Wall clock time and date at job start Wed Apr 1 2020 01:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48504 * 109.46919 * 274.98738 * 3 2 1 5 5 H 1.48494 * 109.47075 * 34.98610 * 3 2 1 6 6 H 1.48493 * 109.47106 * 154.98680 * 3 2 1 7 7 C 1.38815 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00287 * 173.60110 * 7 2 1 9 9 N 1.36941 * 119.99841 * 353.60389 * 7 2 1 10 10 C 1.47119 * 125.76508 * 6.63085 * 9 7 2 11 11 C 1.55477 * 107.59696 * 176.70214 * 10 9 7 12 12 C 1.54413 * 102.03368 * 339.52564 * 11 10 9 13 13 H 1.09003 * 109.99869 * 278.29474 * 12 11 10 14 14 C 1.48206 * 125.76659 * 186.67925 * 9 7 2 15 15 H 1.08999 * 111.52967 * 326.10586 * 14 9 7 16 16 C 1.53017 * 107.11485 * 89.10710 * 14 9 7 17 17 C 1.52228 * 111.64857 * 166.78732 * 16 14 9 18 18 C 1.53470 * 109.21986 * 298.07274 * 17 16 14 19 19 N 1.45123 * 111.60647 * 155.95058 * 12 11 10 20 20 C 1.34775 * 119.58202 * 111.34568 * 19 12 11 21 21 O 1.21590 * 120.00338 * 177.94355 * 20 19 12 22 22 C 1.47532 * 119.99566 * 357.94536 * 20 19 12 23 23 C 1.39535 * 120.05636 * 325.92127 * 22 20 19 24 24 C 1.37778 * 120.19154 * 179.73733 * 23 22 20 25 25 C 1.38651 * 119.96890 * 0.69859 * 24 23 22 26 26 C 1.37656 * 120.32315 * 359.76888 * 25 24 23 27 27 C 1.38876 * 120.87179 * 359.60253 * 26 25 24 28 28 O 1.35859 * 111.29865 * 181.02131 * 27 26 25 29 29 C 1.43784 * 109.23642 * 340.66161 * 28 27 26 30 30 C 1.51674 * 132.12994 * 179.08111 * 26 25 24 31 31 H 0.97004 * 120.00239 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.89093 * 296.84444 * 10 9 7 33 33 H 1.09000 * 109.88727 * 57.87709 * 10 9 7 34 34 H 1.08996 * 111.55171 * 221.17311 * 11 10 9 35 35 H 1.09000 * 110.46037 * 97.38471 * 11 10 9 36 36 H 1.08996 * 109.21098 * 288.41581 * 16 14 9 37 37 H 1.09003 * 109.20804 * 47.73172 * 16 14 9 38 38 H 1.08995 * 110.37024 * 177.46615 * 17 16 14 39 39 H 1.08994 * 108.13518 * 57.32891 * 17 16 14 40 40 H 1.09004 * 109.83213 * 297.19127 * 18 17 16 41 41 H 1.08991 * 109.83754 * 176.30130 * 18 17 16 42 42 H 1.08004 * 119.90268 * 359.97438 * 23 22 20 43 43 H 1.07994 * 120.01898 * 180.46112 * 24 23 22 44 44 H 1.08008 * 119.83735 * 179.74393 * 25 24 23 45 45 H 1.08997 * 110.75286 * 269.56014 * 29 28 27 46 46 H 1.09002 * 110.75033 * 146.19224 * 29 28 27 47 47 H 1.08999 * 110.93974 * 313.75214 * 30 26 25 48 48 H 1.08990 * 110.94643 * 77.41701 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0852 -1.2051 -0.1048 9 7 1.3319 -2.3845 0.1311 10 6 -0.1310 -2.5397 0.1430 11 6 -0.4416 -4.0608 0.2287 12 6 0.8792 -4.6875 -0.2683 13 1 0.9057 -4.6860 -1.3581 14 6 1.9475 -3.7237 0.2865 15 1 2.8818 -3.8014 -0.2694 16 6 2.1485 -3.9556 1.7856 17 6 2.4710 -5.4118 2.0903 18 6 1.2915 -6.2921 1.6555 19 7 1.0496 -6.0399 0.2296 20 6 0.9847 -7.0778 -0.6277 21 8 1.1635 -8.2111 -0.2252 22 6 0.6967 -6.8387 -2.0548 23 6 -0.1594 -5.8030 -2.4310 24 6 -0.4261 -5.5738 -3.7631 25 6 0.1457 -6.3828 -4.7331 26 6 0.9841 -7.4134 -4.3727 27 6 1.2798 -7.6579 -3.0380 28 8 2.1396 -8.7016 -2.9062 29 6 2.1147 -9.4905 -4.1080 30 6 1.7264 -8.4541 -5.1891 31 1 -0.4851 0.8401 0.0004 32 1 -0.5523 -2.0184 1.0026 33 1 -0.5540 -2.1383 -0.7779 34 1 -1.2707 -4.3374 -0.4225 35 1 -0.6440 -4.3508 1.2597 36 1 2.9558 -3.3160 2.1423 37 1 1.2299 -3.7010 2.3142 38 1 2.6539 -5.5448 3.1565 39 1 3.3615 -5.6874 1.5255 40 1 0.4039 -6.0327 2.2326 41 1 1.5379 -7.3427 1.8086 42 1 -0.6113 -5.1768 -1.6758 43 1 -1.0832 -4.7668 -4.0515 44 1 -0.0681 -6.2038 -5.7766 45 1 1.3628 -10.2765 -4.0386 46 1 3.0985 -9.9126 -4.3133 47 1 1.0728 -8.8997 -5.9390 48 1 2.6135 -8.0244 -5.6541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049733117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:02 Heat of formation + Delta-G solvation = 15.865986 kcal Electronic energy + Delta-G solvation = -31387.655416 eV Core-core repulsion = 27409.545504 eV Total energy + Delta-G solvation = -3978.109911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42683 -40.23506 -37.96057 -37.35365 -34.91970 -33.46651 -32.28681 -32.07629 -30.32177 -29.39067 -29.03594 -28.12535 -25.20189 -24.45592 -23.66001 -22.85629 -22.06131 -21.70191 -20.45172 -19.95436 -18.35791 -17.61624 -17.12677 -16.83436 -16.55264 -16.07382 -15.54980 -15.40977 -14.78032 -14.74210 -14.29796 -14.02413 -13.65749 -13.64415 -13.45668 -13.27718 -13.15181 -12.73002 -12.60798 -12.47073 -12.03382 -11.96713 -11.88562 -11.84586 -11.57587 -11.11837 -11.07305 -10.95748 -10.89433 -10.72660 -10.60788 -10.43144 -10.11731 -10.04725 -9.84454 -9.64226 -9.50103 -8.81743 -8.64897 -8.29770 -8.15550 -6.89999 -5.77231 -3.10006 0.90080 1.25055 2.89759 3.17214 3.20636 3.37308 3.43959 3.45279 3.72857 4.21580 4.36244 4.44179 4.59376 4.77317 4.87075 5.06114 5.09774 5.19889 5.21896 5.25894 5.28478 5.33987 5.41825 5.48166 5.50218 5.51992 5.53401 5.62934 5.73707 5.81684 5.86820 6.06228 6.11616 6.15239 6.19824 6.22929 6.26306 6.33447 6.38464 6.43567 6.51915 6.53642 6.78392 6.91139 7.03995 7.05735 7.47023 7.55082 7.66997 7.76804 8.18263 8.40645 9.15873 9.75427 10.41498 11.34573 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003757 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.356258 B = 7450.431168 C = 8566.469964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.181 3.819 11 C -0.161 4.161 12 C 0.105 3.895 13 H 0.109 0.891 14 C 0.158 3.842 15 H 0.060 0.940 16 C -0.128 4.128 17 C -0.133 4.133 18 C 0.114 3.886 19 N -0.587 5.587 20 C 0.561 3.439 21 O -0.540 6.540 22 C -0.152 4.152 23 C -0.063 4.063 24 C -0.153 4.153 25 C -0.047 4.047 26 C -0.191 4.191 27 C 0.160 3.840 28 O -0.286 6.286 29 C 0.048 3.952 30 C -0.107 4.107 31 H 0.252 0.748 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -15.502 -7.630 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.200 4.200 12 C 0.000 4.000 13 H 0.126 0.874 14 C 0.049 3.951 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.008 4.008 19 N -0.318 5.318 20 C 0.349 3.651 21 O -0.418 6.418 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.171 4.171 25 C -0.065 4.065 26 C -0.192 4.192 27 C 0.113 3.887 28 O -0.199 6.199 29 C -0.027 4.027 30 C -0.144 4.144 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.096 0.904 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.048 -15.908 -7.222 17.471 hybrid contribution 0.396 1.095 -0.160 1.175 sum 0.347 -14.813 -7.382 16.554 Atomic orbital electron populations 1.69946 1.04874 1.25107 1.56728 1.24784 0.95665 0.97535 1.02055 0.86154 0.78771 0.83703 0.77473 1.21697 1.21667 1.20651 1.19024 0.91028 0.82246 1.43216 0.90437 1.44675 1.01277 1.00514 1.85704 1.21324 0.84507 0.87155 1.01387 1.23428 0.95721 1.00089 1.00770 1.22490 0.97178 0.80251 1.00068 0.87353 1.21326 0.94428 0.85963 0.93356 0.92159 1.21980 1.02087 0.93809 0.98987 1.21824 0.97874 0.96748 1.00697 1.21659 0.98114 1.00886 0.80109 1.47499 1.70123 1.06229 1.07964 1.18150 0.76876 0.84674 0.85358 1.90748 1.50501 1.22034 1.78503 1.19159 1.03957 1.00311 0.92193 1.21844 0.94581 0.93750 0.97924 1.21045 1.02777 1.01056 0.92238 1.20467 0.93760 0.92365 0.99948 1.20722 1.03852 1.01195 0.93422 1.19376 0.88652 0.87996 0.92677 1.86923 1.56725 1.36812 1.39402 1.23893 1.03416 0.93683 0.81685 1.21786 1.00400 0.94145 0.98091 0.93725 0.93389 0.93492 0.91607 0.91515 0.91971 0.92106 0.91214 0.92152 0.91516 0.89164 0.82628 0.84512 0.85440 0.90390 0.87531 0.89012 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.74 10.38 55.49 0.58 -25.17 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 3 Si 0.91 21.46 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.01 10.28 -15.06 -0.15 -6.17 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.60 -14.16 2.91 -161.62 -0.47 -14.63 16 10 C 0.18 4.06 5.20 -2.39 -0.01 4.05 16 11 C -0.16 -2.80 5.74 -24.67 -0.14 -2.95 16 12 C 0.10 1.82 2.12 -67.30 -0.14 1.68 16 13 H 0.11 1.91 4.21 -51.93 -0.22 1.69 16 14 C 0.16 3.12 3.63 -66.35 -0.24 2.88 16 15 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -2.30 5.08 -27.12 -0.14 -2.44 16 17 C -0.13 -1.97 6.08 -26.88 -0.16 -2.14 16 18 C 0.11 1.74 6.19 -3.63 -0.02 1.71 16 19 N -0.59 -9.81 2.73 -166.24 -0.45 -10.26 16 20 C 0.56 10.06 7.37 -12.47 -0.09 9.97 16 21 O -0.54 -10.97 15.82 2.55 0.04 -10.93 16 22 C -0.15 -2.48 5.37 -104.72 -0.56 -3.04 16 23 C -0.06 -0.91 7.30 -39.27 -0.29 -1.19 16 24 C -0.15 -1.87 10.05 -39.60 -0.40 -2.27 16 25 C -0.05 -0.53 10.02 -39.64 -0.40 -0.92 16 26 C -0.19 -2.33 6.27 -104.12 -0.65 -2.98 16 27 C 0.16 2.46 6.69 -38.44 -0.26 2.20 16 28 O -0.29 -4.36 10.65 -22.03 -0.23 -4.59 16 29 C 0.05 0.46 8.01 38.06 0.30 0.77 16 30 C -0.11 -0.93 7.12 -26.50 -0.19 -1.12 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 1.21 7.43 -51.93 -0.39 0.82 16 33 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 34 H 0.07 1.01 6.36 -51.93 -0.33 0.68 16 35 H 0.07 1.13 6.89 -51.93 -0.36 0.77 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.15 7.21 -51.93 -0.37 0.77 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 41 H 0.09 1.39 6.93 -51.93 -0.36 1.03 16 42 H 0.16 2.25 3.47 -52.48 -0.18 2.07 16 43 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -31.99 366.30 -10.45 -42.44 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.76 Total: 3.35 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.64 Total: -2.15 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.35 Total: -50.06 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.19 Total: -15.52 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.99 -10.45 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049733117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.307 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds