Wall clock time and date at job start Wed Apr 1 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35041 * 126.40039 * 2 1 4 4 N 1.30497 * 108.69992 * 179.97438 * 3 2 1 5 5 C 1.34131 * 109.25720 * 359.76272 * 4 3 2 6 6 C 1.34667 * 108.01744 * 0.38814 * 5 4 3 7 7 C 1.50702 * 126.58640 * 179.87667 * 6 5 4 8 8 H 1.09000 * 110.77764 * 201.45422 * 7 6 5 9 9 C 1.54319 * 110.72116 * 78.21391 * 7 6 5 10 10 N 1.47019 * 107.27289 * 219.43822 * 9 7 6 11 11 C 1.34775 * 125.64741 * 178.98221 * 10 9 7 12 12 O 1.21517 * 119.99969 * 353.97845 * 11 10 9 13 13 C 1.48138 * 119.99950 * 173.97631 * 11 10 9 14 14 C 1.40115 * 121.14231 * 350.44841 * 13 11 10 15 15 C 1.38498 * 117.82074 * 179.97438 * 14 13 11 16 16 N 1.31918 * 119.97047 * 0.02562 * 15 14 13 17 17 N 1.28273 * 122.51659 * 0.02562 * 16 15 14 18 18 C 1.31933 * 122.32645 * 359.71664 * 17 16 15 19 19 C 1.47418 * 108.70300 * 358.94469 * 10 9 7 20 20 C 1.54909 * 104.83334 * 24.12607 * 19 10 9 21 21 H 1.08994 * 111.04408 * 81.08166 * 20 19 10 22 22 N 1.46508 * 111.00354 * 204.91872 * 20 19 10 23 23 C 1.36933 * 119.99679 * 267.19245 * 22 20 19 24 24 H 1.07994 * 120.00336 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99560 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00360 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99799 * 179.72689 * 25 23 22 28 28 H 1.48497 * 109.46897 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47378 * 120.00153 * 27 25 23 30 30 H 1.48504 * 109.47101 * 240.00221 * 27 25 23 31 31 H 1.08999 * 109.47045 * 270.00189 * 1 2 3 32 32 H 1.08998 * 109.46802 * 29.99845 * 1 2 3 33 33 H 1.08994 * 109.47091 * 150.00015 * 1 2 3 34 34 H 1.08001 * 125.65060 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.98950 * 180.25191 * 5 4 3 36 36 H 1.08998 * 109.88293 * 338.86152 * 9 7 6 37 37 H 1.09007 * 109.88351 * 100.02299 * 9 7 6 38 38 H 1.08003 * 121.08728 * 359.96075 * 14 13 11 39 39 H 1.08004 * 120.01676 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.17520 * 180.27589 * 18 17 16 41 41 H 1.09003 * 110.36524 * 265.28575 * 19 10 9 42 42 H 1.09000 * 110.36727 * 142.96293 * 19 10 9 43 43 H 0.97002 * 119.99520 * 87.19319 * 22 20 19 44 44 H 0.97000 * 120.00013 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6902 0.0006 5 6 3.5460 -0.6506 0.0062 6 6 2.2772 -1.1018 0.0005 7 6 1.8363 -2.5429 0.0011 8 1 0.8181 -2.6359 -0.3767 9 6 1.9512 -3.1485 1.4159 10 7 2.4498 -4.5231 1.2632 11 6 2.7043 -5.3826 2.2696 12 8 2.6280 -5.0076 3.4229 13 6 3.0772 -6.7846 1.9698 14 6 2.9814 -7.2977 0.6695 15 6 3.3486 -8.6176 0.4667 16 7 3.7709 -9.3474 1.4812 17 7 3.8600 -8.8841 2.6741 18 6 3.5402 -7.6396 2.9732 19 6 2.6243 -4.8058 -0.1730 20 6 2.8124 -3.4160 -0.8308 21 1 3.8391 -3.0669 -0.7212 22 7 2.4186 -3.4452 -2.2417 23 6 3.3550 -3.6958 -3.2089 24 1 4.3837 -3.8724 -2.9317 25 6 2.9817 -3.7239 -4.5456 26 7 1.7278 -3.5092 -4.8834 27 14 4.2605 -4.0582 -5.8656 28 1 5.5872 -4.2593 -5.2297 29 1 3.8841 -5.2798 -6.6214 30 1 4.3266 -2.9018 -6.7949 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9336 2.1144 0.0004 35 1 4.4368 -1.2613 0.0118 36 1 2.6512 -2.5644 2.0134 37 1 0.9720 -3.1604 1.8947 38 1 2.6326 -6.6840 -0.1479 39 1 3.2883 -9.0495 -0.5214 40 1 3.6327 -7.2845 3.9890 41 1 1.7378 -5.2981 -0.5732 42 1 3.5075 -5.4241 -0.3334 43 1 1.4945 -3.2869 -2.4906 44 1 1.4671 -3.5285 -5.8175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070693721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:46 Heat of formation + Delta-G solvation = 112.812302 kcal Electronic energy + Delta-G solvation = -29818.511560 eV Core-core repulsion = 25773.357965 eV Total energy + Delta-G solvation = -4045.153596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.06268 -42.37661 -40.90986 -38.97105 -35.98979 -35.02678 -34.77140 -33.61399 -33.44368 -32.31736 -29.50101 -29.04497 -27.73311 -26.98447 -25.77685 -25.51397 -24.15375 -23.00756 -21.75119 -21.31962 -20.59632 -19.26946 -19.00385 -18.25472 -17.98385 -17.72589 -17.27393 -16.96393 -16.49864 -16.40872 -16.01475 -15.72975 -15.56355 -15.35871 -15.11858 -14.77996 -14.65308 -14.28890 -14.11342 -14.04571 -13.87758 -13.61840 -13.45188 -13.12806 -12.93983 -12.64147 -12.56190 -12.12178 -12.08587 -11.86553 -11.80944 -11.60314 -11.34141 -11.22549 -11.06932 -10.87343 -10.73737 -10.41069 -9.89290 -9.27839 -8.99498 -7.93969 -5.22059 -0.81707 -0.20872 1.10749 1.49432 1.52401 1.54544 1.59416 1.60989 1.99281 2.25170 2.50330 2.56904 2.99440 3.03648 3.32542 3.35009 3.44974 3.55380 3.59712 3.65743 3.82376 3.91566 3.99906 4.08605 4.17871 4.24199 4.37372 4.39512 4.44839 4.48428 4.50243 4.58013 4.71117 4.72337 4.77685 4.81019 4.91027 4.96670 5.09816 5.19470 5.47588 5.58634 5.81313 6.19057 6.26868 6.38540 6.77555 7.17724 7.37138 7.51228 8.03709 8.28818 9.28344 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.004595 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.082105 B = 6092.475521 C = 9106.918740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C 0.178 3.822 4 N -0.536 5.536 5 C -0.043 4.043 6 C -0.001 4.001 7 C -0.022 4.022 8 H 0.102 0.898 9 C 0.130 3.870 10 N -0.596 5.596 11 C 0.578 3.422 12 O -0.560 6.560 13 C -0.134 4.134 14 C -0.092 4.092 15 C 0.046 3.954 16 N -0.255 5.255 17 N -0.270 5.270 18 C 0.091 3.909 19 C 0.065 3.935 20 C 0.182 3.818 21 H 0.068 0.932 22 N -0.710 5.710 23 C -0.234 4.234 24 H 0.078 0.922 25 C -0.058 4.058 26 N -0.960 5.960 27 Si 0.955 3.045 28 H -0.268 1.268 29 H -0.293 1.293 30 H -0.304 1.304 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.239 0.761 35 H 0.156 0.844 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.195 0.805 39 H 0.213 0.787 40 H 0.191 0.809 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.379 0.621 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 0.854 11.188 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.139 5.139 3 C -0.104 4.104 4 N -0.255 5.255 5 C -0.191 4.191 6 C -0.117 4.117 7 C -0.043 4.043 8 H 0.120 0.880 9 C 0.007 3.993 10 N -0.328 5.328 11 C 0.367 3.633 12 O -0.439 6.439 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.118 4.118 16 N -0.096 5.096 17 N -0.110 5.110 18 C -0.074 4.074 19 C -0.060 4.060 20 C 0.070 3.930 21 H 0.086 0.914 22 N -0.348 5.348 23 C -0.366 4.366 24 H 0.096 0.904 25 C -0.251 4.251 26 N -0.610 5.610 27 Si 0.786 3.214 28 H -0.192 1.192 29 H -0.220 1.220 30 H -0.232 1.232 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.255 0.745 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.211 0.789 39 H 0.230 0.770 40 H 0.208 0.792 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.212 0.788 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.000 0.030 12.294 12.928 hybrid contribution -0.801 0.921 -1.689 2.084 sum -4.802 0.951 10.604 11.680 Atomic orbital electron populations 1.22360 0.74320 1.06035 1.05050 1.45456 1.08975 1.05831 1.53629 1.25558 0.85049 0.94818 1.04955 1.70181 1.21609 1.12336 1.21391 1.21992 0.96458 0.91220 1.09409 1.20728 0.91004 0.89358 1.10606 1.20762 1.01276 0.87460 0.94812 0.88042 1.21927 1.00320 0.81049 0.95982 1.48243 1.63616 1.13945 1.07009 1.17696 0.77395 0.84321 0.83914 1.90777 1.54139 1.78448 1.20573 1.21059 1.02542 0.95240 0.96029 1.24065 0.92929 0.97378 0.97758 1.24943 0.93594 0.91601 1.01690 1.72797 1.09092 1.31887 0.95855 1.73093 1.12938 1.12475 1.12461 1.24666 0.91150 0.89957 1.01650 1.23872 1.02754 1.01314 0.78072 1.21435 0.96920 0.91030 0.83631 0.91387 1.42257 1.08774 1.84168 0.99632 1.19535 0.91334 1.38717 0.86992 0.90409 1.25289 0.97457 1.03411 0.98960 1.69757 1.16773 1.57954 1.16555 0.85349 0.79542 0.76524 0.79984 1.19244 1.21981 1.23184 0.88418 0.87254 0.89663 0.74466 0.82667 0.91353 0.89541 0.78866 0.76995 0.79207 0.88837 0.88735 0.78795 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 11.00 127.77 1.41 2.28 16 2 N -0.46 -10.65 3.15 -537.89 -1.70 -12.35 16 3 C 0.18 4.44 12.56 180.26 2.26 6.71 16 4 N -0.54 -17.75 11.25 -200.31 -2.25 -20.00 16 5 C -0.04 -1.43 11.02 83.52 0.92 -0.51 16 6 C 0.00 -0.03 5.80 40.95 0.24 0.21 16 7 C -0.02 -0.55 2.89 -10.35 -0.03 -0.58 16 8 H 0.10 2.41 6.98 -2.39 -0.02 2.39 16 9 C 0.13 3.05 6.46 86.73 0.56 3.61 16 10 N -0.60 -14.45 3.33 -814.89 -2.71 -17.16 16 11 C 0.58 15.31 7.80 86.87 0.68 15.99 16 12 O -0.56 -17.80 16.83 -3.77 -0.06 -17.86 16 13 C -0.13 -3.17 5.89 -19.83 -0.12 -3.28 16 14 C -0.09 -1.84 8.46 22.79 0.19 -1.65 16 15 C 0.05 0.91 11.30 84.74 0.96 1.87 16 16 N -0.26 -6.53 11.48 -57.33 -0.66 -7.18 16 17 N -0.27 -7.26 11.49 -56.53 -0.65 -7.91 16 18 C 0.09 2.21 10.90 85.04 0.93 3.14 16 19 C 0.06 1.58 4.62 86.86 0.40 1.98 16 20 C 0.18 5.50 3.06 46.38 0.14 5.64 16 21 H 0.07 2.25 6.55 -2.39 -0.02 2.24 16 22 N -0.71 -28.32 5.24 -316.37 -1.66 -29.98 16 23 C -0.23 -10.96 9.96 84.03 0.84 -10.12 16 24 H 0.08 3.55 7.83 -2.91 -0.02 3.52 16 25 C -0.06 -2.93 5.50 84.86 0.47 -2.46 16 26 N -0.96 -52.07 13.06 21.65 0.28 -51.79 16 27 Si 0.96 42.11 29.55 68.60 2.03 44.13 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 30 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.25 7.13 -2.39 -0.02 1.23 16 34 H 0.24 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.16 5.12 7.16 -2.91 -0.02 5.10 16 36 H 0.07 1.77 7.81 -2.39 -0.02 1.75 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 38 H 0.19 3.46 3.64 -2.91 -0.01 3.45 16 39 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.19 4.08 7.77 -2.91 -0.02 4.06 16 41 H 0.09 2.15 7.35 -2.39 -0.02 2.13 16 42 H 0.09 2.18 6.02 -2.39 -0.01 2.17 16 43 H 0.38 16.39 7.76 -92.71 -0.72 15.67 16 44 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -69.76 368.79 2.81 -66.95 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.35 Total: 30.35 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 9.84 Total: 22.79 kcal Atomic # 7 Polarization: -137.03 SS G_CDS: -9.34 Total: -146.37 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.06 Total: -17.86 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -69.76 2.81 -66.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070693721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.763 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds