Wall clock time and date at job start Wed Apr 1 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00041 * 2 1 4 4 H 1.48495 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46646 * 300.00237 * 3 2 1 6 6 H 1.48497 * 109.46954 * 59.99623 * 3 2 1 7 7 C 1.38815 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.48380 * 126.55852 * 359.95616 * 9 7 2 11 11 C 1.55473 * 106.97502 * 185.56069 * 10 9 7 12 12 C 1.53430 * 101.67117 * 22.59775 * 11 10 9 13 13 H 1.09006 * 111.14701 * 77.98397 * 12 11 10 14 14 C 1.45019 * 126.56225 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70230 * 264.06146 * 14 9 7 16 16 C 1.51078 * 119.19979 * 29.34402 * 14 9 7 17 17 C 1.53962 * 107.29799 * 184.30251 * 16 14 9 18 18 C 1.52720 * 111.09156 * 302.24463 * 17 16 14 19 19 N 1.45721 * 116.37391 * 207.27023 * 12 11 10 20 20 C 1.34774 * 122.22821 * 350.08406 * 19 12 11 21 21 O 1.21551 * 119.99685 * 355.73086 * 20 19 12 22 22 C 1.47844 * 120.00063 * 175.73470 * 20 19 12 23 23 C 1.39604 * 120.13143 * 48.51331 * 22 20 19 24 24 C 1.37995 * 119.89419 * 179.74189 * 23 22 20 25 25 C 1.38142 * 120.10262 * 0.55048 * 24 23 22 26 26 C 1.38750 * 120.27923 * 359.70490 * 25 24 23 27 27 C 1.37708 * 120.18129 * 0.02562 * 26 25 24 28 28 C 1.51113 * 107.25681 * 179.97438 * 26 25 24 29 29 O 1.43936 * 105.95514 * 342.29333 * 28 26 25 30 30 C 1.43928 * 104.97116 * 28.51333 * 29 28 26 31 31 H 0.96995 * 120.00560 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.96309 * 304.93982 * 10 9 7 33 33 H 1.08997 * 109.96197 * 66.18069 * 10 9 7 34 34 H 1.08995 * 110.99188 * 140.69615 * 11 10 9 35 35 H 1.09002 * 110.98642 * 264.46837 * 11 10 9 36 36 H 1.09001 * 109.88400 * 302.72809 * 16 14 9 37 37 H 1.09000 * 109.87877 * 63.80502 * 16 14 9 38 38 H 1.09002 * 109.03735 * 182.01096 * 17 16 14 39 39 H 1.09000 * 109.48381 * 62.76483 * 17 16 14 40 40 H 1.09006 * 109.15911 * 288.44281 * 18 17 16 41 41 H 1.08993 * 109.12020 * 169.22740 * 18 17 16 42 42 H 1.08002 * 120.05249 * 0.02562 * 23 22 20 43 43 H 1.07995 * 119.94891 * 180.24908 * 24 23 22 44 44 H 1.08000 * 120.09560 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.14964 * 101.40873 * 28 26 25 46 46 H 1.08994 * 110.16162 * 223.16674 * 28 26 25 47 47 H 1.08996 * 110.15038 * 212.35178 * 30 29 28 48 48 H 1.08996 * 110.15414 * 90.59612 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1485 -2.5577 0.0009 11 6 -0.4302 -4.0799 0.1448 12 6 0.8715 -4.5771 0.7871 13 1 0.8957 -4.3503 1.8530 14 6 1.9025 -3.7186 0.0005 15 1 1.9436 -4.0818 -1.0264 16 6 3.2504 -3.9375 0.6468 17 6 3.6455 -5.4043 0.3961 18 6 2.5928 -6.3600 0.9533 19 7 1.2345 -5.9637 0.5242 20 6 0.3888 -6.8275 -0.0715 21 8 -0.7453 -6.4812 -0.3386 22 6 0.8404 -8.1965 -0.4000 23 6 1.4964 -8.9675 0.5613 24 6 1.9111 -10.2466 0.2510 25 6 1.6881 -10.7601 -1.0118 26 6 1.0414 -9.9969 -1.9732 27 6 0.6177 -8.7211 -1.6745 28 6 0.9560 -10.8347 -3.2279 29 8 1.9246 -11.8872 -3.0675 30 6 2.0199 -12.0914 -1.6460 31 1 -0.4851 0.8400 0.0004 32 1 -0.5850 -2.0174 0.8409 33 1 -0.5657 -2.1890 -0.9361 34 1 -1.2823 -4.2589 0.8005 35 1 -0.5865 -4.5418 -0.8300 36 1 3.9927 -3.2855 0.1862 37 1 3.1870 -3.7316 1.7153 38 1 4.6004 -5.6034 0.8826 39 1 3.7496 -5.5747 -0.6755 40 1 2.6406 -6.3494 2.0423 41 1 2.8012 -7.3684 0.5960 42 1 1.6751 -8.5653 1.5475 43 1 2.4152 -10.8454 0.9952 44 1 0.1141 -8.1283 -2.4238 45 1 -0.0438 -11.2568 -3.3302 46 1 1.1999 -10.2296 -4.1011 47 1 3.0320 -12.3936 -1.3771 48 1 1.3038 -12.8484 -1.3265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049775310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:38 Heat of formation + Delta-G solvation = -17.935905 kcal Electronic energy + Delta-G solvation = -30487.670399 eV Core-core repulsion = 26508.094728 eV Total energy + Delta-G solvation = -3979.575671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13209 -41.34185 -39.47866 -38.05302 -36.96825 -34.33011 -33.95150 -32.68499 -32.54033 -30.76957 -29.73564 -28.96813 -26.91306 -26.31366 -25.52623 -23.42756 -22.90276 -22.70761 -22.38432 -21.40191 -20.28901 -18.70800 -17.88432 -17.62032 -17.50106 -17.13608 -16.81290 -16.78057 -16.23680 -16.12905 -15.67890 -15.46351 -15.31865 -15.04273 -14.80671 -14.51176 -14.29645 -14.08310 -13.98267 -13.84710 -13.57782 -13.42293 -13.22677 -13.17175 -12.89503 -12.77737 -12.68228 -12.31463 -12.08666 -11.99926 -11.88628 -11.82383 -11.74287 -11.61310 -11.47199 -11.08467 -10.80093 -10.54737 -9.99531 -9.66108 -9.54781 -8.93845 -7.85712 -5.22984 -0.19090 0.22051 1.45097 1.46536 1.55269 1.57165 1.86249 2.49061 2.56183 2.92995 3.08444 3.31739 3.33361 3.50219 3.58644 3.85469 3.86474 3.97457 3.99070 4.05826 4.16886 4.22896 4.29937 4.34281 4.41415 4.43987 4.52303 4.54477 4.56535 4.63127 4.73347 4.74354 4.76139 4.86355 4.91719 4.99461 5.05419 5.11003 5.13570 5.21199 5.25849 5.27544 5.40194 5.46813 5.55292 5.57740 5.64368 5.69349 5.77705 6.15776 6.40463 7.03463 7.06654 7.73495 8.43426 9.26409 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.002618 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.285520 B =10692.440054 C =10968.625258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.112 4.112 12 C 0.131 3.869 13 H 0.088 0.912 14 C 0.153 3.847 15 H -0.004 1.004 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.095 3.905 19 N -0.590 5.590 20 C 0.555 3.445 21 O -0.571 6.571 22 C -0.129 4.129 23 C -0.081 4.081 24 C -0.086 4.086 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.062 4.062 28 C 0.091 3.909 29 O -0.379 6.379 30 C 0.087 3.913 31 H 0.246 0.754 32 H 0.028 0.972 33 H -0.002 1.002 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.122 0.878 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -27.295 2.472 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.360 4.360 8 H 0.108 0.892 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.151 4.151 12 C 0.026 3.974 13 H 0.106 0.894 14 C 0.045 3.955 15 H 0.013 0.987 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.026 4.026 19 N -0.321 5.321 20 C 0.345 3.655 21 O -0.451 6.451 22 C -0.132 4.132 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.081 4.081 28 C 0.015 3.985 29 O -0.297 6.297 30 C 0.012 3.988 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.135 0.865 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.140 0.860 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.305 -27.021 2.146 28.350 hybrid contribution -0.627 2.006 -0.328 2.127 sum 7.678 -25.015 1.818 26.230 Atomic orbital electron populations 1.70179 1.06550 1.25249 1.58471 1.25711 0.96547 1.01230 1.02784 0.84987 0.78370 0.79311 0.76541 1.18472 1.22397 1.21844 1.19453 0.91034 0.83051 1.42465 0.89229 1.44349 1.01990 1.00912 1.86369 1.21433 0.83999 0.90992 0.97761 1.22659 0.96551 0.94950 1.00930 1.22053 0.96091 0.80303 0.98922 0.89436 1.20934 0.94457 0.84950 0.95167 0.98677 1.21444 0.95349 0.97397 1.00778 1.21913 0.99677 0.92406 1.01847 1.22399 0.78852 1.00134 1.01183 1.47992 1.15926 1.09569 1.58617 1.18755 0.84475 0.85442 0.76859 1.90784 1.20782 1.78426 1.55109 1.19738 1.03526 0.93735 0.96226 1.21574 0.94940 0.94090 0.99336 1.20692 0.99573 0.94577 0.95508 1.21612 0.97917 0.97099 0.95014 1.21065 1.00556 0.94514 0.98554 1.20289 0.98051 0.94233 0.95554 1.21844 0.93975 0.87436 0.95289 1.89074 1.62132 1.55171 1.23372 1.22039 1.04715 0.92691 0.79398 0.94450 0.95338 0.98350 0.91583 0.91757 0.92679 0.91095 0.86756 0.92449 0.88473 0.86837 0.82348 0.81074 0.86462 0.89077 0.87810 0.86017 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.38 10.46 21.65 0.23 -59.15 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.23 -12.99 9.95 84.03 0.84 -12.16 16 8 H 0.09 4.72 7.34 -2.91 -0.02 4.70 16 9 N -0.61 -32.43 3.35 -670.47 -2.25 -34.67 16 10 C 0.18 9.91 5.47 86.87 0.48 10.38 16 11 C -0.11 -5.04 4.95 31.59 0.16 -4.89 16 12 C 0.13 4.98 3.31 46.15 0.15 5.13 16 13 H 0.09 3.25 8.13 -2.38 -0.02 3.24 16 14 C 0.15 6.42 2.60 45.51 0.12 6.54 16 15 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 16 C -0.11 -3.56 5.42 30.29 0.16 -3.39 16 17 C -0.12 -2.58 5.94 30.83 0.18 -2.40 16 18 C 0.09 1.84 5.30 86.03 0.46 2.30 16 19 N -0.59 -17.53 2.91 -794.46 -2.31 -19.84 16 20 C 0.56 17.71 7.20 86.79 0.63 18.34 16 21 O -0.57 -23.18 13.98 -3.88 -0.05 -23.24 16 22 C -0.13 -3.08 5.14 -20.07 -0.10 -3.18 16 23 C -0.08 -1.26 7.40 22.54 0.17 -1.09 16 24 C -0.09 -0.98 10.03 22.19 0.22 -0.76 16 25 C -0.12 -1.66 6.33 -19.62 -0.12 -1.79 16 26 C -0.15 -2.75 6.31 -19.74 -0.12 -2.87 16 27 C -0.06 -1.47 9.72 22.48 0.22 -1.25 16 28 C 0.09 1.43 7.63 71.37 0.54 1.98 16 29 O -0.38 -6.38 11.72 -148.98 -1.75 -8.12 16 30 C 0.09 0.96 7.63 71.38 0.54 1.50 16 31 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.03 1.68 7.19 -2.39 -0.02 1.66 16 33 H 0.00 -0.11 7.81 -2.39 -0.02 -0.13 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 3.06 6.35 -2.39 -0.02 3.04 16 36 H 0.05 1.87 7.73 -2.39 -0.02 1.85 16 37 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.11 1.66 4.62 -2.39 -0.01 1.65 16 42 H 0.16 1.74 6.89 -2.91 -0.02 1.72 16 43 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -78.09 370.86 1.84 -76.25 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.97 Total: 11.70 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.98 Total: 8.79 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.33 Total: -113.66 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.80 Total: -31.36 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.09 1.84 -76.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049775310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.310 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds