Wall clock time and date at job start Wed Apr 1 2020 01:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00155 * 2 1 4 4 O 1.21600 * 119.99916 * 185.39631 * 3 2 1 5 5 C 1.47504 * 119.99947 * 5.38618 * 3 2 1 6 6 C 1.36623 * 125.76754 * 186.08968 * 5 3 2 7 7 N 1.35074 * 106.79941 * 179.84143 * 6 5 3 8 8 C 1.40239 * 126.61979 * 180.13020 * 7 6 5 9 9 C 1.39240 * 120.48372 * 180.31738 * 8 7 6 10 10 C 1.38516 * 118.36340 * 179.97438 * 9 8 7 11 11 C 1.38268 * 119.23013 * 359.97438 * 10 9 8 12 12 N 1.31865 * 120.90788 * 0.02562 * 11 10 9 13 13 C 1.31823 * 121.79143 * 359.71713 * 12 11 10 14 14 N 1.40220 * 106.76999 * 0.41695 * 7 6 5 15 15 N 1.28751 * 108.38452 * 359.73278 * 14 7 6 16 16 C 1.46504 * 119.99622 * 179.97438 * 2 1 3 17 17 H 1.09002 * 110.63545 * 176.85860 * 16 2 1 18 18 C 1.55150 * 110.72021 * 299.99654 * 16 2 1 19 19 C 1.54908 * 101.58198 * 153.86974 * 18 16 2 20 20 N 1.47423 * 104.92978 * 322.93475 * 19 18 16 21 21 C 1.36936 * 125.65164 * 204.15681 * 20 19 18 22 22 H 1.08005 * 119.99902 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00184 * 0.02562 * 21 20 19 24 24 N 1.31625 * 119.99775 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00307 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46917 * 60.00069 * 25 23 21 27 27 H 1.48497 * 109.47496 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47389 * 300.00062 * 25 23 21 29 29 C 1.47293 * 108.55653 * 24.15764 * 20 19 18 30 30 H 1.08994 * 109.47051 * 275.37678 * 1 2 3 31 31 H 1.09005 * 109.47089 * 35.37482 * 1 2 3 32 32 H 1.09003 * 109.47528 * 155.37430 * 1 2 3 33 33 H 1.08007 * 126.60143 * 0.02562 * 6 5 3 34 34 H 1.07996 * 120.82386 * 359.95550 * 9 8 7 35 35 H 1.08006 * 120.39057 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.55025 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.66432 * 180.28975 * 13 12 11 38 38 H 1.09004 * 111.00678 * 35.79438 * 18 16 2 39 39 H 1.09004 * 111.04240 * 271.95840 * 18 16 2 40 40 H 1.09001 * 110.36809 * 81.83340 * 19 18 16 41 41 H 1.09003 * 110.36589 * 204.04305 * 19 18 16 42 42 H 0.97001 * 119.99933 * 180.02562 * 24 23 21 43 43 H 1.09000 * 109.85739 * 239.50186 * 29 20 19 44 44 H 1.08992 * 110.00597 * 118.43230 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3508 1.1694 -0.0990 5 6 1.4063 2.4418 0.1199 6 6 1.9526 3.6897 0.0160 7 7 0.9441 4.5725 0.1832 8 6 1.0429 5.9711 0.1527 9 6 -0.0852 6.7634 0.3483 10 6 0.0628 8.1401 0.3098 11 6 1.3156 8.6784 0.0808 12 7 2.3644 7.8999 -0.1007 13 6 2.2680 6.5857 -0.0668 14 7 -0.2198 3.8210 0.3997 15 7 0.0894 2.5720 0.3557 16 6 2.1974 -1.2688 0.0006 17 1 3.2716 -1.0923 -0.0554 18 6 1.8435 -2.1064 1.2577 19 6 2.1171 -3.5471 0.7587 20 7 1.6771 -3.5517 -0.6483 21 6 1.2873 -4.6553 -1.3591 22 1 0.9814 -4.5534 -2.3899 23 6 1.2854 -5.9050 -0.7549 24 7 1.6588 -6.0292 0.5012 25 14 0.7531 -7.4104 -1.7243 26 1 1.6434 -7.5820 -2.9005 27 1 0.8408 -8.6134 -0.8581 28 1 -0.6472 -7.2327 -2.1851 29 6 1.7273 -2.1713 -1.1597 30 1 -0.3633 0.0963 1.0231 31 1 -0.3633 0.8380 -0.5950 32 1 -0.3634 -0.9342 -0.4282 33 1 2.9906 3.9250 -0.1677 34 1 -1.0519 6.3157 0.5254 35 1 -0.7904 8.7857 0.4577 36 1 1.4370 9.7511 0.0501 37 1 3.1504 5.9810 -0.2153 38 1 0.7956 -1.9794 1.5295 39 1 2.4953 -1.8521 2.0936 40 1 3.1808 -3.7758 0.8243 41 1 1.5388 -4.2659 1.3393 42 1 1.6578 -6.9025 0.9233 43 1 0.7357 -1.8628 -1.4908 44 1 2.4317 -2.1062 -1.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033126528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:37 Heat of formation + Delta-G solvation = 137.788548 kcal Electronic energy + Delta-G solvation = -28619.289008 eV Core-core repulsion = 24575.218464 eV Total energy + Delta-G solvation = -4044.070545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68810 -41.35091 -40.88217 -38.92220 -36.54795 -36.03316 -34.06593 -33.56838 -32.22689 -31.40203 -30.91820 -29.14072 -27.94602 -26.65762 -25.85932 -25.49429 -23.96792 -23.03775 -22.11763 -21.82795 -20.55643 -19.53808 -18.95568 -18.30064 -17.78997 -17.57752 -17.50009 -16.90789 -16.73106 -16.32918 -16.20810 -15.81181 -15.49126 -15.06654 -15.04474 -14.69486 -14.38119 -14.29343 -13.98630 -13.83118 -13.54769 -13.36349 -13.34528 -13.25380 -12.96941 -12.83982 -12.65838 -12.40761 -12.25793 -12.19091 -12.05385 -11.79173 -11.37897 -11.23095 -11.00016 -10.75348 -10.73586 -10.71192 -9.88520 -9.69126 -8.90185 -7.76101 -5.21765 -0.82723 0.01812 0.39329 0.56939 0.70384 1.48492 1.51870 1.58103 1.77659 2.04376 2.51404 2.61763 2.90044 3.03694 3.30184 3.33793 3.44841 3.56431 3.72021 3.75912 3.85956 3.87765 3.92062 4.10502 4.15583 4.23282 4.27543 4.41627 4.52950 4.62289 4.66252 4.70212 4.83833 4.88450 4.95926 4.97778 5.06850 5.10896 5.18602 5.46409 5.49924 5.56296 5.59473 5.78628 6.25129 6.29837 6.61230 6.71688 6.94783 7.10211 7.75907 8.40189 9.25366 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.037136 B = 0.001925 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.802062 B =14543.925039 C =14789.779007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.585 5.585 3 C 0.601 3.399 4 O -0.565 6.565 5 C -0.104 4.104 6 C 0.111 3.889 7 N -0.301 5.301 8 C 0.058 3.942 9 C -0.067 4.067 10 C -0.138 4.138 11 C 0.104 3.896 12 N -0.483 5.483 13 C 0.103 3.897 14 N -0.073 5.073 15 N -0.200 5.200 16 C 0.143 3.857 17 H 0.097 0.903 18 C -0.133 4.133 19 C 0.157 3.843 20 N -0.621 5.621 21 C -0.239 4.239 22 H 0.081 0.919 23 C -0.066 4.066 24 N -0.948 5.948 25 Si 0.983 3.017 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.275 1.275 29 C 0.128 3.872 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.241 0.759 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.181 0.819 38 H 0.074 0.926 39 H 0.079 0.921 40 H -0.010 1.010 41 H 0.081 0.919 42 H 0.248 0.752 43 H 0.042 0.958 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 33.035 0.976 33.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.315 5.315 3 C 0.388 3.612 4 O -0.444 6.444 5 C -0.242 4.242 6 C -0.043 4.043 7 N -0.080 5.080 8 C -0.035 4.035 9 C -0.094 4.094 10 C -0.158 4.158 11 C -0.053 4.053 12 N -0.192 5.192 13 C -0.057 4.057 14 N -0.052 5.052 15 N -0.074 5.074 16 C 0.039 3.961 17 H 0.115 0.885 18 C -0.172 4.172 19 C 0.031 3.969 20 N -0.348 5.348 21 C -0.368 4.368 22 H 0.099 0.901 23 C -0.258 4.258 24 N -0.597 5.597 25 Si 0.811 3.189 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.201 1.201 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.173 0.827 35 H 0.201 0.799 36 H 0.215 0.785 37 H 0.198 0.802 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.008 0.992 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.007 33.215 1.052 33.472 hybrid contribution 0.081 -1.735 -0.411 1.785 sum -3.926 31.479 0.640 31.730 Atomic orbital electron populations 1.22018 0.77223 1.03275 1.03128 1.47629 1.08382 1.04617 1.70891 1.16972 0.85802 0.82194 0.76201 1.90784 1.13862 1.87091 1.52668 1.21232 0.90821 0.94721 1.17378 1.23817 0.97312 0.87355 0.95824 1.47583 1.07624 1.06056 1.46708 1.19007 0.98390 0.77822 1.08313 1.21725 0.98124 0.94490 0.95110 1.22552 1.00747 0.93859 0.98600 1.23651 0.87642 1.02146 0.91853 1.67922 1.34069 1.04129 1.13040 1.22995 0.95210 0.91779 0.95734 1.82031 1.04887 0.95796 1.22483 1.74840 1.12639 1.10063 1.09870 1.21912 0.96742 0.81728 0.95767 0.88493 1.23179 1.01887 0.95622 0.96541 1.21716 0.95957 0.93726 0.85473 1.44734 1.77746 1.02254 1.10087 1.19391 1.36614 0.85699 0.95089 0.90085 1.25647 1.02262 1.00332 0.97602 1.70022 1.54788 1.22673 1.12249 0.85089 0.78286 0.78318 0.77225 1.20649 1.21896 1.20116 1.21667 0.98509 0.84876 0.94741 0.91416 0.89283 0.91068 0.74315 0.82678 0.79863 0.78503 0.80198 0.90784 0.90225 0.99198 0.90115 0.94210 0.93993 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.42 8.03 127.77 1.03 3.45 16 2 N -0.59 -18.86 2.89 -819.74 -2.37 -21.23 16 3 C 0.60 18.67 7.66 86.69 0.66 19.34 16 4 O -0.57 -19.99 16.25 -4.03 -0.07 -20.06 16 5 C -0.10 -2.60 6.62 40.81 0.27 -2.33 16 6 C 0.11 2.02 10.62 83.82 0.89 2.91 16 7 N -0.30 -5.36 3.82 -186.58 -0.71 -6.07 16 8 C 0.06 0.77 6.72 38.17 0.26 1.03 16 9 C -0.07 -0.66 9.80 22.58 0.22 -0.43 16 10 C -0.14 -0.60 10.11 22.34 0.23 -0.38 16 11 C 0.10 0.61 11.18 84.70 0.95 1.56 16 12 N -0.48 -5.58 10.35 -195.35 -2.02 -7.60 16 13 C 0.10 1.16 10.64 84.83 0.90 2.06 16 14 N -0.07 -1.65 13.20 37.02 0.49 -1.16 16 15 N -0.20 -5.08 9.06 -49.98 -0.45 -5.53 16 16 C 0.14 5.38 3.36 46.18 0.16 5.54 16 17 H 0.10 3.87 7.00 -2.39 -0.02 3.85 16 18 C -0.13 -5.20 6.66 31.98 0.21 -4.98 16 19 C 0.16 7.89 5.88 86.85 0.51 8.40 16 20 N -0.62 -32.64 3.40 -691.31 -2.35 -34.99 16 21 C -0.24 -13.54 10.28 84.03 0.86 -12.67 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 24 N -0.95 -56.62 10.09 21.65 0.22 -56.40 16 25 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 C 0.13 5.53 6.79 86.68 0.59 6.12 16 30 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 31 H 0.09 2.33 5.92 -2.38 -0.01 2.32 16 32 H 0.07 2.16 6.17 -2.39 -0.01 2.14 16 33 H 0.24 2.61 7.15 -2.91 -0.02 2.59 16 34 H 0.16 1.45 7.82 -2.91 -0.02 1.42 16 35 H 0.18 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.20 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.18 1.29 6.84 -2.91 -0.02 1.27 16 38 H 0.07 2.78 7.34 -2.39 -0.02 2.76 16 39 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.08 4.56 5.87 -2.39 -0.01 4.55 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.04 1.73 6.01 -2.39 -0.01 1.72 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.58 364.67 4.01 -70.57 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.05 Total: 8.29 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 8.20 Total: 26.31 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -7.20 Total: -133.00 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.07 Total: -20.06 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.58 4.01 -70.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033126528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.356 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds