Wall clock time and date at job start Wed Apr 1 2020 00:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.63739 * 2 1 4 4 C 1.54331 * 111.00236 * 236.92163 * 2 1 3 5 5 N 1.47021 * 107.26741 * 219.59860 * 4 2 1 6 6 C 1.34778 * 125.65161 * 178.85017 * 5 4 2 7 7 O 1.21568 * 119.99732 * 3.40496 * 6 5 4 8 8 C 1.47674 * 120.00194 * 183.40325 * 6 5 4 9 9 C 1.40215 * 120.50044 * 153.16785 * 8 6 5 10 10 C 1.38041 * 118.35743 * 179.97438 * 9 8 6 11 11 C 1.39140 * 119.25253 * 359.97438 * 10 9 8 12 12 N 1.39551 * 119.52750 * 179.97438 * 11 10 9 13 13 C 1.34882 * 126.84972 * 179.97438 * 12 11 10 14 14 N 1.30794 * 108.00403 * 179.97438 * 13 12 11 15 15 C 1.33324 * 109.85272 * 0.02562 * 14 13 12 16 16 N 1.30700 * 109.02691 * 359.97438 * 15 14 13 17 17 N 1.32431 * 120.94646 * 0.25411 * 11 10 9 18 18 C 1.31625 * 121.80453 * 359.47567 * 17 11 10 19 19 C 1.47427 * 108.70136 * 358.58541 * 5 4 2 20 20 C 1.54913 * 104.83073 * 24.35722 * 19 5 4 21 21 H 1.08997 * 111.00207 * 204.91254 * 20 19 5 22 22 N 1.46504 * 111.00289 * 81.10092 * 20 19 5 23 23 C 1.36935 * 119.99932 * 86.45562 * 22 20 19 24 24 H 1.07998 * 119.99978 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00133 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99742 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00127 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.46963 * 60.00640 * 27 25 23 29 29 H 1.48503 * 109.46967 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46949 * 300.00191 * 27 25 23 31 31 H 1.08999 * 109.47577 * 296.85763 * 1 2 3 32 32 H 1.09003 * 109.47621 * 56.86476 * 1 2 3 33 33 H 1.09010 * 109.46865 * 176.86062 * 1 2 3 34 34 H 1.09001 * 109.99538 * 100.12557 * 4 2 1 35 35 H 1.09001 * 109.78251 * 338.95809 * 4 2 1 36 36 H 1.08001 * 120.82109 * 359.95462 * 9 8 6 37 37 H 1.07997 * 120.37500 * 180.02562 * 10 9 8 38 38 H 1.07993 * 125.99514 * 359.96367 * 13 12 11 39 39 H 1.07998 * 125.48594 * 180.02562 * 15 14 13 40 40 H 1.07997 * 119.68814 * 180.26349 * 18 17 11 41 41 H 1.09002 * 110.36908 * 143.19167 * 19 5 4 42 42 H 1.09000 * 110.36790 * 265.51977 * 19 5 4 43 43 H 0.96999 * 119.99704 * 266.45088 * 22 20 19 44 44 H 0.97003 * 120.00550 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7354 6 6 4.0005 -2.3784 -1.4844 7 8 3.7706 -2.5017 -2.6717 8 6 5.1027 -3.1397 -0.8628 9 6 5.5190 -4.3626 -1.4080 10 6 6.5538 -5.0369 -0.7916 11 6 7.1455 -4.4857 0.3408 12 7 8.1917 -5.1628 0.9688 13 6 8.8676 -4.7670 2.0669 14 7 9.7680 -5.6764 2.3370 15 6 9.7000 -6.6611 1.4408 16 7 8.7507 -6.3923 0.5836 17 7 6.7263 -3.3305 0.8342 18 6 5.7466 -2.6520 0.2753 19 6 3.4652 -1.2446 0.6913 20 6 2.0789 -0.7933 1.2151 21 1 2.1820 -0.1490 2.0882 22 7 1.2298 -1.9487 1.5160 23 6 1.3008 -2.5491 2.7446 24 1 1.9825 -2.1708 3.4920 25 6 0.4959 -3.6435 3.0299 26 7 -0.3352 -4.1042 2.1193 27 14 0.5934 -4.4630 4.7057 28 1 0.2449 -3.4770 5.7599 29 1 -0.3600 -5.6005 4.7566 30 1 1.9730 -4.9636 4.9324 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5617 -0.8605 33 1 -0.3633 -1.0262 -0.0563 34 1 2.3848 -0.0961 -1.9951 35 1 1.3216 -1.4702 -1.5823 36 1 5.0417 -4.7671 -2.2883 37 1 6.9009 -5.9812 -1.1842 38 1 8.6955 -3.8586 2.6250 39 1 10.3276 -7.5399 1.4261 40 1 5.4350 -1.7111 0.7042 41 1 3.7993 -2.1362 1.2219 42 1 4.1929 -0.4407 0.8029 43 1 0.6172 -2.2882 0.8449 44 1 -0.8975 -4.8692 2.3184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054956716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:33 Heat of formation + Delta-G solvation = 136.834123 kcal Electronic energy + Delta-G solvation = -29508.314815 eV Core-core repulsion = 25464.202883 eV Total energy + Delta-G solvation = -4044.111931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61473 -40.85512 -39.44805 -37.66424 -34.61651 -34.01296 -32.94467 -32.61387 -31.54857 -30.75640 -30.20968 -28.00859 -26.56589 -24.95190 -24.47144 -23.87408 -22.64707 -21.87616 -21.66383 -19.85958 -19.38802 -18.88225 -17.78464 -17.18812 -16.63064 -16.32641 -16.05185 -15.72845 -15.21330 -14.89614 -14.72153 -14.43044 -14.35408 -14.01172 -13.91935 -13.56989 -13.38335 -13.02240 -12.92524 -12.69637 -12.51145 -12.21658 -12.05898 -11.68849 -11.21226 -11.19702 -10.97984 -10.82139 -10.57207 -10.48124 -10.38060 -10.28440 -10.23004 -10.18765 -10.04358 -9.75339 -9.68686 -9.12139 -8.88436 -8.41054 -7.12993 -5.91119 -3.21615 0.07978 0.91039 1.49015 1.64679 2.59067 2.82131 3.09492 3.34858 3.40144 3.41332 3.62000 3.85586 4.04337 4.15863 4.40941 4.46193 4.56740 4.68557 4.81537 4.94448 4.95943 5.01440 5.20773 5.32526 5.41362 5.51826 5.55773 5.61376 5.70114 5.78654 5.83452 5.87505 6.00003 6.02208 6.08253 6.09898 6.23208 6.25523 6.35710 6.46047 6.58207 6.62236 6.82209 7.26467 7.55924 7.66393 7.73273 8.22824 8.26385 9.38697 9.92641 10.26894 11.30558 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.003740 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.789678 B = 7484.113825 C = 9529.092392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.592 5.592 6 C 0.578 3.422 7 O -0.545 6.545 8 C -0.175 4.175 9 C 0.003 3.997 10 C -0.162 4.162 11 C 0.373 3.627 12 N -0.332 5.332 13 C 0.295 3.705 14 N -0.542 5.542 15 C 0.213 3.787 16 N -0.309 5.309 17 N -0.502 5.502 18 C 0.160 3.840 19 C 0.051 3.949 20 C 0.172 3.828 21 H 0.074 0.926 22 N -0.708 5.708 23 C -0.251 4.251 24 H 0.072 0.928 25 C -0.004 4.004 26 N -0.927 5.927 27 Si 0.905 3.095 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.230 0.770 39 H 0.226 0.774 40 H 0.187 0.813 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.388 0.612 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 4.288 -4.614 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.005 4.005 5 N -0.324 5.324 6 C 0.366 3.634 7 O -0.424 6.424 8 C -0.181 4.181 9 C -0.024 4.024 10 C -0.185 4.185 11 C 0.145 3.855 12 N -0.117 5.117 13 C -0.001 4.001 14 N -0.267 5.267 15 C -0.090 4.090 16 N -0.134 5.134 17 N -0.215 5.215 18 C 0.002 3.998 19 C -0.075 4.075 20 C 0.060 3.940 21 H 0.092 0.908 22 N -0.349 5.349 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.736 3.264 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.246 0.754 39 H 0.243 0.757 40 H 0.204 0.796 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.223 0.777 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.316 3.948 -4.691 15.574 hybrid contribution -0.594 -0.936 0.196 1.126 sum 13.722 3.012 -4.495 14.750 Atomic orbital electron populations 1.21605 0.93304 1.03046 1.01066 1.22510 0.97232 0.98611 0.94919 0.90013 1.22014 0.87391 0.94410 0.96690 1.48185 1.29334 1.43115 1.11719 1.17430 0.81398 0.78960 0.85623 1.90773 1.70829 1.66000 1.14763 1.20977 1.00129 0.98107 0.98903 1.21610 0.91962 0.91305 0.97497 1.21572 0.98083 1.02765 0.96043 1.17852 0.87402 0.89744 0.90476 1.47467 1.25971 1.16206 1.22102 1.26499 0.87366 0.99286 0.86899 1.70738 1.23893 1.03764 1.28349 1.26290 0.95147 0.98854 0.88680 1.78171 1.14375 0.96371 1.24529 1.66881 1.15720 1.06320 1.32531 1.23486 0.87958 0.98664 0.89716 1.23864 1.02162 1.00764 0.80717 1.21366 0.88244 0.90013 0.94418 0.90804 1.42380 1.45232 1.32202 1.15063 1.19154 1.18871 1.09320 0.90832 0.91006 1.24735 0.98807 0.98740 0.97871 1.69641 1.27133 1.27112 1.33501 0.86315 0.77267 0.79014 0.83849 1.21030 1.21653 1.21276 0.91988 0.93572 0.91241 0.91831 0.91144 0.82597 0.82779 0.75431 0.75748 0.79635 0.89369 0.91773 0.77671 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.73 37.16 0.32 -1.58 16 2 C -0.11 -1.55 3.40 -88.78 -0.30 -1.85 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.74 6.48 -3.06 -0.02 1.72 16 5 N -0.59 -9.27 3.33 -171.68 -0.57 -9.85 16 6 C 0.58 9.64 7.65 -12.41 -0.09 9.54 16 7 O -0.54 -10.44 17.04 5.31 0.09 -10.35 16 8 C -0.18 -2.56 5.72 -104.81 -0.60 -3.16 16 9 C 0.00 0.04 9.71 -38.91 -0.38 -0.34 16 10 C -0.16 -2.06 9.70 -39.32 -0.38 -2.44 16 11 C 0.37 5.03 7.56 -154.45 -1.17 3.86 16 12 N -0.33 -4.30 3.80 -13.32 -0.05 -4.35 16 13 C 0.30 3.38 12.25 -90.28 -1.11 2.28 16 14 N -0.54 -6.39 11.19 -15.72 -0.18 -6.57 16 15 C 0.21 2.23 13.03 -91.75 -1.20 1.03 16 16 N -0.31 -3.85 11.99 29.30 0.35 -3.50 16 17 N -0.50 -6.69 9.86 -11.98 -0.12 -6.81 16 18 C 0.16 2.12 9.12 -17.14 -0.16 1.96 16 19 C 0.05 0.74 4.72 -2.53 -0.01 0.73 16 20 C 0.17 2.83 3.44 -65.78 -0.23 2.61 16 21 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 22 N -0.71 -15.56 4.74 -51.35 -0.24 -15.80 16 23 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 27 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.20 6.38 -51.92 -0.33 0.87 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 36 H 0.16 1.90 7.94 -52.49 -0.42 1.49 16 37 H 0.15 1.75 7.71 -52.49 -0.40 1.34 16 38 H 0.23 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.23 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.19 2.12 4.54 -52.49 -0.24 1.88 16 41 H 0.09 1.44 6.15 -51.93 -0.32 1.12 16 42 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 43 H 0.39 9.34 6.09 -40.82 -0.25 9.09 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -32.42 369.71 -10.25 -42.67 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.25 Total: 10.71 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -5.56 Total: 7.69 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -0.08 Total: -72.70 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.42 -10.25 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054956716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.501 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds