Wall clock time and date at job start Wed Apr 1 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99987 * 2 1 4 4 C 1.52999 * 109.47091 * 276.25376 * 3 2 1 5 5 H 1.08997 * 112.96550 * 66.00879 * 4 3 2 6 6 C 1.53945 * 113.76836 * 294.32618 * 4 3 2 7 7 C 1.53939 * 86.29391 * 222.09244 * 6 4 3 8 8 N 1.47589 * 86.23873 * 23.55075 * 7 6 4 9 9 C 1.36939 * 134.48892 * 155.42475 * 8 7 6 10 10 H 1.08004 * 119.99398 * 185.73291 * 9 8 7 11 11 C 1.38812 * 120.00186 * 5.72932 * 9 8 7 12 12 N 1.31619 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99678 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46836 * 120.00243 * 13 11 9 16 16 H 1.48495 * 109.47244 * 240.00086 * 13 11 9 17 17 C 1.34772 * 119.99818 * 179.97438 * 2 1 3 18 18 O 1.21576 * 120.00072 * 185.79498 * 17 2 1 19 19 C 1.47683 * 119.99987 * 5.79651 * 17 2 1 20 20 C 1.40212 * 120.49493 * 31.17238 * 19 17 2 21 21 C 1.38049 * 118.35306 * 179.97438 * 20 19 17 22 22 C 1.39138 * 119.25490 * 359.97438 * 21 20 19 23 23 N 1.39540 * 119.53301 * 180.02562 * 22 21 20 24 24 C 1.34873 * 126.85858 * 180.02562 * 23 22 21 25 25 N 1.30786 * 108.01607 * 179.97438 * 24 23 22 26 26 C 1.33329 * 109.84730 * 0.02562 * 25 24 23 27 27 N 1.30699 * 109.02552 * 359.70895 * 26 25 24 28 28 N 1.32435 * 120.94387 * 0.02562 * 22 21 20 29 29 C 1.31633 * 121.80296 * 359.72076 * 28 22 21 30 30 H 1.08997 * 109.47122 * 88.50367 * 1 2 3 31 31 H 1.08993 * 109.47641 * 208.50713 * 1 2 3 32 32 H 1.08999 * 109.47141 * 328.51064 * 1 2 3 33 33 H 1.08996 * 109.46946 * 156.25205 * 3 2 1 34 34 H 1.09000 * 109.47126 * 36.25237 * 3 2 1 35 35 H 1.09006 * 113.74002 * 107.74471 * 6 4 3 36 36 H 1.08999 * 113.74322 * 336.44112 * 6 4 3 37 37 H 1.09001 * 113.77307 * 137.90442 * 7 6 4 38 38 H 1.09002 * 113.77190 * 269.19813 * 7 6 4 39 39 H 0.97004 * 119.99312 * 179.97438 * 12 11 9 40 40 H 1.08001 * 120.82780 * 359.95638 * 20 19 17 41 41 H 1.07997 * 120.36990 * 179.97438 * 21 20 19 42 42 H 1.08008 * 125.99289 * 359.97438 * 24 23 22 43 43 H 1.07996 * 125.48820 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.68235 * 180.29118 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3164 1.7889 -1.4339 5 1 1.3550 2.0635 -1.8678 6 6 3.1780 0.8985 -2.3475 7 6 3.7751 2.2082 -2.8932 8 7 3.3652 2.8152 -1.6119 9 6 3.7878 3.8943 -0.8825 10 1 3.3708 4.0814 0.0961 11 6 4.7523 4.7477 -1.4007 12 7 5.2601 4.5199 -2.5934 13 14 5.3282 6.2201 -0.4059 14 1 4.6073 6.2532 0.8919 15 1 6.7882 6.1094 -0.1580 16 1 5.0475 7.4678 -1.1606 17 6 2.1388 -1.1672 0.0005 18 8 3.3499 -1.1699 0.1068 19 6 1.4060 -2.4429 -0.1281 20 6 0.2148 -2.5081 -0.8647 21 6 -0.4337 -3.7233 -0.9564 22 6 0.1115 -4.8346 -0.3210 23 7 -0.5388 -6.0660 -0.4104 24 6 -0.1452 -7.2309 0.1438 25 7 -1.0240 -8.1465 -0.1723 26 6 -1.9868 -7.6100 -0.9225 27 7 -1.7371 -6.3381 -1.0906 28 7 1.2389 -4.7405 0.3676 29 6 1.8921 -3.6029 0.4767 30 1 -0.3633 0.0268 -1.0273 31 1 -0.3634 -0.9030 0.4904 32 1 -0.3633 0.8763 0.5368 33 1 3.1937 1.1130 0.4138 34 1 1.6615 1.9977 0.6077 35 1 2.6020 0.3384 -3.0842 36 1 3.8955 0.2804 -1.8080 37 1 4.8551 2.1725 -3.0367 38 1 3.2441 2.6066 -3.7578 39 1 5.9338 5.1164 -2.9557 40 1 -0.1858 -1.6293 -1.3480 41 1 -1.3538 -3.8104 -1.5152 42 1 0.7404 -7.3813 0.7434 43 1 -2.8387 -8.1399 -1.3223 44 1 2.8111 -3.5661 1.0429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085753355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:45 Heat of formation + Delta-G solvation = 183.883843 kcal Electronic energy + Delta-G solvation = -28778.882294 eV Core-core repulsion = 24736.810592 eV Total energy + Delta-G solvation = -4042.071703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83585 -41.09270 -39.47833 -37.70527 -35.61041 -34.72157 -33.26356 -32.15480 -31.77143 -30.75828 -28.58559 -27.83480 -26.92730 -25.20579 -24.59713 -23.31503 -22.83091 -22.23487 -21.90217 -19.91601 -19.19607 -19.01486 -17.55213 -17.01526 -16.57914 -16.54066 -16.26365 -15.95760 -15.48956 -14.97713 -14.85358 -14.65350 -14.49639 -14.34503 -13.99696 -13.92106 -13.50387 -13.12506 -12.91351 -12.74018 -12.60226 -12.34478 -12.02448 -11.45973 -11.37014 -11.08629 -10.94221 -10.72284 -10.69490 -10.49037 -10.42770 -10.40417 -10.39198 -9.93303 -9.87018 -9.70691 -9.49650 -9.12618 -8.80542 -8.48497 -6.86685 -5.76386 -3.08461 -0.16691 0.63041 1.26320 1.41860 2.38578 2.64590 2.89806 3.32330 3.38822 3.43585 3.46537 3.62613 3.82475 3.94050 4.16192 4.31605 4.44038 4.46766 4.55827 4.72803 4.89662 5.13761 5.15423 5.20381 5.30091 5.39379 5.43930 5.49231 5.52989 5.64396 5.76085 5.81866 5.86829 5.88188 6.04666 6.31402 6.35376 6.45511 6.59256 6.70983 6.74995 7.03140 7.26557 7.32893 7.48886 7.51906 7.60498 7.98725 8.10561 9.04813 9.71498 10.61620 11.41266 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.002030 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.606385 B =13791.471418 C =13866.575866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.600 5.600 3 C 0.114 3.886 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.561 3.439 18 O -0.517 6.517 19 C -0.181 4.181 20 C -0.028 4.028 21 C -0.163 4.163 22 C 0.374 3.626 23 N -0.335 5.335 24 C 0.295 3.705 25 N -0.540 5.540 26 C 0.215 3.785 27 N -0.309 5.309 28 N -0.505 5.505 29 C 0.191 3.809 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.229 0.771 43 H 0.227 0.773 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 -20.747 4.675 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.333 5.333 3 C -0.009 4.009 4 C 0.020 3.980 5 H 0.060 0.940 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.348 3.652 18 O -0.393 6.393 19 C -0.187 4.187 20 C -0.054 4.054 21 C -0.185 4.185 22 C 0.146 3.854 23 N -0.120 5.120 24 C -0.001 4.001 25 N -0.266 5.266 26 C -0.087 4.087 27 N -0.134 5.134 28 N -0.217 5.217 29 C 0.031 3.969 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.246 0.754 43 H 0.243 0.757 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.106 -21.030 4.884 26.350 hybrid contribution -0.069 1.733 0.019 1.734 sum -15.175 -19.298 4.903 25.034 Atomic orbital electron populations 1.22161 0.80179 1.03270 1.01684 1.47676 1.06683 1.06407 1.72539 1.21942 0.98063 0.81818 0.99044 1.22553 0.93148 0.89651 0.92695 0.94034 1.23814 0.99543 0.97765 0.98721 1.22095 0.99482 0.86164 0.88265 1.46015 1.34832 1.30312 1.21466 1.19017 1.17884 1.00566 0.97609 0.90304 1.24811 0.99929 0.98962 0.96707 1.69850 1.31239 1.38837 1.16623 0.86084 0.78382 0.82551 0.78954 1.20464 1.21705 1.21801 1.17847 0.87030 0.82876 0.77490 1.90854 1.13124 1.86699 1.48649 1.21139 0.97569 0.96590 1.03383 1.22240 0.91709 0.98199 0.93260 1.21608 1.03174 0.91149 1.02568 1.17873 0.90047 0.83070 0.94386 1.47500 1.18232 1.07412 1.38879 1.26511 0.98914 0.80312 0.94361 1.70755 1.04960 1.31932 1.18946 1.26327 0.98630 0.88805 0.94971 1.78187 0.97939 1.18170 1.19089 1.66929 1.06872 1.29229 1.18680 1.22729 0.96792 0.84250 0.93093 0.92059 0.91082 0.90487 0.88429 0.91100 0.93884 0.89889 0.91588 0.95579 0.93699 0.82046 0.82741 0.75439 0.75652 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.83 59.85 0.53 1.11 16 2 N -0.60 -7.70 2.79 -182.76 -0.51 -8.21 16 3 C 0.11 1.91 5.50 -4.04 -0.02 1.88 16 4 C 0.13 2.49 4.58 -66.74 -0.31 2.18 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.15 7.36 -25.80 -0.19 -3.34 16 7 C 0.17 3.98 7.37 -2.97 -0.02 3.96 16 8 N -0.60 -15.15 3.58 -169.74 -0.61 -15.76 16 9 C -0.22 -6.14 10.52 -15.06 -0.16 -6.30 16 10 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.48 11.54 55.49 0.64 -26.84 16 13 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.56 7.67 7.01 -12.41 -0.09 7.58 16 18 O -0.52 -9.12 15.15 5.30 0.08 -9.04 16 19 C -0.18 -1.88 5.29 -104.81 -0.55 -2.44 16 20 C -0.03 -0.23 7.73 -38.91 -0.30 -0.53 16 21 C -0.16 -1.36 9.70 -39.32 -0.38 -1.74 16 22 C 0.37 3.62 7.56 -154.46 -1.17 2.45 16 23 N -0.33 -3.23 3.80 -13.33 -0.05 -3.28 16 24 C 0.29 2.50 12.25 -90.29 -1.11 1.40 16 25 N -0.54 -4.94 11.19 -15.72 -0.18 -5.12 16 26 C 0.22 1.68 13.03 -91.75 -1.20 0.48 16 27 N -0.31 -2.91 11.99 29.30 0.35 -2.56 16 28 N -0.50 -4.94 9.86 -11.98 -0.12 -5.05 16 29 C 0.19 1.89 10.76 -17.15 -0.18 1.70 16 30 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 31 H 0.07 0.47 5.85 -51.93 -0.30 0.17 16 32 H 0.08 0.59 7.97 -51.93 -0.41 0.18 16 33 H 0.10 1.94 7.18 -51.93 -0.37 1.56 16 34 H 0.07 1.11 7.99 -51.93 -0.42 0.69 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.75 7.00 -51.93 -0.36 1.39 16 37 H 0.07 1.76 7.43 -51.93 -0.39 1.38 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.16 1.04 5.11 -52.49 -0.27 0.77 16 41 H 0.15 1.13 7.71 -52.49 -0.40 0.73 16 42 H 0.23 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.23 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.18 1.62 7.94 -52.48 -0.42 1.21 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -35.29 371.43 -10.42 -45.71 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.36 Total: -0.63 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -5.24 Total: 8.10 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.47 Total: -66.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.29 -10.42 -45.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085753355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.594 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds