Wall clock time and date at job start Wed Apr 1 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28723 * 125.31702 * 2 1 4 4 N 1.28984 * 108.98786 * 179.97438 * 3 2 1 5 5 C 1.34186 * 107.25332 * 359.97438 * 4 3 2 6 6 C 1.48009 * 126.70158 * 179.97438 * 5 4 3 7 7 O 1.21534 * 119.99961 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99639 * 0.02597 * 6 5 4 9 9 C 1.46497 * 119.99893 * 179.97438 * 8 6 5 10 10 H 1.09010 * 110.63997 * 36.68927 * 9 8 6 11 11 C 1.54315 * 110.71985 * 273.55028 * 9 8 6 12 12 N 1.47023 * 107.27233 * 219.44363 * 11 9 8 13 13 C 1.36939 * 125.65346 * 178.90989 * 12 11 9 14 14 H 1.07994 * 119.99942 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99694 * 0.02562 * 13 12 11 16 16 N 1.31615 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00045 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47396 * 59.99460 * 17 15 13 19 19 H 1.48497 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46734 * 299.99800 * 17 15 13 21 21 C 1.47423 * 108.70002 * 358.93789 * 12 11 9 22 22 C 1.54906 * 104.83376 * 24.12852 * 21 12 11 23 23 H 1.09002 * 111.00282 * 81.06112 * 22 21 12 24 24 C 1.50699 * 111.00814 * 204.91442 * 22 21 12 25 25 C 1.38231 * 120.00135 * 51.92455 * 24 22 21 26 26 C 1.38232 * 120.00228 * 179.81567 * 25 24 22 27 27 C 1.38230 * 119.99794 * 0.38806 * 26 25 24 28 28 C 1.38234 * 120.00260 * 359.86594 * 27 26 25 29 29 C 1.38236 * 119.99965 * 359.94865 * 28 27 26 30 30 N 1.28872 * 125.32531 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47359 * 90.02388 * 1 2 3 32 32 H 1.09000 * 109.46766 * 210.02177 * 1 2 3 33 33 H 1.08999 * 109.47627 * 330.02417 * 1 2 3 34 34 H 0.96997 * 119.99719 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.88562 * 338.85592 * 11 9 8 36 36 H 1.09000 * 109.88738 * 99.87288 * 11 9 8 37 37 H 0.96999 * 120.00030 * 180.02562 * 16 15 13 38 38 H 1.09005 * 110.36578 * 142.97176 * 21 12 11 39 39 H 1.09004 * 110.36802 * 265.17790 * 21 12 11 40 40 H 1.08009 * 119.99854 * 359.97438 * 25 24 22 41 41 H 1.08006 * 120.00134 * 180.23356 * 26 25 24 42 42 H 1.08008 * 119.99606 * 179.83675 * 27 26 25 43 43 H 1.07999 * 120.00329 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.00130 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6877 0.0005 5 6 3.4685 -0.6540 0.0015 6 6 4.6693 -1.5193 0.0018 7 8 4.5470 -2.7285 0.0022 8 7 5.8985 -0.9662 0.0017 9 6 7.0870 -1.8227 0.0026 10 1 6.9207 -2.7114 -0.6063 11 6 7.4774 -2.2133 1.4436 12 7 8.9449 -2.1753 1.5238 13 6 9.6902 -2.4382 2.6421 14 1 10.7679 -2.3829 2.5981 15 6 9.0605 -2.7757 3.8323 16 7 7.7472 -2.8425 3.8860 17 14 10.0771 -3.1336 5.3580 18 1 10.8852 -1.9374 5.7063 19 1 9.1732 -3.4660 6.4883 20 1 10.9811 -4.2815 5.0924 21 6 9.4812 -1.8067 0.2010 22 6 8.3298 -1.0375 -0.4934 23 1 8.2956 -0.0004 -0.1594 24 6 8.4551 -1.1158 -1.9931 25 6 8.6016 -2.3435 -2.6113 26 6 8.7127 -2.4157 -3.9873 27 6 8.6854 -1.2595 -4.7444 28 6 8.5442 -0.0314 -4.1259 29 6 8.4293 0.0405 -2.7502 30 7 2.2101 -1.0514 0.0005 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 5.9960 -0.0012 0.0018 35 1 7.0491 -1.5018 2.1495 36 1 7.1176 -3.2179 1.6658 37 1 7.3071 -3.0780 4.7177 38 1 10.3546 -1.1638 0.3114 39 1 9.7388 -2.7009 -0.3666 40 1 8.6267 -3.2466 -2.0194 41 1 8.8234 -3.3752 -4.4705 42 1 8.7749 -1.3158 -5.8193 43 1 8.5233 0.8720 -4.7174 44 1 8.3194 1.0001 -2.2669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086604763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:18 Heat of formation + Delta-G solvation = 134.614610 kcal Electronic energy + Delta-G solvation = -29488.217913 eV Core-core repulsion = 25444.009737 eV Total energy + Delta-G solvation = -4044.208177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.57725 -41.34165 -40.18472 -38.65135 -36.37713 -35.69030 -34.40960 -34.29868 -32.56449 -31.70922 -30.51610 -29.43144 -28.61837 -26.89098 -25.93960 -24.12875 -23.79219 -23.11311 -22.67739 -21.58209 -21.23627 -19.55000 -18.93875 -18.73716 -17.97753 -17.86474 -17.31763 -16.83039 -16.19515 -16.04073 -15.96912 -15.49046 -15.33947 -15.24962 -14.67154 -14.34788 -14.25166 -14.14696 -14.07227 -13.92074 -13.78581 -13.59876 -13.21497 -13.03354 -12.75618 -12.66698 -12.56838 -12.38184 -12.27564 -12.15767 -11.99021 -11.87746 -11.66909 -11.63561 -11.51538 -11.48667 -10.73820 -10.30731 -9.72810 -9.50336 -8.93053 -7.83991 -5.22198 -0.20501 0.22202 0.50004 0.59147 0.78296 1.46101 1.49948 1.56125 1.67628 1.87356 2.49349 2.73924 2.91278 3.02687 3.34491 3.53902 3.70758 3.90490 3.94352 3.96631 4.04855 4.21485 4.23321 4.24067 4.27946 4.36667 4.48754 4.52163 4.56031 4.61654 4.73123 4.82639 4.94095 4.96206 5.00779 5.16684 5.23287 5.28548 5.44201 5.52537 5.66071 5.69961 5.71074 5.83200 6.14816 6.19793 6.21475 6.82483 6.98969 7.06698 7.74302 8.37638 9.25105 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.006852 B = 0.004410 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.262019 B = 6348.105299 C = 9730.074102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.114 5.114 3 N -0.057 5.057 4 N -0.263 5.263 5 C 0.120 3.880 6 C 0.615 3.385 7 O -0.545 6.545 8 N -0.675 5.675 9 C 0.147 3.853 10 H 0.084 0.916 11 C 0.188 3.812 12 N -0.622 5.622 13 C -0.242 4.242 14 H 0.090 0.910 15 C -0.066 4.066 16 N -0.953 5.953 17 Si 0.980 3.020 18 H -0.273 1.273 19 H -0.298 1.298 20 H -0.276 1.276 21 C 0.143 3.857 22 C -0.050 4.050 23 H 0.103 0.897 24 C -0.076 4.076 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.121 4.121 29 C -0.119 4.119 30 N -0.263 5.263 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.419 0.581 35 H 0.021 0.979 36 H 0.001 0.999 37 H 0.245 0.755 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 10.001 -16.802 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.030 5.030 3 N -0.050 5.050 4 N -0.138 5.138 5 C -0.163 4.163 6 C 0.395 3.605 7 O -0.419 6.419 8 N -0.326 5.326 9 C 0.041 3.959 10 H 0.102 0.898 11 C 0.062 3.938 12 N -0.349 5.349 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.259 4.259 16 N -0.601 5.601 17 Si 0.808 3.192 18 H -0.198 1.198 19 H -0.225 1.225 20 H -0.202 1.202 21 C 0.018 3.982 22 C -0.070 4.070 23 H 0.121 0.879 24 C -0.077 4.077 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.139 4.139 29 C -0.136 4.136 30 N -0.118 5.118 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.256 0.744 35 H 0.039 0.961 36 H 0.019 0.981 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.279 9.603 -16.591 22.242 hybrid contribution 0.448 -0.696 1.462 1.680 sum -10.831 8.907 -15.128 20.628 Atomic orbital electron populations 1.23292 0.64803 1.09463 1.08885 1.50834 1.12764 0.99388 1.40012 1.78811 0.95981 1.14364 1.15891 1.76083 1.11215 1.09498 1.16972 1.24932 0.93046 0.90505 1.07852 1.16309 0.81531 0.85538 0.77101 1.90836 1.86071 1.14519 1.50464 1.45434 1.03597 1.11303 1.72276 1.22226 0.83064 0.93269 0.97295 0.89787 1.21119 0.84175 0.97428 0.91087 1.44639 1.01810 1.81603 1.06823 1.19467 0.90742 1.39433 0.87435 0.89202 1.25692 0.96815 1.02280 1.01075 1.70207 1.08374 1.55539 1.26023 0.85133 0.77225 0.78392 0.78472 1.19831 1.22489 1.20212 1.21793 0.95079 0.96287 0.85065 1.21454 0.93465 1.00369 0.91722 0.87888 1.19587 1.00530 0.94268 0.93291 1.21143 1.00678 0.97295 0.95661 1.21354 1.00021 0.99799 0.93195 1.21468 0.99783 0.92274 1.00964 1.21440 0.99355 0.98803 0.94294 1.21279 1.00018 0.97797 0.94550 1.75063 1.02365 1.15598 1.18807 0.84816 0.85286 0.83733 0.74371 0.96114 0.98075 0.94617 0.92475 0.95049 0.87340 0.84686 0.83703 0.83522 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.62 127.77 1.49 1.92 16 2 N -0.11 -2.43 4.39 -206.59 -0.91 -3.33 16 3 N -0.06 -1.43 13.23 37.02 0.49 -0.94 16 4 N -0.26 -7.97 12.26 -52.36 -0.64 -8.61 16 5 C 0.12 4.07 8.14 137.15 1.12 5.18 16 6 C 0.61 24.07 7.83 86.83 0.68 24.75 16 7 O -0.54 -25.39 16.82 -3.82 -0.06 -25.45 16 8 N -0.67 -24.25 5.13 -439.64 -2.25 -26.50 16 9 C 0.15 5.87 2.65 46.18 0.12 5.99 16 10 H 0.08 3.56 6.79 -2.38 -0.02 3.54 16 11 C 0.19 9.83 5.12 86.73 0.44 10.28 16 12 N -0.62 -32.36 3.39 -692.01 -2.35 -34.71 16 13 C -0.24 -13.69 10.28 84.03 0.86 -12.82 16 14 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 15 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 16 N -0.95 -59.78 10.31 21.65 0.22 -59.55 16 17 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 C 0.14 5.76 6.63 86.85 0.58 6.34 16 22 C -0.05 -1.69 2.87 -10.15 -0.03 -1.72 16 23 H 0.10 3.19 7.83 -2.39 -0.02 3.17 16 24 C -0.08 -2.18 5.00 -19.87 -0.10 -2.28 16 25 C -0.13 -3.73 8.31 22.27 0.19 -3.54 16 26 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 27 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 28 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 29 C -0.12 -2.76 9.69 22.27 0.22 -2.55 16 30 N -0.26 -7.89 12.17 -52.31 -0.64 -8.52 16 31 H 0.13 0.14 8.14 -2.39 -0.02 0.13 16 32 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.14 0.09 8.14 -2.39 -0.02 0.08 16 34 H 0.42 12.86 8.27 -92.71 -0.77 12.09 16 35 H 0.02 1.20 7.27 -2.39 -0.02 1.19 16 36 H 0.00 0.06 7.51 -2.39 -0.02 0.04 16 37 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.06 2.18 8.14 -2.38 -0.02 2.17 16 39 H 0.03 1.26 6.63 -2.39 -0.02 1.25 16 40 H 0.11 3.40 7.01 -2.91 -0.02 3.38 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.14 2.68 7.99 -2.91 -0.02 2.65 16 Total: -1.00 -82.33 374.51 2.87 -79.47 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.28 Total: 18.39 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.70 Total: 21.02 kcal Atomic # 7 Polarization: -136.10 SS G_CDS: -6.08 Total: -142.17 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -82.33 2.87 -79.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086604763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.081 kcal (2) G-P(sol) polarization free energy of solvation -82.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds