Wall clock time and date at job start Wed Apr 1 2020 00:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.63739 * 2 1 4 4 C 1.54331 * 111.00236 * 236.92163 * 2 1 3 5 5 N 1.47021 * 107.26741 * 219.59860 * 4 2 1 6 6 C 1.34778 * 125.65161 * 178.85017 * 5 4 2 7 7 O 1.21568 * 119.99732 * 3.40496 * 6 5 4 8 8 C 1.47674 * 120.00194 * 183.40325 * 6 5 4 9 9 C 1.40215 * 120.50044 * 153.16785 * 8 6 5 10 10 C 1.38041 * 118.35743 * 179.97438 * 9 8 6 11 11 C 1.39140 * 119.25253 * 359.97438 * 10 9 8 12 12 N 1.39551 * 119.52750 * 179.97438 * 11 10 9 13 13 C 1.34882 * 126.84972 * 179.97438 * 12 11 10 14 14 N 1.30794 * 108.00403 * 179.97438 * 13 12 11 15 15 C 1.33324 * 109.85272 * 0.02562 * 14 13 12 16 16 N 1.30700 * 109.02691 * 359.97438 * 15 14 13 17 17 N 1.32431 * 120.94646 * 0.25411 * 11 10 9 18 18 C 1.31625 * 121.80453 * 359.47567 * 17 11 10 19 19 C 1.47427 * 108.70136 * 358.58541 * 5 4 2 20 20 C 1.54913 * 104.83073 * 24.35722 * 19 5 4 21 21 H 1.08997 * 111.00207 * 204.91254 * 20 19 5 22 22 N 1.46504 * 111.00289 * 81.10092 * 20 19 5 23 23 C 1.36935 * 119.99932 * 86.45562 * 22 20 19 24 24 H 1.07998 * 119.99978 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00133 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99742 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00127 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.46963 * 60.00640 * 27 25 23 29 29 H 1.48503 * 109.46967 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46949 * 300.00191 * 27 25 23 31 31 H 1.08999 * 109.47577 * 296.85763 * 1 2 3 32 32 H 1.09003 * 109.47621 * 56.86476 * 1 2 3 33 33 H 1.09010 * 109.46865 * 176.86062 * 1 2 3 34 34 H 1.09001 * 109.99538 * 100.12557 * 4 2 1 35 35 H 1.09001 * 109.78251 * 338.95809 * 4 2 1 36 36 H 1.08001 * 120.82109 * 359.95462 * 9 8 6 37 37 H 1.07997 * 120.37500 * 180.02562 * 10 9 8 38 38 H 1.07993 * 125.99514 * 359.96367 * 13 12 11 39 39 H 1.07998 * 125.48594 * 180.02562 * 15 14 13 40 40 H 1.07997 * 119.68814 * 180.26349 * 18 17 11 41 41 H 1.09002 * 110.36908 * 143.19167 * 19 5 4 42 42 H 1.09000 * 110.36790 * 265.51977 * 19 5 4 43 43 H 0.96999 * 119.99704 * 266.45088 * 22 20 19 44 44 H 0.97003 * 120.00550 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7354 6 6 4.0005 -2.3784 -1.4844 7 8 3.7706 -2.5017 -2.6717 8 6 5.1027 -3.1397 -0.8628 9 6 5.5190 -4.3626 -1.4080 10 6 6.5538 -5.0369 -0.7916 11 6 7.1455 -4.4857 0.3408 12 7 8.1917 -5.1628 0.9688 13 6 8.8676 -4.7670 2.0669 14 7 9.7680 -5.6764 2.3370 15 6 9.7000 -6.6611 1.4408 16 7 8.7507 -6.3923 0.5836 17 7 6.7263 -3.3305 0.8342 18 6 5.7466 -2.6520 0.2753 19 6 3.4652 -1.2446 0.6913 20 6 2.0789 -0.7933 1.2151 21 1 2.1820 -0.1490 2.0882 22 7 1.2298 -1.9487 1.5160 23 6 1.3008 -2.5491 2.7446 24 1 1.9825 -2.1708 3.4920 25 6 0.4959 -3.6435 3.0299 26 7 -0.3352 -4.1042 2.1193 27 14 0.5934 -4.4630 4.7057 28 1 0.2449 -3.4770 5.7599 29 1 -0.3600 -5.6005 4.7566 30 1 1.9730 -4.9636 4.9324 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5617 -0.8605 33 1 -0.3633 -1.0262 -0.0563 34 1 2.3848 -0.0961 -1.9951 35 1 1.3216 -1.4702 -1.5823 36 1 5.0417 -4.7671 -2.2883 37 1 6.9009 -5.9812 -1.1842 38 1 8.6955 -3.8586 2.6250 39 1 10.3276 -7.5399 1.4261 40 1 5.4350 -1.7111 0.7042 41 1 3.7993 -2.1362 1.2219 42 1 4.1929 -0.4407 0.8029 43 1 0.6172 -2.2882 0.8449 44 1 -0.8975 -4.8692 2.3184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054956716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:32 Heat of formation + Delta-G solvation = 118.470247 kcal Electronic energy + Delta-G solvation = -29509.111132 eV Core-core repulsion = 25464.202883 eV Total energy + Delta-G solvation = -4044.908249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.50231 -41.96255 -40.61138 -38.98276 -35.77699 -35.50571 -34.05380 -33.89501 -32.46059 -32.31822 -31.31097 -29.45510 -27.70748 -26.11981 -25.76656 -25.26595 -23.80104 -22.89446 -22.62415 -21.05469 -20.65797 -19.83252 -19.40113 -18.52591 -17.80544 -17.39176 -17.15515 -16.69068 -16.53108 -16.40592 -15.74588 -15.71203 -15.56742 -15.18236 -15.05470 -14.72414 -14.61788 -14.46164 -14.13947 -13.92875 -13.50681 -13.40803 -13.34415 -13.00143 -12.90067 -12.78559 -12.25753 -12.21524 -12.18068 -11.90673 -11.51629 -11.43696 -11.37570 -11.33038 -11.24885 -11.08809 -10.93784 -10.85156 -9.92932 -9.69145 -8.93800 -7.92378 -5.19048 -0.94261 -0.10499 0.55085 0.72742 1.47762 1.48148 1.53766 1.58920 1.77295 1.93021 2.53642 2.56441 2.90783 3.19943 3.26960 3.32744 3.39663 3.55352 3.65504 3.76842 3.89143 3.94847 3.95834 4.05746 4.13469 4.37943 4.43630 4.55808 4.63995 4.68182 4.72766 4.75178 4.87466 4.93129 4.98524 5.02564 5.06894 5.20482 5.24991 5.27157 5.39645 5.55597 5.62450 5.65842 6.25926 6.29258 6.42347 6.84632 6.96678 7.37360 8.14273 8.34562 9.30764 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.003740 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.789678 B = 7484.113825 C = 9529.092392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 H 0.124 0.876 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.574 3.426 7 O -0.579 6.579 8 C -0.195 4.195 9 C 0.001 3.999 10 C -0.163 4.163 11 C 0.369 3.631 12 N -0.345 5.345 13 C 0.295 3.705 14 N -0.556 5.556 15 C 0.220 3.780 16 N -0.335 5.335 17 N -0.503 5.503 18 C 0.167 3.833 19 C 0.058 3.942 20 C 0.158 3.842 21 H 0.091 0.909 22 N -0.722 5.722 23 C -0.230 4.230 24 H 0.085 0.915 25 C -0.071 4.071 26 N -0.969 5.969 27 Si 0.959 3.041 28 H -0.274 1.274 29 H -0.305 1.305 30 H -0.284 1.284 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.251 0.749 39 H 0.264 0.736 40 H 0.206 0.794 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.103 6.015 -3.649 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 H 0.142 0.858 4 C -0.007 4.007 5 N -0.324 5.324 6 C 0.363 3.637 7 O -0.461 6.461 8 C -0.201 4.201 9 C -0.026 4.026 10 C -0.185 4.185 11 C 0.141 3.859 12 N -0.130 5.130 13 C 0.000 4.000 14 N -0.282 5.282 15 C -0.082 4.082 16 N -0.160 5.160 17 N -0.216 5.216 18 C 0.009 3.991 19 C -0.067 4.067 20 C 0.048 3.952 21 H 0.109 0.891 22 N -0.361 5.361 23 C -0.362 4.362 24 H 0.103 0.897 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.790 3.210 28 H -0.200 1.200 29 H -0.232 1.232 30 H -0.211 1.211 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.178 0.822 37 H 0.183 0.817 38 H 0.267 0.733 39 H 0.279 0.721 40 H 0.222 0.778 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.207 0.793 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.503 5.729 -3.694 17.855 hybrid contribution -1.149 -1.415 -0.106 1.826 sum 15.354 4.314 -3.800 16.395 Atomic orbital electron populations 1.21539 0.94057 1.00959 1.02043 1.22506 0.96492 1.00011 0.92625 0.85782 1.22085 0.86636 0.94201 0.97813 1.48288 1.29177 1.42856 1.12116 1.17737 0.81783 0.78843 0.85343 1.90744 1.72047 1.67073 1.16217 1.20939 1.00414 0.98714 1.00015 1.21730 0.92051 0.91169 0.97655 1.21654 0.97795 1.03085 0.95946 1.18063 0.87447 0.89797 0.90556 1.47542 1.26224 1.16616 1.22663 1.27048 0.86753 0.99807 0.86415 1.70801 1.24214 1.04310 1.28874 1.27105 0.94456 0.99291 0.87366 1.78164 1.15430 0.96660 1.25738 1.66949 1.15808 1.06370 1.32469 1.23712 0.87420 0.99055 0.88961 1.23835 1.01715 1.01502 0.79608 1.21730 0.88465 0.88702 0.96329 0.89142 1.42566 1.46108 1.33629 1.13792 1.19600 1.16788 1.07958 0.91865 0.89714 1.25394 0.99903 1.00459 1.00601 1.69800 1.29022 1.27881 1.35243 0.85422 0.76654 0.77845 0.81101 1.19988 1.23219 1.21108 0.92280 0.91063 0.95036 0.89881 0.93953 0.82191 0.81744 0.73293 0.72070 0.77826 0.91096 0.86869 0.79323 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.73 71.98 0.63 -2.90 16 2 C -0.10 -2.39 3.40 -9.60 -0.03 -2.42 16 3 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 4 C 0.11 3.23 6.48 86.73 0.56 3.80 16 5 N -0.59 -17.73 3.33 -815.36 -2.71 -20.44 16 6 C 0.57 18.90 7.65 86.74 0.66 19.56 16 7 O -0.58 -22.43 17.04 -3.93 -0.07 -22.50 16 8 C -0.19 -5.57 5.72 -19.98 -0.11 -5.68 16 9 C 0.00 0.01 9.71 22.70 0.22 0.23 16 10 C -0.16 -4.04 9.70 22.44 0.22 -3.82 16 11 C 0.37 9.54 7.56 132.87 1.00 10.54 16 12 N -0.35 -8.46 3.80 -196.07 -0.75 -9.21 16 13 C 0.29 6.24 12.25 180.23 2.21 8.45 16 14 N -0.56 -12.04 11.19 -203.64 -2.28 -14.32 16 15 C 0.22 4.15 13.03 180.74 2.35 6.50 16 16 N -0.33 -7.89 11.99 -61.20 -0.73 -8.62 16 17 N -0.50 -12.57 9.86 -191.81 -1.89 -14.47 16 18 C 0.17 4.13 9.12 85.04 0.78 4.90 16 19 C 0.06 1.52 4.72 86.86 0.41 1.93 16 20 C 0.16 4.80 3.44 46.38 0.16 4.96 16 21 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 22 N -0.72 -31.41 4.74 -316.37 -1.50 -32.91 16 23 C -0.23 -11.40 9.98 84.03 0.84 -10.57 16 24 H 0.09 3.91 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 26 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 27 Si 0.96 44.46 29.55 68.60 2.03 46.49 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 30 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.10 6.38 -2.38 -0.02 1.09 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.43 7.78 -2.39 -0.02 1.41 16 36 H 0.16 4.00 7.94 -2.91 -0.02 3.98 16 37 H 0.17 3.65 7.71 -2.91 -0.02 3.63 16 38 H 0.25 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.26 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.21 4.04 4.54 -2.91 -0.01 4.03 16 41 H 0.07 2.16 6.15 -2.39 -0.01 2.15 16 42 H 0.11 1.94 7.31 -2.39 -0.02 1.92 16 43 H 0.37 18.44 6.09 -92.71 -0.56 17.87 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -72.12 369.71 3.24 -68.89 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.49 Total: 32.03 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 10.36 Total: 32.10 kcal Atomic # 7 Polarization: -147.42 SS G_CDS: -9.58 Total: -157.00 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.12 3.24 -68.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054956716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.357 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds