Wall clock time and date at job start Wed Apr 1 2020 00:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64421 * 2 1 4 4 C 1.54320 * 110.72128 * 236.65948 * 2 1 3 5 5 N 1.47029 * 107.27257 * 219.44539 * 4 2 1 6 6 C 1.36934 * 125.64722 * 178.92097 * 5 4 2 7 7 H 1.07998 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99669 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00126 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00202 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47059 * 89.99812 * 10 8 6 12 12 H 1.48497 * 109.47790 * 209.99905 * 10 8 6 13 13 H 1.48507 * 109.46842 * 330.00381 * 10 8 6 14 14 C 1.47432 * 108.70166 * 358.94291 * 5 4 2 15 15 C 1.54912 * 104.82911 * 24.12937 * 14 5 4 16 16 H 1.08993 * 111.03930 * 81.08068 * 15 14 5 17 17 N 1.46501 * 110.99877 * 204.91842 * 15 14 5 18 18 C 1.34781 * 119.99565 * 267.19328 * 17 15 14 19 19 O 1.21566 * 120.00424 * 0.02562 * 18 17 15 20 20 C 1.47638 * 119.99675 * 180.02562 * 18 17 15 21 21 C 1.39625 * 120.18864 * 353.84799 * 20 18 17 22 22 C 1.37868 * 119.91224 * 180.29763 * 21 20 18 23 23 C 1.38499 * 120.30297 * 359.72782 * 22 21 20 24 24 C 1.38115 * 120.38091 * 359.97438 * 23 22 21 25 25 C 1.38705 * 120.07588 * 0.02902 * 24 23 22 26 26 N 1.39845 * 120.15031 * 179.97438 * 25 24 23 27 27 C 1.35147 * 127.39829 * 302.49244 * 26 25 24 28 28 N 1.30711 * 107.26364 * 179.97438 * 27 26 25 29 29 N 1.28418 * 110.65929 * 0.02562 * 28 27 26 30 30 N 1.28949 * 110.21815 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47157 * 296.86424 * 1 2 3 32 32 H 1.09006 * 109.46490 * 56.86076 * 1 2 3 33 33 H 1.08996 * 109.47286 * 176.85795 * 1 2 3 34 34 H 1.08992 * 109.88482 * 338.86547 * 4 2 1 35 35 H 1.08999 * 109.88094 * 99.87674 * 4 2 1 36 36 H 0.97001 * 119.99987 * 180.02562 * 9 8 6 37 37 H 1.09002 * 110.36547 * 265.28887 * 14 5 4 38 38 H 1.08994 * 110.36399 * 142.96681 * 14 5 4 39 39 H 0.97002 * 120.00786 * 87.19809 * 17 15 14 40 40 H 1.07998 * 120.04365 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.84611 * 179.70394 * 22 21 20 42 42 H 1.07995 * 119.80761 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.96096 * 179.97438 * 24 23 22 44 44 H 1.08001 * 126.36371 * 359.93924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2446 -1.5521 -0.7362 6 6 4.0037 -2.4004 -1.4972 7 1 3.7604 -2.5563 -2.5378 8 6 5.0859 -3.0601 -0.9311 9 7 5.3820 -2.8706 0.3373 10 14 6.1211 -4.2180 -1.9689 11 1 7.2310 -3.4591 -2.5994 12 1 6.6813 -5.2891 -1.1063 13 1 5.2739 -4.8261 -3.0262 14 6 3.4633 -1.2486 0.6899 15 6 2.0789 -0.7934 1.2152 16 1 1.4447 -1.6507 1.4408 17 7 2.2214 0.0737 2.3874 18 6 2.1871 -0.4566 3.6260 19 8 2.0384 -1.6545 3.7706 20 6 2.3301 0.4173 4.8074 21 6 2.6287 1.7718 4.6467 22 6 2.7671 2.5813 5.7540 23 6 2.6057 2.0587 7.0264 24 6 2.3041 0.7220 7.1994 25 6 2.1614 -0.1068 6.0964 26 7 1.8567 -1.4606 6.2697 27 6 2.5571 -2.3758 6.9755 28 7 1.9208 -3.5132 6.8750 29 7 0.8666 -3.3803 6.1539 30 7 0.7554 -2.1616 5.7473 31 1 -0.3633 0.4643 0.9167 32 1 -0.3632 0.5619 -0.8606 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3131 -1.4785 -1.5750 35 1 2.3716 -0.1060 -1.9985 36 1 6.1385 -3.3313 0.7328 37 1 4.1932 -0.4465 0.7994 38 1 3.7960 -2.1405 1.2208 39 1 2.3403 1.0295 2.2722 40 1 2.7555 2.1837 3.6564 41 1 3.0028 3.6279 5.6286 42 1 2.7155 2.7002 7.8882 43 1 2.1801 0.3215 8.1946 44 1 3.4727 -2.2002 7.5207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080924923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:53 Heat of formation + Delta-G solvation = 135.190592 kcal Electronic energy + Delta-G solvation = -30020.657150 eV Core-core repulsion = 25976.473949 eV Total energy + Delta-G solvation = -4044.183200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.09278 -41.50380 -40.04320 -38.90256 -36.26086 -35.59749 -34.45380 -33.21782 -32.48897 -32.15056 -31.17751 -29.51658 -27.46877 -26.30047 -25.50759 -24.83711 -23.84306 -23.14252 -22.27539 -21.71450 -21.14743 -19.69244 -18.98004 -18.55216 -17.70001 -17.37671 -17.03824 -16.95942 -16.36439 -16.06030 -15.88361 -15.62264 -15.59665 -15.05200 -14.65725 -14.47261 -14.41368 -14.23631 -13.99110 -13.73722 -13.49232 -13.42745 -13.10161 -13.02289 -12.89422 -12.67211 -12.64262 -12.26061 -12.12346 -12.08994 -11.97769 -11.89714 -11.71270 -11.50324 -11.44700 -10.95127 -10.82028 -10.26889 -10.04601 -9.94696 -8.96102 -7.83123 -5.29673 -0.60971 -0.06754 0.30652 0.96036 1.31841 1.40239 1.43875 1.52418 1.78478 1.99692 2.44902 2.58929 3.27022 3.27834 3.44021 3.54806 3.61895 3.74598 3.78401 3.94160 3.96512 4.03143 4.08091 4.21559 4.30769 4.36762 4.42630 4.50530 4.54924 4.59651 4.73061 4.83508 4.96370 5.01634 5.04929 5.13404 5.18373 5.21043 5.30986 5.38879 5.44295 5.45069 5.56005 5.72848 5.78508 6.21444 6.47797 7.01106 7.18036 7.42506 7.70906 8.33145 9.17502 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.003543 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.302262 B = 7900.359414 C = 8820.307845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.105 0.895 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.241 4.241 7 H 0.087 0.913 8 C -0.070 4.070 9 N -0.950 5.950 10 Si 0.982 3.018 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.161 3.839 15 C 0.139 3.861 16 H 0.057 0.943 17 N -0.691 5.691 18 C 0.539 3.461 19 O -0.571 6.571 20 C -0.133 4.133 21 C -0.073 4.073 22 C -0.091 4.091 23 C -0.063 4.063 24 C -0.100 4.100 25 C 0.135 3.865 26 N -0.322 5.322 27 C 0.238 3.762 28 N -0.367 5.367 29 N -0.083 5.083 30 N -0.062 5.062 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.039 0.961 36 H 0.244 0.756 37 H -0.004 1.004 38 H 0.055 0.945 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.164 0.836 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 21.070 16.309 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.123 0.877 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.370 4.370 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.810 3.190 11 H -0.206 1.206 12 H -0.225 1.225 13 H -0.192 1.192 14 C 0.034 3.966 15 C 0.033 3.967 16 H 0.075 0.925 17 N -0.342 5.342 18 C 0.327 3.673 19 O -0.450 6.450 20 C -0.138 4.138 21 C -0.092 4.092 22 C -0.109 4.109 23 C -0.082 4.082 24 C -0.121 4.121 25 C 0.043 3.957 26 N -0.114 5.114 27 C -0.059 4.059 28 N -0.216 5.216 29 N -0.078 5.078 30 N -0.047 5.047 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.252 0.748 40 H 0.174 0.826 41 H 0.198 0.802 42 H 0.204 0.796 43 H 0.182 0.818 44 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -6.641 19.178 15.920 25.794 hybrid contribution 1.502 -0.463 -0.787 1.757 sum -5.139 18.715 15.133 24.610 Atomic orbital electron populations 1.21692 0.92241 1.01687 1.03080 1.22384 0.97270 0.99244 0.92183 0.87707 1.21600 0.88519 0.93338 0.95745 1.44689 1.32076 1.50884 1.07665 1.19513 1.06460 1.17379 0.93634 0.89548 1.25725 1.00451 1.02493 0.97550 1.70127 1.30088 1.47156 1.12602 0.85021 0.78641 0.77951 0.77409 1.20575 1.22494 1.19160 1.21821 0.91793 0.98095 0.84873 1.22130 0.97284 0.92761 0.84571 0.92476 1.45493 1.72943 1.11469 1.04330 1.18782 0.76485 0.87719 0.84319 1.90861 1.50086 1.17432 1.86670 1.19979 1.06820 0.96081 0.90905 1.21640 0.95601 0.89516 1.02434 1.21834 0.95917 1.02125 0.91033 1.21817 0.93627 0.93158 0.99560 1.21460 0.99508 0.94039 0.97065 1.17834 1.04111 0.79084 0.94652 1.48691 1.18071 1.09677 1.34989 1.28277 0.99949 0.83350 0.94315 1.74213 1.04479 1.23808 1.19095 1.77944 1.12663 1.10081 1.07130 1.82546 1.06281 1.00008 1.15910 0.91448 0.89885 0.94205 0.95575 0.94347 0.94688 0.98581 0.92698 0.74780 0.82614 0.80160 0.79643 0.81838 0.69890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.16 71.98 0.66 -2.71 16 2 C -0.09 -2.95 3.20 -9.60 -0.03 -2.98 16 3 H 0.10 2.76 8.00 -2.39 -0.02 2.74 16 4 C 0.13 5.49 6.84 86.73 0.59 6.08 16 5 N -0.63 -33.76 3.39 -691.98 -2.35 -36.11 16 6 C -0.24 -14.12 10.27 84.03 0.86 -13.26 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 9 N -0.95 -60.70 10.09 21.65 0.22 -60.48 16 10 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.16 8.47 5.58 86.85 0.48 8.95 16 15 C 0.14 5.66 2.87 46.39 0.13 5.79 16 16 H 0.06 2.77 7.44 -2.39 -0.02 2.76 16 17 N -0.69 -22.01 5.15 -439.02 -2.26 -24.27 16 18 C 0.54 19.09 7.72 86.72 0.67 19.76 16 19 O -0.57 -26.86 12.88 -3.92 -0.05 -26.91 16 20 C -0.13 -3.18 5.89 -19.99 -0.12 -3.30 16 21 C -0.07 -0.96 9.52 22.52 0.21 -0.74 16 22 C -0.09 -0.48 10.02 22.24 0.22 -0.26 16 23 C -0.06 -0.26 10.03 22.30 0.22 -0.04 16 24 C -0.10 -1.06 9.82 22.35 0.22 -0.84 16 25 C 0.13 2.97 6.23 38.44 0.24 3.21 16 26 N -0.32 -9.53 2.59 -190.39 -0.49 -10.02 16 27 C 0.24 6.20 12.68 180.17 2.28 8.48 16 28 N -0.37 -13.02 12.15 -60.10 -0.73 -13.75 16 29 N -0.08 -3.42 13.39 37.02 0.50 -2.92 16 30 N -0.06 -2.42 11.48 37.02 0.42 -1.99 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 33 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 34 H 0.03 1.09 7.76 -2.39 -0.02 1.07 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.05 3.53 5.87 -2.39 -0.01 3.52 16 39 H 0.41 9.24 6.64 -92.71 -0.62 8.62 16 40 H 0.16 1.43 6.45 -2.91 -0.02 1.41 16 41 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 42 H 0.19 -0.73 8.06 -2.91 -0.02 -0.75 16 43 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 44 H 0.29 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -96.82 368.48 4.84 -91.97 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.43 Total: 10.06 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 7.13 Total: 24.45 kcal Atomic # 7 Polarization: -144.85 SS G_CDS: -4.69 Total: -149.54 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -96.82 4.84 -91.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080924923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.165 kcal (2) G-P(sol) polarization free energy of solvation -96.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds