Wall clock time and date at job start Wed Apr 1 2020 00:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87195 * 2 1 4 4 C 1.54328 * 109.87848 * 238.82680 * 2 1 3 5 5 H 1.09001 * 110.72067 * 336.74921 * 4 2 1 6 6 N 1.46503 * 110.72149 * 100.02625 * 4 2 1 7 7 C 1.34769 * 119.99872 * 204.99931 * 6 4 2 8 8 O 1.21524 * 120.00085 * 359.97438 * 7 6 4 9 9 C 1.48165 * 120.00207 * 179.97438 * 7 6 4 10 10 C 1.39235 * 119.69206 * 179.97438 * 9 7 6 11 11 C 1.38702 * 119.19345 * 179.97438 * 10 9 7 12 12 C 1.38414 * 118.55073 * 0.02562 * 11 10 9 13 13 C 1.39250 * 119.30459 * 359.97438 * 12 11 10 14 14 N 1.39855 * 119.62349 * 180.02562 * 13 12 11 15 15 C 1.34804 * 126.84671 * 179.71302 * 14 13 12 16 16 N 1.30815 * 108.01555 * 179.86762 * 15 14 13 17 17 C 1.33294 * 109.84778 * 0.40613 * 16 15 14 18 18 N 1.30719 * 109.01421 * 359.74277 * 17 16 15 19 19 N 1.31977 * 120.76145 * 359.74495 * 13 12 11 20 20 C 1.55161 * 102.94007 * 218.38605 * 4 2 1 21 21 C 1.54911 * 101.58121 * 35.50246 * 20 4 2 22 22 N 1.47019 * 109.88443 * 121.01780 * 2 1 3 23 23 C 1.36939 * 125.65017 * 298.31534 * 22 2 1 24 24 H 1.07999 * 119.99598 * 341.50761 * 23 22 2 25 25 C 1.38807 * 120.00201 * 161.49470 * 23 22 2 26 26 N 1.31619 * 120.00244 * 157.62938 * 25 23 22 27 27 Si 1.86806 * 119.99966 * 337.62860 * 25 23 22 28 28 H 1.48497 * 109.47000 * 84.53743 * 27 25 23 29 29 H 1.48500 * 109.47414 * 204.54010 * 27 25 23 30 30 H 1.48499 * 109.47120 * 324.53683 * 27 25 23 31 31 H 1.09006 * 109.46791 * 300.43483 * 1 2 3 32 32 H 1.09002 * 109.47241 * 180.44268 * 1 2 3 33 33 H 1.08997 * 109.47535 * 60.43256 * 1 2 3 34 34 H 0.96998 * 119.99549 * 24.99645 * 6 4 2 35 35 H 1.08006 * 120.40651 * 0.02562 * 10 9 7 36 36 H 1.07996 * 120.72678 * 180.02562 * 11 10 9 37 37 H 1.08005 * 120.34946 * 180.02562 * 12 11 10 38 38 H 1.08002 * 125.99493 * 359.97438 * 15 14 13 39 39 H 1.07998 * 125.49187 * 179.75199 * 17 16 15 40 40 H 1.08996 * 111.00629 * 277.42635 * 20 4 2 41 41 H 1.09003 * 111.00182 * 153.57436 * 20 4 2 42 42 H 1.08999 * 110.37163 * 204.14908 * 21 20 4 43 43 H 1.09003 * 110.36773 * 81.82763 * 21 20 4 44 44 H 0.96996 * 120.00123 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 -1.2418 5 1 1.3050 -1.4482 -1.6163 6 7 2.4553 0.1929 -2.2879 7 6 2.4580 -0.1933 -3.5791 8 8 2.1285 -1.3248 -3.8755 9 6 2.8625 0.7617 -4.6372 10 6 2.8634 0.3557 -5.9690 11 6 3.2435 1.2583 -6.9512 12 6 3.6106 2.5368 -6.5684 13 6 3.5873 2.8772 -5.2184 14 7 3.9564 4.1673 -4.8242 15 6 3.9819 4.6521 -3.5667 16 7 4.3849 5.8955 -3.6205 17 6 4.6165 6.2417 -4.8867 18 7 4.3685 5.2177 -5.6604 19 7 3.2155 1.9981 -4.3069 20 6 3.2876 -1.5152 -0.6904 21 6 2.8146 -1.8784 0.7393 22 7 2.0300 -0.7124 1.1848 23 6 1.8051 -0.3522 2.4867 24 1 1.4863 0.6526 2.7215 25 6 1.9867 -1.2784 3.5045 26 7 2.2077 -0.8686 4.7356 27 14 1.9173 -3.1066 3.1269 28 1 3.2478 -3.5649 2.6526 29 1 1.5463 -3.8523 4.3563 30 1 0.9027 -3.3559 2.0716 31 1 -0.3633 0.5206 0.8861 32 1 -0.3634 -1.0276 0.0079 33 1 -0.3634 0.5071 -0.8938 34 1 2.7186 1.0960 -2.0512 35 1 2.5708 -0.6496 -6.2343 36 1 3.2528 0.9699 -7.9919 37 1 3.9112 3.2631 -7.3092 38 1 3.7177 4.1088 -2.6714 39 1 4.9547 7.2118 -5.2196 40 1 4.1654 -0.8698 -0.6594 41 1 3.4851 -2.4128 -1.2764 42 1 3.6716 -2.0319 1.3950 43 1 2.1886 -2.7705 0.7166 44 1 2.3350 -1.5159 5.4467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088948236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:56 Heat of formation + Delta-G solvation = 141.003946 kcal Electronic energy + Delta-G solvation = -29094.705735 eV Core-core repulsion = 25050.774621 eV Total energy + Delta-G solvation = -4043.931114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77192 -41.05334 -39.53773 -37.89534 -34.75092 -34.40828 -33.30102 -32.10428 -31.69405 -30.75174 -30.58141 -29.34112 -25.96585 -25.09803 -24.44892 -23.92307 -22.48846 -22.14904 -21.30994 -20.57622 -19.91968 -18.91564 -17.93937 -16.96776 -16.59631 -16.50669 -16.29261 -15.95565 -15.66519 -15.27584 -15.06804 -14.62266 -14.52799 -14.27989 -14.06193 -13.75716 -13.41335 -13.04289 -12.83667 -12.77475 -12.64712 -12.16735 -11.92962 -11.61455 -11.43936 -11.24364 -11.02590 -10.84191 -10.80906 -10.58084 -10.53662 -10.51339 -10.33085 -10.19845 -10.02669 -9.96521 -9.46129 -9.22078 -8.92973 -8.69137 -7.11112 -5.96439 -3.27816 -0.05224 0.27416 1.37141 1.41357 2.41828 2.52960 2.86863 3.34462 3.37214 3.48610 3.50140 3.53637 3.85788 3.93493 4.34974 4.38842 4.40919 4.53533 4.64189 4.82113 4.87997 4.93976 5.08672 5.16962 5.29906 5.30161 5.51054 5.55051 5.63656 5.74406 5.80443 5.88682 5.90596 6.00216 6.12337 6.21819 6.35291 6.36867 6.38647 6.58788 6.69403 6.73618 6.85582 6.94828 7.44534 7.57814 7.67067 8.02816 8.29121 8.80157 9.66319 10.12971 11.19402 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002794 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.260703 B =10019.252849 C =11446.209229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.048 0.952 4 C 0.131 3.869 5 H 0.101 0.899 6 N -0.691 5.691 7 C 0.571 3.429 8 O -0.527 6.527 9 C 0.121 3.879 10 C -0.117 4.117 11 C -0.057 4.057 12 C -0.137 4.137 13 C 0.363 3.637 14 N -0.336 5.336 15 C 0.297 3.703 16 N -0.537 5.537 17 C 0.216 3.784 18 N -0.313 5.313 19 N -0.478 5.478 20 C -0.140 4.140 21 C 0.111 3.889 22 N -0.600 5.600 23 C -0.239 4.239 24 H 0.093 0.907 25 C 0.024 3.976 26 N -0.908 5.908 27 Si 0.880 3.120 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.275 1.275 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.409 0.591 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.230 0.770 39 H 0.227 0.773 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 8.297 -25.647 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.066 0.934 4 C 0.026 3.974 5 H 0.119 0.881 6 N -0.340 5.340 7 C 0.354 3.646 8 O -0.403 6.403 9 C -0.019 4.019 10 C -0.138 4.138 11 C -0.083 4.083 12 C -0.160 4.160 13 C 0.133 3.867 14 N -0.121 5.121 15 C 0.001 3.999 16 N -0.262 5.262 17 C -0.086 4.086 18 N -0.139 5.139 19 N -0.194 5.194 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.366 4.366 24 H 0.111 0.889 25 C -0.175 4.175 26 N -0.551 5.551 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.231 1.231 30 H -0.201 1.201 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.246 0.754 39 H 0.243 0.757 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.375 7.924 -25.149 26.583 hybrid contribution 0.011 -0.947 -0.603 1.122 sum 3.386 6.977 -25.752 26.894 Atomic orbital electron populations 1.22211 0.97103 1.01577 1.00635 1.21082 0.92950 0.95318 0.85808 0.93447 1.22269 0.97344 0.91068 0.86695 0.88079 1.45885 1.65961 1.16823 1.05362 1.17682 0.78410 0.86161 0.82359 1.90819 1.48330 1.19019 1.82163 1.20991 0.97996 0.89025 0.93859 1.22247 0.97535 1.02241 0.91810 1.21613 0.94159 0.91586 1.00940 1.21876 1.00868 0.98399 0.94829 1.17526 0.96888 0.82642 0.89671 1.47536 1.49529 1.08479 1.06590 1.26553 0.92941 0.90455 0.89985 1.70777 1.21902 1.11919 1.21639 1.26312 0.96556 0.98970 0.86789 1.78143 1.23225 0.95591 1.16911 1.66630 1.12645 1.02452 1.37646 1.23150 0.97510 1.00124 0.97195 1.21966 0.95313 0.91159 0.92970 1.44811 1.57508 1.28872 1.01465 1.18573 1.42639 0.96788 0.78565 0.88928 1.24981 1.00059 0.97642 0.94816 1.69831 1.50650 1.34004 1.00617 0.87020 0.78253 0.87480 0.76176 1.21187 1.23083 1.20129 0.91860 0.93002 0.94074 0.75431 0.82287 0.82711 0.82823 0.75373 0.75692 0.90797 0.91121 0.91843 0.95412 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.14 37.16 0.34 -2.40 16 2 C 0.16 2.85 3.48 -66.95 -0.23 2.62 16 3 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 4 C 0.13 2.09 2.84 -66.09 -0.19 1.90 16 5 H 0.10 1.70 7.26 -51.93 -0.38 1.33 16 6 N -0.69 -9.07 5.17 -52.86 -0.27 -9.34 16 7 C 0.57 7.47 7.81 -12.19 -0.10 7.37 16 8 O -0.53 -8.25 15.96 5.34 0.09 -8.17 16 9 C 0.12 1.27 6.75 -83.02 -0.56 0.71 16 10 C -0.12 -0.95 9.63 -39.04 -0.38 -1.33 16 11 C -0.06 -0.34 10.16 -39.35 -0.40 -0.74 16 12 C -0.14 -1.02 9.72 -39.14 -0.38 -1.40 16 13 C 0.36 3.49 7.56 -154.50 -1.17 2.32 16 14 N -0.34 -3.36 3.81 -13.33 -0.05 -3.41 16 15 C 0.30 2.87 12.26 -90.33 -1.11 1.77 16 16 N -0.54 -5.59 11.19 -15.73 -0.18 -5.76 16 17 C 0.22 1.84 13.03 -91.76 -1.20 0.65 16 18 N -0.31 -3.05 12.01 29.30 0.35 -2.69 16 19 N -0.48 -4.86 9.07 -8.84 -0.08 -4.94 16 20 C -0.14 -2.37 6.77 -24.58 -0.17 -2.53 16 21 C 0.11 2.36 4.69 -2.53 -0.01 2.35 16 22 N -0.60 -13.78 2.94 -162.57 -0.48 -14.25 16 23 C -0.24 -6.50 10.17 -15.06 -0.15 -6.65 16 24 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 25 C 0.02 0.68 5.43 -17.43 -0.09 0.58 16 26 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 27 Si 0.88 22.29 24.27 -169.99 -4.13 18.16 16 28 H -0.28 -6.95 6.49 56.52 0.37 -6.58 16 29 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 30 H -0.28 -6.89 6.66 56.52 0.38 -6.51 16 31 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.41 4.77 7.70 -40.82 -0.31 4.45 16 35 H 0.16 1.17 7.63 -52.48 -0.40 0.77 16 36 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 37 H 0.15 0.98 7.72 -52.48 -0.41 0.57 16 38 H 0.23 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.23 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.43 6.64 -51.93 -0.34 1.09 16 43 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -33.94 369.47 -9.72 -43.66 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.53 Total: 2.74 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -5.79 Total: 5.22 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.07 Total: -67.18 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.13 Total: 18.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.94 -9.72 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088948236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.664 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds