 * 111.00678 * 35.79438 * 18 16 2 39 39 H 1.09004 * 111.04240 * 271.95840 * 18 16 2 40 40 H 1.09001 * 110.36809 * 81.83340 * 19 18 16 41 41 H 1.09003 * 110.36589 * 204.04305 * 19 18 16 42 42 H 0.97001 * 119.99933 * 180.02562 * 24 23 21 43 43 H 1.09000 * 109.85739 * 239.50186 * 29 20 19 44 44 H 1.08992 * 110.00597 * 118.43230 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3508 1.1694 -0.0990 5 6 1.4063 2.4418 0.1199 6 6 1.9526 3.6897 0.0160 7 7 0.9441 4.5725 0.1832 8 6 1.0429 5.9711 0.1527 9 6 -0.0852 6.7634 0.3483 10 6 0.0628 8.1401 0.3098 11 6 1.3156 8.6784 0.0808 12 7 2.3644 7.8999 -0.1007 13 6 2.2680 6.5857 -0.0668 14 7 -0.2198 3.8210 0.3997 15 7 0.0894 2.5720 0.3557 16 6 2.1974 -1.2688 0.0006 17 1 3.2716 -1.0923 -0.0554 18 6 1.8435 -2.1064 1.2577 19 6 2.1171 -3.5471 0.7587 20 7 1.6771 -3.5517 -0.6483 21 6 1.2873 -4.6553 -1.3591 22 1 0.9814 -4.5534 -2.3899 23 6 1.2854 -5.9050 -0.7549 24 7 1.6588 -6.0292 0.5012 25 14 0.7531 -7.4104 -1.7243 26 1 1.6434 -7.5820 -2.9005 27 1 0.8408 -8.6134 -0.8581 28 1 -0.6472 -7.2327 -2.1851 29 6 1.7273 -2.1713 -1.1597 30 1 -0.3633 0.0963 1.0231 31 1 -0.3633 0.8380 -0.5950 32 1 -0.3634 -0.9342 -0.4282 33 1 2.9906 3.9250 -0.1677 34 1 -1.0519 6.3157 0.5254 35 1 -0.7904 8.7857 0.4577 36 1 1.4370 9.7511 0.0501 37 1 3.1504 5.9810 -0.2153 38 1 0.7956 -1.9794 1.5295 39 1 2.4953 -1.8521 2.0936 40 1 3.1808 -3.7758 0.8243 41 1 1.5388 -4.2659 1.3393 42 1 1.6578 -6.9025 0.9233 43 1 0.7357 -1.8628 -1.4908 44 1 2.4317 -2.1062 -1.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033126528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:38 Heat of formation + Delta-G solvation = 159.965756 kcal Electronic energy + Delta-G solvation = -28618.327332 eV Core-core repulsion = 24575.218464 eV Total energy + Delta-G solvation = -4043.108869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86085 -40.80780 -39.62716 -37.29331 -35.65337 -34.69235 -33.11899 -32.20189 -31.33462 -30.60856 -29.18257 -27.49923 -26.66477 -25.37326 -25.04233 -24.37306 -22.97960 -22.38506 -20.68544 -20.18405 -19.38894 -18.53014 -17.69270 -17.05798 -16.93936 -16.67746 -16.50385 -16.00682 -15.57034 -15.10173 -14.71683 -14.61329 -14.42389 -14.07709 -13.99665 -13.84652 -13.08048 -12.95865 -12.86620 -12.66574 -12.48930 -12.29802 -12.08306 -11.81926 -11.51578 -11.22542 -11.01929 -10.83607 -10.77455 -10.54116 -10.46720 -10.32917 -10.13085 -9.94384 -9.89997 -9.78943 -9.53238 -9.26487 -8.64334 -8.33053 -6.83387 -5.64018 -3.06437 -0.24783 0.40948 1.16019 1.40867 1.45377 3.01349 3.02124 3.19614 3.42041 3.46164 3.47537 3.61571 3.71683 3.82926 3.95028 4.19229 4.34002 4.50572 4.53749 4.58053 4.68042 4.87972 5.15844 5.30452 5.36604 5.44083 5.46118 5.49973 5.58735 5.63364 5.72586 5.85228 5.89158 6.08473 6.15807 6.29689 6.37782 6.55602 6.60531 6.73204 6.97430 7.11126 7.45531 7.51496 7.58544 7.62969 7.85829 8.18142 8.36386 9.22250 9.82626 10.47279 11.39512 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.037136 B = 0.001925 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.802062 B =14543.925039 C =14789.779007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.581 5.581 3 C 0.598 3.402 4 O -0.541 6.541 5 C -0.079 4.079 6 C 0.092 3.908 7 N -0.314 5.314 8 C 0.087 3.913 9 C -0.061 4.061 10 C -0.148 4.148 11 C 0.100 3.900 12 N -0.458 5.458 13 C 0.103 3.897 14 N -0.061 5.061 15 N -0.185 5.185 16 C 0.126 3.874 17 H 0.105 0.895 18 C -0.151 4.151 19 C 0.153 3.847 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.916 3.084 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.128 3.872 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.210 0.790 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.253 0.747 43 H 0.031 0.969 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 30.015 1.364 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.311 5.311 3 C 0.383 3.617 4 O -0.418 6.418 5 C -0.216 4.216 6 C -0.061 4.061 7 N -0.093 5.093 8 C -0.007 4.007 9 C -0.089 4.089 10 C -0.169 4.169 11 C -0.057 4.057 12 N -0.166 5.166 13 C -0.057 4.057 14 N -0.040 5.040 15 N -0.059 5.059 16 C 0.023 3.977 17 H 0.123 0.877 18 C -0.191 4.191 19 C 0.028 3.972 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.746 3.254 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.001 3.999 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.227 0.773 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.241 30.131 1.448 30.339 hybrid contribution -0.152 -1.056 -0.517 1.186 sum -3.394 29.074 0.931 29.287 Atomic orbital electron populations 1.22012 0.78464 1.03481 1.02507 1.47678 1.07781 1.05307 1.70375 1.16717 0.86017 0.81672 0.77325 1.90805 1.12750 1.86606 1.51608 1.21589 0.90468 0.95104 1.14469 1.23411 0.96207 0.88398 0.98045 1.47515 1.08387 1.05202 1.48214 1.18752 0.97216 0.78976 1.05783 1.21494 0.98455 0.93491 0.95426 1.22201 0.99832 0.94555 1.00279 1.23042 0.87959 1.00835 0.93850 1.67852 1.32835 1.03976 1.11923 1.22765 0.95066 0.91522 0.96393 1.82104 1.03945 0.96099 1.21831 1.74905 1.12511 1.09267 1.09205 1.22336 0.97004 0.80912 0.97443 0.87657 1.23390 1.00999 0.98862 0.95825 1.21947 0.98131 0.91312 0.85835 1.44477 1.77859 1.01049 1.09474 1.19016 1.36781 0.84622 0.94585 0.90502 1.24793 1.01781 0.97538 0.96542 1.69776 1.53825 1.22546 1.10916 0.86130 0.78372 0.82189 0.78659 1.21230 1.21573 1.21169 1.21581 0.98066 0.86255 0.93973 0.92168 0.90409 0.89965 0.77304 0.82779 0.83155 0.81479 0.81550 0.91596 0.92030 0.96695 0.87232 0.93640 0.95087 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 8.03 59.85 0.48 1.61 16 2 N -0.58 -9.53 2.89 -173.07 -0.50 -10.03 16 3 C 0.60 9.49 7.66 -12.49 -0.10 9.39 16 4 O -0.54 -9.71 16.25 5.28 0.09 -9.63 16 5 C -0.08 -1.03 6.62 -83.54 -0.55 -1.59 16 6 C 0.09 0.92 10.62 -16.71 -0.18 0.74 16 7 N -0.31 -3.04 3.82 -10.33 -0.04 -3.08 16 8 C 0.09 0.66 6.72 -83.43 -0.56 0.10 16 9 C -0.06 -0.36 9.80 -39.11 -0.38 -0.75 16 10 C -0.15 -0.57 10.11 -39.47 -0.40 -0.97 16 11 C 0.10 0.46 11.18 -17.53 -0.20 0.26 16 12 N -0.46 -3.19 10.35 -13.10 -0.14 -3.33 16 13 C 0.10 0.69 10.64 -17.35 -0.18 0.50 16 14 N -0.06 -0.72 13.20 60.35 0.80 0.07 16 15 N -0.18 -2.43 9.06 32.85 0.30 -2.13 16 16 C 0.13 2.38 3.36 -66.10 -0.22 2.16 16 17 H 0.11 2.09 7.00 -51.93 -0.36 1.72 16 18 C -0.15 -2.95 6.66 -24.59 -0.16 -3.12 16 19 C 0.15 3.73 5.88 -2.53 -0.01 3.71 16 20 N -0.60 -15.47 3.40 -169.86 -0.58 -16.05 16 21 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 22 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 25 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.13 2.74 6.79 -2.92 -0.02 2.72 16 30 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.08 1.05 5.92 -51.93 -0.31 0.74 16 32 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 33 H 0.21 1.38 7.15 -52.48 -0.38 1.01 16 34 H 0.15 0.85 7.82 -52.49 -0.41 0.44 16 35 H 0.15 0.14 8.06 -52.48 -0.42 -0.28 16 36 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 37 H 0.17 0.77 6.84 -52.49 -0.36 0.41 16 38 H 0.07 1.25 7.34 -51.93 -0.38 0.87 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.03 0.65 6.01 -51.93 -0.31 0.33 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -33.83 364.67 -6.99 -40.82 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.21 Total: -1.00 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.74 Total: 8.03 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.40 Total: -60.77 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.83 -6.99 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033126528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.788 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds