Wall clock time and date at job start Wed Apr 1 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28723 * 125.31702 * 2 1 4 4 N 1.28984 * 108.98786 * 179.97438 * 3 2 1 5 5 C 1.34186 * 107.25332 * 359.97438 * 4 3 2 6 6 C 1.48009 * 126.70158 * 179.97438 * 5 4 3 7 7 O 1.21534 * 119.99961 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99639 * 0.02597 * 6 5 4 9 9 C 1.46497 * 119.99893 * 179.97438 * 8 6 5 10 10 H 1.09010 * 110.63997 * 36.68927 * 9 8 6 11 11 C 1.54315 * 110.71985 * 273.55028 * 9 8 6 12 12 N 1.47023 * 107.27233 * 219.44363 * 11 9 8 13 13 C 1.36939 * 125.65346 * 178.90989 * 12 11 9 14 14 H 1.07994 * 119.99942 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99694 * 0.02562 * 13 12 11 16 16 N 1.31615 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00045 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47396 * 59.99460 * 17 15 13 19 19 H 1.48497 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46734 * 299.99800 * 17 15 13 21 21 C 1.47423 * 108.70002 * 358.93789 * 12 11 9 22 22 C 1.54906 * 104.83376 * 24.12852 * 21 12 11 23 23 H 1.09002 * 111.00282 * 81.06112 * 22 21 12 24 24 C 1.50699 * 111.00814 * 204.91442 * 22 21 12 25 25 C 1.38231 * 120.00135 * 51.92455 * 24 22 21 26 26 C 1.38232 * 120.00228 * 179.81567 * 25 24 22 27 27 C 1.38230 * 119.99794 * 0.38806 * 26 25 24 28 28 C 1.38234 * 120.00260 * 359.86594 * 27 26 25 29 29 C 1.38236 * 119.99965 * 359.94865 * 28 27 26 30 30 N 1.28872 * 125.32531 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47359 * 90.02388 * 1 2 3 32 32 H 1.09000 * 109.46766 * 210.02177 * 1 2 3 33 33 H 1.08999 * 109.47627 * 330.02417 * 1 2 3 34 34 H 0.96997 * 119.99719 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.88562 * 338.85592 * 11 9 8 36 36 H 1.09000 * 109.88738 * 99.87288 * 11 9 8 37 37 H 0.96999 * 120.00030 * 180.02562 * 16 15 13 38 38 H 1.09005 * 110.36578 * 142.97176 * 21 12 11 39 39 H 1.09004 * 110.36802 * 265.17790 * 21 12 11 40 40 H 1.08009 * 119.99854 * 359.97438 * 25 24 22 41 41 H 1.08006 * 120.00134 * 180.23356 * 26 25 24 42 42 H 1.08008 * 119.99606 * 179.83675 * 27 26 25 43 43 H 1.07999 * 120.00329 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.00130 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6877 0.0005 5 6 3.4685 -0.6540 0.0015 6 6 4.6693 -1.5193 0.0018 7 8 4.5470 -2.7285 0.0022 8 7 5.8985 -0.9662 0.0017 9 6 7.0870 -1.8227 0.0026 10 1 6.9207 -2.7114 -0.6063 11 6 7.4774 -2.2133 1.4436 12 7 8.9449 -2.1753 1.5238 13 6 9.6902 -2.4382 2.6421 14 1 10.7679 -2.3829 2.5981 15 6 9.0605 -2.7757 3.8323 16 7 7.7472 -2.8425 3.8860 17 14 10.0771 -3.1336 5.3580 18 1 10.8852 -1.9374 5.7063 19 1 9.1732 -3.4660 6.4883 20 1 10.9811 -4.2815 5.0924 21 6 9.4812 -1.8067 0.2010 22 6 8.3298 -1.0375 -0.4934 23 1 8.2956 -0.0004 -0.1594 24 6 8.4551 -1.1158 -1.9931 25 6 8.6016 -2.3435 -2.6113 26 6 8.7127 -2.4157 -3.9873 27 6 8.6854 -1.2595 -4.7444 28 6 8.5442 -0.0314 -4.1259 29 6 8.4293 0.0405 -2.7502 30 7 2.2101 -1.0514 0.0005 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 5.9960 -0.0012 0.0018 35 1 7.0491 -1.5018 2.1495 36 1 7.1176 -3.2179 1.6658 37 1 7.3071 -3.0780 4.7177 38 1 10.3546 -1.1638 0.3114 39 1 9.7388 -2.7009 -0.3666 40 1 8.6267 -3.2466 -2.0194 41 1 8.8234 -3.3752 -4.4705 42 1 8.7749 -1.3158 -5.8193 43 1 8.5233 0.8720 -4.7174 44 1 8.3194 1.0001 -2.2669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086604763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:19 Heat of formation + Delta-G solvation = 159.930186 kcal Electronic energy + Delta-G solvation = -29487.120148 eV Core-core repulsion = 25444.009737 eV Total energy + Delta-G solvation = -4043.110411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.48822 -39.89858 -38.92733 -37.12105 -35.37586 -33.98807 -33.24175 -32.72846 -30.95968 -30.69874 -29.35383 -28.13573 -27.06785 -25.32080 -24.35555 -23.13772 -22.64506 -21.96948 -21.11940 -19.92301 -19.84991 -18.33702 -17.72489 -17.14866 -16.73518 -16.66375 -15.87979 -15.18465 -14.76947 -14.76127 -14.53557 -14.21543 -14.11812 -13.80723 -13.62506 -13.54508 -13.21242 -12.93938 -12.74119 -12.42229 -12.28463 -12.09935 -12.08583 -11.30554 -11.23744 -11.20508 -11.14781 -11.05119 -10.89734 -10.73732 -10.49240 -10.40942 -10.18880 -10.02658 -9.93458 -9.75068 -8.80129 -8.74633 -8.61124 -8.33907 -6.85249 -5.69259 -3.04956 0.91174 1.44564 1.52106 1.57007 1.62036 2.96179 3.29840 3.42647 3.46752 3.48458 3.93951 3.94823 4.09375 4.49199 4.50137 4.73129 4.80016 4.90355 5.01095 5.12322 5.17098 5.26366 5.28735 5.47394 5.51095 5.59834 5.64726 5.70703 5.75676 5.79921 5.82531 6.11251 6.16116 6.20686 6.29744 6.55754 6.60598 6.61491 6.67260 6.73698 6.95168 7.17509 7.45770 7.56021 7.71008 7.83509 8.06574 8.23650 8.32808 9.20560 9.81232 10.44776 11.41364 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.006852 B = 0.004410 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.262019 B = 6348.105299 C = 9730.074102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.139 5.139 3 N -0.060 5.060 4 N -0.253 5.253 5 C 0.140 3.860 6 C 0.614 3.386 7 O -0.503 6.503 8 N -0.686 5.686 9 C 0.129 3.871 10 H 0.094 0.906 11 C 0.171 3.829 12 N -0.603 5.603 13 C -0.233 4.233 14 H 0.080 0.920 15 C -0.005 4.005 16 N -0.919 5.919 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.147 3.853 22 C -0.074 4.074 23 H 0.090 0.910 24 C -0.059 4.059 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.122 4.122 29 C -0.117 4.117 30 N -0.249 5.249 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.406 0.594 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.254 0.746 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.558 7.870 -14.519 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.052 5.052 3 N -0.053 5.053 4 N -0.128 5.128 5 C -0.145 4.145 6 C 0.393 3.607 7 O -0.374 6.374 8 N -0.338 5.338 9 C 0.025 3.975 10 H 0.112 0.888 11 C 0.046 3.954 12 N -0.330 5.330 13 C -0.361 4.361 14 H 0.098 0.902 15 C -0.202 4.202 16 N -0.565 5.565 17 Si 0.743 3.257 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.021 3.979 22 C -0.094 4.094 23 H 0.109 0.891 24 C -0.060 4.060 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.150 4.150 28 C -0.140 4.140 29 C -0.135 4.135 30 N -0.103 5.103 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.242 0.758 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.058 7.412 -14.265 19.512 hybrid contribution 0.509 -0.052 0.861 1.002 sum -10.549 7.361 -13.404 18.577 Atomic orbital electron populations 1.22514 0.68665 1.07204 1.06252 1.50237 1.11059 1.00771 1.43098 1.78895 0.96474 1.14114 1.15860 1.76125 1.09952 1.10313 1.16405 1.25485 0.93305 0.90180 1.05497 1.16042 0.80686 0.85750 0.78210 1.90868 1.85314 1.12656 1.48562 1.45607 1.04290 1.10925 1.72932 1.22667 0.81301 0.92493 1.01048 0.88788 1.21543 0.84220 1.01259 0.88413 1.44375 1.01525 1.81606 1.05453 1.18993 0.89910 1.40626 0.86528 0.90235 1.24817 0.95804 1.01648 0.97901 1.69940 1.06610 1.53953 1.26028 0.86198 0.78821 0.78141 0.82569 1.21154 1.21640 1.21107 1.21610 0.93617 0.95588 0.87127 1.21685 0.96835 1.00890 0.90006 0.89148 1.19800 0.98010 0.93199 0.94954 1.21131 0.99343 0.97858 0.94541 1.21110 1.00382 0.98220 0.94002 1.21063 1.01688 0.92838 0.99440 1.21059 1.00794 0.97500 0.94693 1.21057 1.00734 0.97928 0.93777 1.75109 1.02550 1.14150 1.18466 0.87768 0.86776 0.86672 0.75818 0.92756 0.92796 0.93592 0.93524 0.95452 0.85628 0.86364 0.86672 0.86531 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.62 59.84 0.70 1.12 16 2 N -0.14 -1.59 4.39 -16.65 -0.07 -1.66 16 3 N -0.06 -0.79 13.23 60.35 0.80 0.01 16 4 N -0.25 -3.89 12.26 32.10 0.39 -3.49 16 5 C 0.14 2.33 8.14 -156.24 -1.27 1.06 16 6 C 0.61 11.49 7.83 -12.25 -0.10 11.39 16 7 O -0.50 -11.02 16.82 5.34 0.09 -10.93 16 8 N -0.69 -11.85 5.13 -52.92 -0.27 -12.12 16 9 C 0.13 2.45 2.65 -66.11 -0.18 2.28 16 10 H 0.09 1.86 6.79 -51.92 -0.35 1.51 16 11 C 0.17 4.17 5.12 -3.07 -0.02 4.16 16 12 N -0.60 -15.05 3.39 -170.08 -0.58 -15.62 16 13 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 16 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.15 2.92 6.63 -2.53 -0.02 2.90 16 22 C -0.07 -1.24 2.87 -89.63 -0.26 -1.50 16 23 H 0.09 1.44 7.83 -51.93 -0.41 1.03 16 24 C -0.06 -0.87 5.00 -104.63 -0.52 -1.39 16 25 C -0.11 -1.61 8.31 -39.59 -0.33 -1.94 16 26 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 27 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 28 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 29 C -0.12 -1.52 9.69 -39.58 -0.38 -1.90 16 30 N -0.25 -3.78 12.17 32.11 0.39 -3.39 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.41 6.15 8.27 -40.82 -0.34 5.81 16 35 H 0.05 1.47 7.27 -51.93 -0.38 1.09 16 36 H 0.05 1.52 7.51 -51.93 -0.39 1.13 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.54 6.63 -51.93 -0.34 0.20 16 40 H 0.13 1.88 7.01 -52.48 -0.37 1.51 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.36 7.99 -52.49 -0.42 0.94 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -35.41 374.51 -7.37 -42.78 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.50 Total: 4.63 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.82 Total: 3.72 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 1.23 Total: -62.98 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.41 -7.37 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086604763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.713 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds