Wall clock time and date at job start Wed Apr 1 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99987 * 2 1 4 4 C 1.52999 * 109.47091 * 276.25376 * 3 2 1 5 5 H 1.08997 * 112.96550 * 66.00879 * 4 3 2 6 6 C 1.53945 * 113.76836 * 294.32618 * 4 3 2 7 7 C 1.53939 * 86.29391 * 222.09244 * 6 4 3 8 8 N 1.47589 * 86.23873 * 23.55075 * 7 6 4 9 9 C 1.36939 * 134.48892 * 155.42475 * 8 7 6 10 10 H 1.08004 * 119.99398 * 185.73291 * 9 8 7 11 11 C 1.38812 * 120.00186 * 5.72932 * 9 8 7 12 12 N 1.31619 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99678 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46836 * 120.00243 * 13 11 9 16 16 H 1.48495 * 109.47244 * 240.00086 * 13 11 9 17 17 C 1.34772 * 119.99818 * 179.97438 * 2 1 3 18 18 O 1.21576 * 120.00072 * 185.79498 * 17 2 1 19 19 C 1.47683 * 119.99987 * 5.79651 * 17 2 1 20 20 C 1.40212 * 120.49493 * 31.17238 * 19 17 2 21 21 C 1.38049 * 118.35306 * 179.97438 * 20 19 17 22 22 C 1.39138 * 119.25490 * 359.97438 * 21 20 19 23 23 N 1.39540 * 119.53301 * 180.02562 * 22 21 20 24 24 C 1.34873 * 126.85858 * 180.02562 * 23 22 21 25 25 N 1.30786 * 108.01607 * 179.97438 * 24 23 22 26 26 C 1.33329 * 109.84730 * 0.02562 * 25 24 23 27 27 N 1.30699 * 109.02552 * 359.70895 * 26 25 24 28 28 N 1.32435 * 120.94387 * 0.02562 * 22 21 20 29 29 C 1.31633 * 121.80296 * 359.72076 * 28 22 21 30 30 H 1.08997 * 109.47122 * 88.50367 * 1 2 3 31 31 H 1.08993 * 109.47641 * 208.50713 * 1 2 3 32 32 H 1.08999 * 109.47141 * 328.51064 * 1 2 3 33 33 H 1.08996 * 109.46946 * 156.25205 * 3 2 1 34 34 H 1.09000 * 109.47126 * 36.25237 * 3 2 1 35 35 H 1.09006 * 113.74002 * 107.74471 * 6 4 3 36 36 H 1.08999 * 113.74322 * 336.44112 * 6 4 3 37 37 H 1.09001 * 113.77307 * 137.90442 * 7 6 4 38 38 H 1.09002 * 113.77190 * 269.19813 * 7 6 4 39 39 H 0.97004 * 119.99312 * 179.97438 * 12 11 9 40 40 H 1.08001 * 120.82780 * 359.95638 * 20 19 17 41 41 H 1.07997 * 120.36990 * 179.97438 * 21 20 19 42 42 H 1.08008 * 125.99289 * 359.97438 * 24 23 22 43 43 H 1.07996 * 125.48820 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.68235 * 180.29118 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3164 1.7889 -1.4339 5 1 1.3550 2.0635 -1.8678 6 6 3.1780 0.8985 -2.3475 7 6 3.7751 2.2082 -2.8932 8 7 3.3652 2.8152 -1.6119 9 6 3.7878 3.8943 -0.8825 10 1 3.3708 4.0814 0.0961 11 6 4.7523 4.7477 -1.4007 12 7 5.2601 4.5199 -2.5934 13 14 5.3282 6.2201 -0.4059 14 1 4.6073 6.2532 0.8919 15 1 6.7882 6.1094 -0.1580 16 1 5.0475 7.4678 -1.1606 17 6 2.1388 -1.1672 0.0005 18 8 3.3499 -1.1699 0.1068 19 6 1.4060 -2.4429 -0.1281 20 6 0.2148 -2.5081 -0.8647 21 6 -0.4337 -3.7233 -0.9564 22 6 0.1115 -4.8346 -0.3210 23 7 -0.5388 -6.0660 -0.4104 24 6 -0.1452 -7.2309 0.1438 25 7 -1.0240 -8.1465 -0.1723 26 6 -1.9868 -7.6100 -0.9225 27 7 -1.7371 -6.3381 -1.0906 28 7 1.2389 -4.7405 0.3676 29 6 1.8921 -3.6029 0.4767 30 1 -0.3633 0.0268 -1.0273 31 1 -0.3634 -0.9030 0.4904 32 1 -0.3633 0.8763 0.5368 33 1 3.1937 1.1130 0.4138 34 1 1.6615 1.9977 0.6077 35 1 2.6020 0.3384 -3.0842 36 1 3.8955 0.2804 -1.8080 37 1 4.8551 2.1725 -3.0367 38 1 3.2441 2.6066 -3.7578 39 1 5.9338 5.1164 -2.9557 40 1 -0.1858 -1.6293 -1.3480 41 1 -1.3538 -3.8104 -1.5152 42 1 0.7404 -7.3813 0.7434 43 1 -2.8387 -8.1399 -1.3223 44 1 2.8111 -3.5661 1.0429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085753355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:44 Heat of formation + Delta-G solvation = 163.496478 kcal Electronic energy + Delta-G solvation = -28779.766357 eV Core-core repulsion = 24736.810592 eV Total energy + Delta-G solvation = -4042.955765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46782 -41.92922 -40.54771 -39.31185 -36.70434 -35.44955 -34.28734 -33.91640 -32.40786 -31.56914 -29.86094 -29.74731 -27.79597 -26.04888 -25.35606 -25.27233 -24.06966 -23.04304 -22.60802 -21.07949 -20.67990 -19.84506 -18.75070 -18.31293 -17.72483 -17.41010 -17.15338 -16.96943 -16.59229 -16.37601 -15.80001 -15.65940 -15.60314 -15.28671 -15.16782 -14.85387 -14.70021 -14.23316 -14.02945 -13.80188 -13.64869 -13.38753 -13.37715 -12.99157 -12.90732 -12.58622 -12.51805 -12.24818 -12.07908 -11.82637 -11.57342 -11.34723 -11.31186 -11.24083 -11.11966 -11.04873 -10.85668 -10.76672 -9.89375 -9.64667 -8.87676 -7.88958 -5.21359 -0.88731 -0.03983 0.58714 0.77450 1.45027 1.46673 1.56287 1.67636 1.81449 1.86178 2.49296 2.55343 2.96710 3.24464 3.26581 3.35421 3.38508 3.48470 3.63182 3.78714 3.89920 3.96397 4.09708 4.22867 4.27951 4.33295 4.49105 4.52208 4.59257 4.67868 4.76266 4.79696 4.85836 4.91973 4.99254 5.02033 5.11826 5.12765 5.23858 5.29595 5.47541 5.55219 5.70177 5.74252 5.95248 6.28388 6.39334 6.88803 6.93101 7.07065 7.63448 8.59672 9.29460 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.002030 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.606385 B =13791.471418 C =13866.575866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.597 5.597 3 C 0.128 3.872 4 C 0.137 3.863 5 H 0.067 0.933 6 C -0.134 4.134 7 C 0.158 3.842 8 N -0.630 5.630 9 C -0.222 4.222 10 H 0.089 0.911 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.976 3.024 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.293 1.293 17 C 0.561 3.439 18 O -0.567 6.567 19 C -0.190 4.190 20 C -0.010 4.010 21 C -0.158 4.158 22 C 0.367 3.633 23 N -0.346 5.346 24 C 0.293 3.707 25 N -0.559 5.559 26 C 0.219 3.781 27 N -0.329 5.329 28 N -0.510 5.510 29 C 0.189 3.811 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.021 0.979 39 H 0.246 0.754 40 H 0.186 0.814 41 H 0.169 0.831 42 H 0.248 0.752 43 H 0.262 0.738 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 -21.773 5.271 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.328 5.328 3 C 0.004 3.996 4 C 0.030 3.970 5 H 0.084 0.916 6 C -0.172 4.172 7 C 0.033 3.967 8 N -0.357 5.357 9 C -0.351 4.351 10 H 0.107 0.893 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.805 3.195 14 H -0.184 1.184 15 H -0.225 1.225 16 H -0.220 1.220 17 C 0.349 3.651 18 O -0.447 6.447 19 C -0.196 4.196 20 C -0.036 4.036 21 C -0.180 4.180 22 C 0.139 3.861 23 N -0.131 5.131 24 C -0.003 4.003 25 N -0.285 5.285 26 C -0.083 4.083 27 N -0.154 5.154 28 N -0.223 5.223 29 C 0.029 3.971 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.203 0.797 41 H 0.187 0.813 42 H 0.264 0.736 43 H 0.277 0.723 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.319 -22.093 5.505 29.223 hybrid contribution 0.808 1.886 -0.163 2.058 sum -17.511 -20.207 5.341 27.267 Atomic orbital electron populations 1.22525 0.76892 1.04964 1.03713 1.47657 1.08504 1.04684 1.71980 1.21469 0.97218 0.83914 0.96993 1.22725 0.92628 0.87200 0.94433 0.91581 1.23517 0.99037 0.95859 0.98819 1.22030 0.97371 0.89001 0.88339 1.46373 1.36963 1.30679 1.21704 1.19450 1.17044 1.00502 0.98094 0.89308 1.25670 1.00905 1.02139 0.97999 1.70043 1.32250 1.39929 1.18507 0.85037 0.77326 0.78929 0.78243 1.18441 1.22499 1.22037 1.18285 0.86558 0.83911 0.76304 1.90837 1.15468 1.87453 1.50928 1.20837 0.98573 0.94917 1.05241 1.22413 0.90327 0.98932 0.91946 1.21754 1.03485 0.90606 1.02179 1.18146 0.90016 0.83633 0.94263 1.47594 1.18560 1.07576 1.39354 1.26980 0.99272 0.80030 0.93984 1.70801 1.05619 1.32395 1.19675 1.27084 0.98935 0.88464 0.93846 1.78156 0.98209 1.19070 1.19929 1.66940 1.07210 1.29008 1.19161 1.22771 0.96875 0.84313 0.93092 0.89684 0.89085 0.89342 0.92170 0.89591 0.90429 0.91615 0.95493 0.96073 0.94508 0.79682 0.81344 0.73621 0.72270 0.80054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 8.83 127.77 1.13 1.88 16 2 N -0.60 -13.91 2.79 -850.41 -2.37 -16.29 16 3 C 0.13 4.11 5.50 86.38 0.47 4.59 16 4 C 0.14 5.10 4.58 45.05 0.21 5.31 16 5 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.13 -5.18 7.36 31.25 0.23 -4.95 16 7 C 0.16 7.80 7.37 86.48 0.64 8.44 16 8 N -0.63 -32.02 3.58 -690.94 -2.48 -34.50 16 9 C -0.22 -12.32 10.52 84.03 0.88 -11.44 16 10 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 11 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 12 N -0.96 -59.35 11.54 21.65 0.25 -59.10 16 13 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 C 0.56 14.67 7.01 86.74 0.61 15.28 16 18 O -0.57 -20.35 15.15 -3.96 -0.06 -20.41 16 19 C -0.19 -3.58 5.29 -19.99 -0.11 -3.69 16 20 C -0.01 -0.14 7.73 22.70 0.18 0.04 16 21 C -0.16 -2.17 9.70 22.44 0.22 -1.95 16 22 C 0.37 6.38 7.56 132.87 1.00 7.38 16 23 N -0.35 -6.03 3.80 -196.07 -0.75 -6.77 16 24 C 0.29 4.54 12.25 180.23 2.21 6.74 16 25 N -0.56 -9.27 11.19 -203.64 -2.28 -11.55 16 26 C 0.22 2.92 13.03 180.74 2.35 5.28 16 27 N -0.33 -5.51 11.99 -61.20 -0.73 -6.24 16 28 N -0.51 -9.29 9.86 -191.82 -1.89 -11.18 16 29 C 0.19 3.55 10.76 85.04 0.92 4.47 16 30 H 0.08 0.71 6.80 -2.39 -0.02 0.70 16 31 H 0.09 0.81 5.85 -2.39 -0.01 0.80 16 32 H 0.09 0.97 7.97 -2.39 -0.02 0.95 16 33 H 0.06 2.42 7.18 -2.39 -0.02 2.40 16 34 H 0.09 2.49 7.99 -2.39 -0.02 2.47 16 35 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.07 2.81 7.00 -2.39 -0.02 2.79 16 37 H 0.03 1.51 7.43 -2.39 -0.02 1.49 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.19 1.48 5.11 -2.91 -0.01 1.46 16 41 H 0.17 1.88 7.71 -2.91 -0.02 1.85 16 42 H 0.25 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.26 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.18 3.28 7.94 -2.91 -0.02 3.26 16 Total: -1.00 -79.79 371.43 4.16 -75.62 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.04 Total: 8.66 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 11.40 Total: 33.52 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -10.25 Total: -145.63 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -79.79 4.16 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085753355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.120 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds