Wall clock time and date at job start Wed Apr 1 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00041 * 2 1 4 4 H 1.48495 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46646 * 300.00237 * 3 2 1 6 6 H 1.48497 * 109.46954 * 59.99623 * 3 2 1 7 7 C 1.38815 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.48380 * 126.55852 * 359.95616 * 9 7 2 11 11 C 1.55473 * 106.97502 * 185.56069 * 10 9 7 12 12 C 1.53430 * 101.67117 * 22.59775 * 11 10 9 13 13 H 1.09006 * 111.14701 * 77.98397 * 12 11 10 14 14 C 1.45019 * 126.56225 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70230 * 264.06146 * 14 9 7 16 16 C 1.51078 * 119.19979 * 29.34402 * 14 9 7 17 17 C 1.53962 * 107.29799 * 184.30251 * 16 14 9 18 18 C 1.52720 * 111.09156 * 302.24463 * 17 16 14 19 19 N 1.45721 * 116.37391 * 207.27023 * 12 11 10 20 20 C 1.34774 * 122.22821 * 350.08406 * 19 12 11 21 21 O 1.21551 * 119.99685 * 355.73086 * 20 19 12 22 22 C 1.47844 * 120.00063 * 175.73470 * 20 19 12 23 23 C 1.39604 * 120.13143 * 48.51331 * 22 20 19 24 24 C 1.37995 * 119.89419 * 179.74189 * 23 22 20 25 25 C 1.38142 * 120.10262 * 0.55048 * 24 23 22 26 26 C 1.38750 * 120.27923 * 359.70490 * 25 24 23 27 27 C 1.37708 * 120.18129 * 0.02562 * 26 25 24 28 28 C 1.51113 * 107.25681 * 179.97438 * 26 25 24 29 29 O 1.43936 * 105.95514 * 342.29333 * 28 26 25 30 30 C 1.43928 * 104.97116 * 28.51333 * 29 28 26 31 31 H 0.96995 * 120.00560 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.96309 * 304.93982 * 10 9 7 33 33 H 1.08997 * 109.96197 * 66.18069 * 10 9 7 34 34 H 1.08995 * 110.99188 * 140.69615 * 11 10 9 35 35 H 1.09002 * 110.98642 * 264.46837 * 11 10 9 36 36 H 1.09001 * 109.88400 * 302.72809 * 16 14 9 37 37 H 1.09000 * 109.87877 * 63.80502 * 16 14 9 38 38 H 1.09002 * 109.03735 * 182.01096 * 17 16 14 39 39 H 1.09000 * 109.48381 * 62.76483 * 17 16 14 40 40 H 1.09006 * 109.15911 * 288.44281 * 18 17 16 41 41 H 1.08993 * 109.12020 * 169.22740 * 18 17 16 42 42 H 1.08002 * 120.05249 * 0.02562 * 23 22 20 43 43 H 1.07995 * 119.94891 * 180.24908 * 24 23 22 44 44 H 1.08000 * 120.09560 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.14964 * 101.40873 * 28 26 25 46 46 H 1.08994 * 110.16162 * 223.16674 * 28 26 25 47 47 H 1.08996 * 110.15038 * 212.35178 * 30 29 28 48 48 H 1.08996 * 110.15414 * 90.59612 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1485 -2.5577 0.0009 11 6 -0.4302 -4.0799 0.1448 12 6 0.8715 -4.5771 0.7871 13 1 0.8957 -4.3503 1.8530 14 6 1.9025 -3.7186 0.0005 15 1 1.9436 -4.0818 -1.0264 16 6 3.2504 -3.9375 0.6468 17 6 3.6455 -5.4043 0.3961 18 6 2.5928 -6.3600 0.9533 19 7 1.2345 -5.9637 0.5242 20 6 0.3888 -6.8275 -0.0715 21 8 -0.7453 -6.4812 -0.3386 22 6 0.8404 -8.1965 -0.4000 23 6 1.4964 -8.9675 0.5613 24 6 1.9111 -10.2466 0.2510 25 6 1.6881 -10.7601 -1.0118 26 6 1.0414 -9.9969 -1.9732 27 6 0.6177 -8.7211 -1.6745 28 6 0.9560 -10.8347 -3.2279 29 8 1.9246 -11.8872 -3.0675 30 6 2.0199 -12.0914 -1.6460 31 1 -0.4851 0.8400 0.0004 32 1 -0.5850 -2.0174 0.8409 33 1 -0.5657 -2.1890 -0.9361 34 1 -1.2823 -4.2589 0.8005 35 1 -0.5865 -4.5418 -0.8300 36 1 3.9927 -3.2855 0.1862 37 1 3.1870 -3.7316 1.7153 38 1 4.6004 -5.6034 0.8826 39 1 3.7496 -5.5747 -0.6755 40 1 2.6406 -6.3494 2.0423 41 1 2.8012 -7.3684 0.5960 42 1 1.6751 -8.5653 1.5475 43 1 2.4152 -10.8454 0.9952 44 1 0.1141 -8.1283 -2.4238 45 1 -0.0438 -11.2568 -3.3302 46 1 1.1999 -10.2296 -4.1011 47 1 3.0320 -12.3936 -1.3771 48 1 1.3038 -12.8484 -1.3265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049775310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:39 Heat of formation + Delta-G solvation = 2.657147 kcal Electronic energy + Delta-G solvation = -30486.777417 eV Core-core repulsion = 26508.094728 eV Total energy + Delta-G solvation = -3978.682689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18986 -40.24932 -38.16620 -37.10105 -35.45932 -32.66871 -32.47105 -31.94892 -31.48711 -28.99227 -28.30504 -28.22087 -25.77412 -24.59926 -24.30246 -22.43063 -22.09649 -21.46416 -20.89496 -19.69748 -19.07579 -17.23050 -16.87995 -16.71778 -16.49968 -16.10434 -15.56813 -15.16876 -15.11633 -14.68274 -14.59847 -14.23938 -14.04288 -13.85863 -13.63001 -13.33688 -13.22292 -12.95586 -12.80156 -12.53089 -12.46453 -12.23136 -12.11772 -11.78032 -11.59008 -11.33534 -11.08557 -10.87271 -10.70998 -10.58927 -10.48174 -10.37068 -10.08439 -10.03080 -9.86314 -9.62725 -9.27919 -9.17355 -8.83496 -8.60243 -8.27611 -6.83752 -5.70538 -3.04946 0.61130 0.95511 2.69251 2.99541 3.39690 3.41116 3.44862 3.47584 3.53570 3.82694 4.22569 4.38521 4.48994 4.55954 4.77996 4.88588 4.94571 4.98197 5.02292 5.07163 5.15987 5.23547 5.32244 5.34747 5.40408 5.42868 5.56527 5.61720 5.62776 5.75156 5.83477 5.85726 5.90300 5.97836 6.01226 6.06895 6.22674 6.27322 6.29236 6.37613 6.46698 6.53695 6.69755 6.76090 6.86799 7.14375 7.56383 7.60913 7.66815 7.83490 8.24019 8.30472 9.18900 9.82742 10.50732 11.41585 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.002618 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.285520 B =10692.440054 C =10968.625258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.099 3.901 19 N -0.590 5.590 20 C 0.559 3.441 21 O -0.523 6.523 22 C -0.109 4.109 23 C -0.087 4.087 24 C -0.098 4.098 25 C -0.120 4.120 26 C -0.136 4.136 27 C -0.044 4.044 28 C 0.092 3.908 29 O -0.361 6.361 30 C 0.090 3.910 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -23.977 0.764 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.167 4.167 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.023 4.023 19 N -0.322 5.322 20 C 0.346 3.654 21 O -0.400 6.400 22 C -0.112 4.112 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.136 4.136 27 C -0.063 4.063 28 C 0.016 3.984 29 O -0.279 6.279 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.975 -23.649 0.431 24.170 hybrid contribution 0.392 1.080 0.272 1.181 sum 5.367 -22.569 0.703 23.209 Atomic orbital electron populations 1.69950 1.04888 1.24970 1.56851 1.24809 0.95673 0.97637 1.02266 0.86075 0.78687 0.83934 0.77239 1.20538 1.21784 1.21777 1.19031 0.90352 0.82171 1.43845 0.90300 1.44092 1.01791 0.99315 1.86519 1.21747 0.83640 0.88678 1.01158 1.22937 0.94685 0.97938 1.01143 1.22462 0.98860 0.78121 0.99448 0.89966 1.20761 0.91430 0.87197 0.95620 0.96485 1.21466 0.98536 0.94224 1.01266 1.21930 0.97607 0.95662 1.01589 1.22038 0.81653 0.99179 0.99433 1.47928 1.14224 1.11357 1.58701 1.18154 0.85102 0.84113 0.78030 1.90819 1.18612 1.77142 1.53401 1.20008 1.00931 0.95323 0.94983 1.21342 0.96086 0.93776 0.99356 1.20303 1.00864 0.95203 0.95214 1.21227 0.99218 0.96673 0.94894 1.20938 1.00429 0.95034 0.97244 1.20352 0.97002 0.93304 0.95667 1.21773 0.93434 0.87562 0.95670 1.89090 1.61896 1.55104 1.21843 1.21790 1.02811 0.93315 0.80694 0.93752 0.92469 0.94236 0.91900 0.90448 0.91593 0.91554 0.90859 0.91741 0.91335 0.89583 0.84516 0.85039 0.84766 0.90199 0.88145 0.88281 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.46 55.49 0.58 -26.59 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.19 9.95 -15.06 -0.15 -6.34 16 8 H 0.08 2.08 7.34 -52.48 -0.39 1.69 16 9 N -0.59 -15.08 3.35 -163.27 -0.55 -15.63 16 10 C 0.17 4.33 5.47 -1.69 -0.01 4.32 16 11 C -0.13 -2.72 4.95 -25.19 -0.12 -2.84 16 12 C 0.12 2.16 3.31 -66.79 -0.22 1.94 16 13 H 0.08 1.55 8.13 -51.93 -0.42 1.13 16 14 C 0.16 3.29 2.60 -68.35 -0.18 3.11 16 15 H 0.02 0.39 8.03 -51.93 -0.42 -0.02 16 16 C -0.12 -1.95 5.42 -27.20 -0.15 -2.10 16 17 C -0.13 -1.61 5.94 -26.37 -0.16 -1.77 16 18 C 0.10 1.16 5.30 -3.44 -0.02 1.14 16 19 N -0.59 -9.10 2.91 -165.08 -0.48 -9.58 16 20 C 0.56 8.92 7.20 -12.33 -0.09 8.83 16 21 O -0.52 -10.16 13.98 5.32 0.07 -10.08 16 22 C -0.11 -1.37 5.14 -104.94 -0.54 -1.91 16 23 C -0.09 -0.84 7.40 -39.16 -0.29 -1.13 16 24 C -0.10 -0.80 10.03 -39.71 -0.40 -1.19 16 25 C -0.12 -1.07 6.33 -104.25 -0.66 -1.73 16 26 C -0.14 -1.38 6.31 -104.42 -0.66 -2.04 16 27 C -0.04 -0.53 9.72 -39.26 -0.38 -0.91 16 28 C 0.09 0.79 7.63 36.21 0.28 1.06 16 29 O -0.36 -3.48 11.72 -35.23 -0.41 -3.89 16 30 C 0.09 0.67 7.63 36.22 0.28 0.94 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 33 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.71 6.35 -51.93 -0.33 1.38 16 36 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 37 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.83 4.62 -51.93 -0.24 0.59 16 42 H 0.14 1.11 6.89 -52.49 -0.36 0.75 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -33.04 370.86 -10.90 -43.94 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.12 Total: 0.16 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.56 Total: -0.94 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.45 Total: -51.80 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.34 Total: -13.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.04 -10.90 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049775310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.601 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds