Wall clock time and date at job start Wed Apr 1 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48504 * 109.46919 * 274.98738 * 3 2 1 5 5 H 1.48494 * 109.47075 * 34.98610 * 3 2 1 6 6 H 1.48493 * 109.47106 * 154.98680 * 3 2 1 7 7 C 1.38815 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00287 * 173.60110 * 7 2 1 9 9 N 1.36941 * 119.99841 * 353.60389 * 7 2 1 10 10 C 1.47119 * 125.76508 * 6.63085 * 9 7 2 11 11 C 1.55477 * 107.59696 * 176.70214 * 10 9 7 12 12 C 1.54413 * 102.03368 * 339.52564 * 11 10 9 13 13 H 1.09003 * 109.99869 * 278.29474 * 12 11 10 14 14 C 1.48206 * 125.76659 * 186.67925 * 9 7 2 15 15 H 1.08999 * 111.52967 * 326.10586 * 14 9 7 16 16 C 1.53017 * 107.11485 * 89.10710 * 14 9 7 17 17 C 1.52228 * 111.64857 * 166.78732 * 16 14 9 18 18 C 1.53470 * 109.21986 * 298.07274 * 17 16 14 19 19 N 1.45123 * 111.60647 * 155.95058 * 12 11 10 20 20 C 1.34775 * 119.58202 * 111.34568 * 19 12 11 21 21 O 1.21590 * 120.00338 * 177.94355 * 20 19 12 22 22 C 1.47532 * 119.99566 * 357.94536 * 20 19 12 23 23 C 1.39535 * 120.05636 * 325.92127 * 22 20 19 24 24 C 1.37778 * 120.19154 * 179.73733 * 23 22 20 25 25 C 1.38651 * 119.96890 * 0.69859 * 24 23 22 26 26 C 1.37656 * 120.32315 * 359.76888 * 25 24 23 27 27 C 1.38876 * 120.87179 * 359.60253 * 26 25 24 28 28 O 1.35859 * 111.29865 * 181.02131 * 27 26 25 29 29 C 1.43784 * 109.23642 * 340.66161 * 28 27 26 30 30 C 1.51674 * 132.12994 * 179.08111 * 26 25 24 31 31 H 0.97004 * 120.00239 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.89093 * 296.84444 * 10 9 7 33 33 H 1.09000 * 109.88727 * 57.87709 * 10 9 7 34 34 H 1.08996 * 111.55171 * 221.17311 * 11 10 9 35 35 H 1.09000 * 110.46037 * 97.38471 * 11 10 9 36 36 H 1.08996 * 109.21098 * 288.41581 * 16 14 9 37 37 H 1.09003 * 109.20804 * 47.73172 * 16 14 9 38 38 H 1.08995 * 110.37024 * 177.46615 * 17 16 14 39 39 H 1.08994 * 108.13518 * 57.32891 * 17 16 14 40 40 H 1.09004 * 109.83213 * 297.19127 * 18 17 16 41 41 H 1.08991 * 109.83754 * 176.30130 * 18 17 16 42 42 H 1.08004 * 119.90268 * 359.97438 * 23 22 20 43 43 H 1.07994 * 120.01898 * 180.46112 * 24 23 22 44 44 H 1.08008 * 119.83735 * 179.74393 * 25 24 23 45 45 H 1.08997 * 110.75286 * 269.56014 * 29 28 27 46 46 H 1.09002 * 110.75033 * 146.19224 * 29 28 27 47 47 H 1.08999 * 110.93974 * 313.75214 * 30 26 25 48 48 H 1.08990 * 110.94643 * 77.41701 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0852 -1.2051 -0.1048 9 7 1.3319 -2.3845 0.1311 10 6 -0.1310 -2.5397 0.1430 11 6 -0.4416 -4.0608 0.2287 12 6 0.8792 -4.6875 -0.2683 13 1 0.9057 -4.6860 -1.3581 14 6 1.9475 -3.7237 0.2865 15 1 2.8818 -3.8014 -0.2694 16 6 2.1485 -3.9556 1.7856 17 6 2.4710 -5.4118 2.0903 18 6 1.2915 -6.2921 1.6555 19 7 1.0496 -6.0399 0.2296 20 6 0.9847 -7.0778 -0.6277 21 8 1.1635 -8.2111 -0.2252 22 6 0.6967 -6.8387 -2.0548 23 6 -0.1594 -5.8030 -2.4310 24 6 -0.4261 -5.5738 -3.7631 25 6 0.1457 -6.3828 -4.7331 26 6 0.9841 -7.4134 -4.3727 27 6 1.2798 -7.6579 -3.0380 28 8 2.1396 -8.7016 -2.9062 29 6 2.1147 -9.4905 -4.1080 30 6 1.7264 -8.4541 -5.1891 31 1 -0.4851 0.8401 0.0004 32 1 -0.5523 -2.0184 1.0026 33 1 -0.5540 -2.1383 -0.7779 34 1 -1.2707 -4.3374 -0.4225 35 1 -0.6440 -4.3508 1.2597 36 1 2.9558 -3.3160 2.1423 37 1 1.2299 -3.7010 2.3142 38 1 2.6539 -5.5448 3.1565 39 1 3.3615 -5.6874 1.5255 40 1 0.4039 -6.0327 2.2326 41 1 1.5379 -7.3427 1.8086 42 1 -0.6113 -5.1768 -1.6758 43 1 -1.0832 -4.7668 -4.0515 44 1 -0.0681 -6.2038 -5.7766 45 1 1.3628 -10.2765 -4.0386 46 1 3.0985 -9.9126 -4.3133 47 1 1.0728 -8.8997 -5.9390 48 1 2.6135 -8.0244 -5.6541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049733117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:01 Heat of formation + Delta-G solvation = -2.172809 kcal Electronic energy + Delta-G solvation = -31388.437636 eV Core-core repulsion = 27409.545504 eV Total energy + Delta-G solvation = -3978.892132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49828 -41.50166 -39.46127 -38.38013 -36.53940 -34.68178 -33.94912 -33.34302 -31.39587 -30.77974 -30.31148 -29.62664 -26.68320 -26.18583 -24.64360 -23.98994 -23.16586 -22.91211 -22.00587 -21.48953 -19.67408 -18.90455 -18.63627 -18.01534 -17.70443 -17.06253 -16.82083 -16.73361 -16.52554 -16.14499 -15.72228 -15.30374 -15.13803 -14.94350 -14.62887 -14.51498 -14.15776 -14.07153 -13.90052 -13.74700 -13.55469 -13.29370 -13.11267 -12.84934 -12.81269 -12.69100 -12.53871 -12.41556 -12.26332 -12.14733 -12.06729 -11.86341 -11.79826 -11.59607 -11.50433 -11.28331 -10.84912 -10.65671 -9.91011 -9.64949 -9.18218 -8.85001 -7.82541 -5.16199 -0.14629 0.25969 1.48409 1.49551 1.58132 1.65260 1.91192 2.26754 2.51502 2.67180 3.29329 3.35335 3.43570 3.59671 3.71035 3.76040 3.85040 3.94906 4.00415 4.05479 4.09966 4.16272 4.20685 4.27605 4.35089 4.41005 4.53538 4.55522 4.59300 4.64737 4.77287 4.81536 4.82331 4.88468 4.95498 5.00612 5.02219 5.10157 5.15144 5.27831 5.30764 5.39573 5.44121 5.54112 5.57105 5.59766 5.67237 5.78823 6.10594 6.20153 6.32170 7.04818 7.13403 7.77912 8.43660 9.27649 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003757 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.356258 B = 7450.431168 C = 8566.469964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.613 5.613 10 C 0.193 3.807 11 C -0.143 4.143 12 C 0.122 3.878 13 H 0.110 0.890 14 C 0.151 3.849 15 H 0.050 0.950 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.111 3.889 19 N -0.585 5.585 20 C 0.558 3.442 21 O -0.571 6.571 22 C -0.183 4.183 23 C -0.075 4.075 24 C -0.154 4.154 25 C -0.039 4.039 26 C -0.190 4.190 27 C 0.135 3.865 28 O -0.321 6.321 29 C 0.038 3.962 30 C -0.098 4.098 31 H 0.247 0.753 32 H 0.014 0.986 33 H 0.019 0.981 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.086 0.914 46 H 0.130 0.870 47 H 0.122 0.878 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 -16.631 -9.326 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.338 5.338 10 C 0.067 3.933 11 C -0.182 4.182 12 C 0.017 3.983 13 H 0.127 0.873 14 C 0.044 3.956 15 H 0.068 0.932 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.010 4.010 19 N -0.315 5.315 20 C 0.349 3.651 21 O -0.451 6.451 22 C -0.187 4.187 23 C -0.093 4.093 24 C -0.172 4.172 25 C -0.057 4.057 26 C -0.191 4.191 27 C 0.088 3.912 28 O -0.235 6.235 29 C -0.036 4.036 30 C -0.135 4.135 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.183 0.817 45 H 0.105 0.895 46 H 0.148 0.852 47 H 0.140 0.860 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.239 -17.064 -8.915 19.254 hybrid contribution 0.351 1.379 0.301 1.455 sum 0.590 -15.685 -8.614 17.904 Atomic orbital electron populations 1.70133 1.06002 1.25216 1.57946 1.25490 0.96465 1.00363 1.02586 0.85204 0.77828 0.79936 0.77219 1.21485 1.22178 1.19787 1.19316 0.91315 0.83555 1.42319 0.90502 1.44861 1.02027 1.01277 1.85632 1.21032 0.83724 0.90051 0.98453 1.23271 0.96633 0.96216 1.02033 1.22206 0.95933 0.80124 1.00027 0.87300 1.21495 0.94550 0.84889 0.94702 0.93181 1.21795 1.01183 0.95779 0.97107 1.21744 0.97479 0.94159 1.02456 1.21800 0.98805 1.00979 0.79460 1.47501 1.69843 1.05587 1.08562 1.18510 0.76097 0.84246 0.86268 1.90712 1.52148 1.23072 1.79214 1.19221 1.05976 1.02096 0.91413 1.21794 0.94927 0.93631 0.98955 1.21376 1.02712 1.01559 0.91565 1.20897 0.92220 0.91061 1.01543 1.21208 1.03392 1.01703 0.92750 1.19701 0.89223 0.88383 0.93911 1.86870 1.56915 1.37419 1.42276 1.24268 1.05276 0.93709 0.80335 1.21887 1.01032 0.92751 0.97838 0.94361 0.96741 0.96227 0.89097 0.90611 0.93108 0.93043 0.88348 0.92558 0.90131 0.89091 0.83357 0.82501 0.81689 0.89532 0.85196 0.85951 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.33 10.38 21.65 0.22 -54.11 16 2 C -0.06 -3.04 5.48 84.86 0.47 -2.58 16 3 Si 0.97 44.67 29.56 68.60 2.03 46.70 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.24 -12.74 10.28 84.03 0.86 -11.88 16 8 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16 9 N -0.61 -29.78 2.91 -665.26 -1.94 -31.72 16 10 C 0.19 8.89 5.20 87.11 0.45 9.34 16 11 C -0.14 -4.95 5.74 31.93 0.18 -4.77 16 12 C 0.12 4.24 2.12 46.14 0.10 4.34 16 13 H 0.11 3.86 4.21 -2.39 -0.01 3.85 16 14 C 0.15 6.05 3.63 45.08 0.16 6.21 16 15 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.12 -4.23 5.08 30.34 0.15 -4.08 16 17 C -0.12 -3.42 6.08 30.50 0.19 -3.24 16 18 C 0.11 3.26 6.19 86.48 0.54 3.80 16 19 N -0.58 -19.40 2.73 -798.12 -2.18 -21.58 16 20 C 0.56 20.21 7.37 86.69 0.64 20.85 16 21 O -0.57 -23.56 15.82 -1.38 -0.02 -23.59 16 22 C -0.18 -5.96 5.37 -19.93 -0.11 -6.06 16 23 C -0.08 -2.11 7.30 22.47 0.16 -1.95 16 24 C -0.15 -3.47 10.05 22.26 0.22 -3.25 16 25 C -0.04 -0.76 10.02 22.23 0.22 -0.53 16 26 C -0.19 -4.18 6.27 -19.54 -0.12 -4.30 16 27 C 0.14 4.06 6.69 23.01 0.15 4.21 16 28 O -0.32 -9.66 10.65 -89.35 -0.95 -10.62 16 29 C 0.04 0.65 8.01 72.57 0.58 1.23 16 30 C -0.10 -1.38 7.12 30.74 0.22 -1.16 16 31 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.01 0.76 7.43 -2.39 -0.02 0.74 16 33 H 0.02 1.00 7.50 -2.39 -0.02 0.98 16 34 H 0.09 2.72 6.36 -2.39 -0.02 2.70 16 35 H 0.08 2.50 6.89 -2.39 -0.02 2.49 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.93 7.21 -2.39 -0.02 1.91 16 38 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.16 7.52 -2.38 -0.02 2.15 16 41 H 0.09 2.73 6.93 -2.39 -0.02 2.71 16 42 H 0.15 4.23 3.47 -2.91 -0.01 4.22 16 43 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.28 366.30 3.22 -69.06 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.99 Total: 19.64 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.08 Total: 6.21 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.89 Total: -107.41 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.97 Total: -34.20 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.28 3.22 -69.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049733117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.888 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds