Wall clock time and date at job start Wed Apr 1 2020 00:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.39930 * 125.74792 * 300.02692 * 4 2 1 6 6 C 1.30406 * 108.95821 * 179.97438 * 5 4 2 7 7 C 1.41342 * 108.04940 * 0.02562 * 6 5 4 8 8 C 1.47306 * 126.43294 * 180.02562 * 7 6 5 9 9 O 1.21622 * 119.99374 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00388 * 359.96696 * 8 7 6 11 11 C 1.46495 * 120.00114 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47172 * 325.00626 * 11 10 8 13 13 C 1.53003 * 109.46952 * 85.00476 * 11 10 8 14 14 C 1.53000 * 109.47218 * 205.00035 * 11 10 8 15 15 C 1.53004 * 109.46813 * 65.00771 * 14 11 10 16 16 H 1.09000 * 109.46846 * 304.99720 * 15 14 11 17 17 C 1.53001 * 109.47015 * 184.99973 * 15 14 11 18 18 N 1.46496 * 109.47581 * 64.99741 * 15 14 11 19 19 C 1.36937 * 120.00356 * 205.00414 * 18 15 14 20 20 H 1.08006 * 119.99700 * 359.97438 * 19 18 15 21 21 C 1.38808 * 120.00278 * 179.97438 * 19 18 15 22 22 N 1.31624 * 119.99981 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47257 * 89.99840 * 23 21 19 25 25 H 1.48497 * 109.46845 * 209.99588 * 23 21 19 26 26 H 1.48503 * 109.46845 * 329.99781 * 23 21 19 27 27 C 1.34349 * 125.74937 * 119.71121 * 4 2 1 28 28 Cl 1.73596 * 126.31869 * 0.02562 * 27 4 2 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08001 * 125.97679 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99481 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47234 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47160 * 299.99920 * 13 11 10 40 40 H 1.09002 * 109.46972 * 59.99541 * 13 11 10 41 41 H 1.09000 * 109.47041 * 184.99616 * 14 11 10 42 42 H 1.08994 * 109.47678 * 305.00684 * 14 11 10 43 43 H 1.08992 * 109.46858 * 299.99507 * 17 15 14 44 44 H 1.09002 * 109.47476 * 59.99926 * 17 15 14 45 45 H 1.09001 * 109.46995 * 179.97438 * 17 15 14 46 46 H 0.97003 * 120.00113 * 24.99937 * 18 15 14 47 47 H 0.97000 * 120.00135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7551 -0.3193 2.5194 6 6 2.3486 -1.1592 3.3212 7 6 3.0258 -2.1153 2.5307 8 6 3.8267 -3.2490 3.0239 9 8 4.3614 -4.0045 2.2349 10 7 3.9671 -3.4489 4.3493 11 6 4.7631 -4.5767 4.8397 12 1 4.6421 -5.4264 4.1677 13 6 6.2384 -4.1747 4.8928 14 6 4.2894 -4.9639 6.2420 15 6 2.8524 -5.4843 6.1692 16 1 2.2200 -4.7387 5.6872 17 6 2.3353 -5.7539 7.5837 18 7 2.8214 -6.7263 5.3930 19 6 1.6700 -7.1083 4.7577 20 1 0.7845 -6.4940 4.8294 21 6 1.6409 -8.2848 4.0218 22 7 0.5339 -8.6522 3.4117 23 14 3.1722 -9.3476 3.8985 24 1 3.1808 -10.3340 5.0085 25 1 3.1732 -10.0652 2.5985 26 1 4.3798 -8.4882 3.9905 27 6 2.7895 -1.7907 1.2075 28 17 3.3836 -2.6442 -0.1825 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3265 -1.1294 4.4006 37 1 3.5403 -2.8465 4.9784 38 1 6.8307 -5.0136 5.2580 39 1 6.5760 -3.8988 3.8938 40 1 6.3595 -3.3249 5.5647 41 1 4.9380 -5.7430 6.6424 42 1 4.3268 -4.0901 6.8924 43 1 2.9677 -6.4994 8.0657 44 1 2.3583 -4.8298 8.1613 45 1 1.3115 -6.1242 7.5319 46 1 3.6166 -7.2781 5.3288 47 1 0.5136 -9.4742 2.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135091861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:50 Heat of formation + Delta-G solvation = 37.177789 kcal Electronic energy + Delta-G solvation = -28428.328765 eV Core-core repulsion = 24481.002905 eV Total energy + Delta-G solvation = -3947.325861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58758 -39.18057 -36.96847 -36.81461 -35.94283 -34.44860 -32.12459 -31.22734 -30.75963 -29.54323 -29.08436 -27.69055 -26.34877 -23.78277 -23.24710 -23.00952 -20.93433 -20.53505 -19.94805 -19.66888 -18.05107 -17.51370 -16.46103 -15.91641 -15.77199 -15.02285 -14.81881 -14.68307 -14.38344 -14.08334 -13.81873 -13.59357 -13.39728 -13.30928 -12.90138 -12.72483 -12.62152 -12.56159 -12.33459 -12.10863 -12.09776 -12.00964 -11.91320 -11.75911 -11.64384 -11.33421 -11.14755 -10.86736 -10.85322 -10.60153 -10.40381 -10.20475 -9.88424 -9.61660 -9.48784 -9.48309 -8.83602 -8.82890 -8.55691 -7.15905 -5.66419 -3.00759 1.21895 1.28668 2.07163 2.30866 3.46682 3.50081 3.50561 3.54613 3.72136 4.03087 4.46241 4.50009 4.63395 4.69945 4.90997 4.98492 5.07800 5.13951 5.20869 5.31690 5.32670 5.35944 5.39203 5.52390 5.60775 5.67506 5.70645 5.78891 5.84335 5.89998 5.95246 6.07975 6.15772 6.24916 6.33607 6.38756 6.40042 6.49488 6.64241 6.83160 6.94027 7.04955 7.24981 7.89893 8.09200 8.52467 8.67140 9.31467 10.04428 10.23492 11.52368 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003510 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.052608 B = 7974.559960 C = 8630.729282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.348 5.348 5 N -0.273 5.273 6 C 0.088 3.912 7 C -0.262 4.262 8 C 0.593 3.407 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.146 3.854 12 H 0.101 0.899 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.055 0.945 17 C -0.166 4.166 18 N -0.745 5.745 19 C -0.235 4.235 20 H 0.087 0.913 21 C 0.005 3.995 22 N -0.936 5.936 23 Si 0.882 3.118 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.181 3.819 28 Cl 0.027 6.973 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.197 0.803 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.056 0.944 46 H 0.359 0.641 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 22.039 -2.575 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.217 4.217 4 N -0.131 5.131 5 N -0.093 5.093 6 C -0.099 4.099 7 C -0.278 4.278 8 C 0.379 3.621 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.042 3.958 12 H 0.119 0.881 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.073 0.927 17 C -0.226 4.226 18 N -0.388 5.388 19 C -0.365 4.365 20 H 0.105 0.895 21 C -0.191 4.191 22 N -0.585 5.585 23 Si 0.713 3.287 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.023 3.977 28 Cl 0.056 6.944 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.213 0.787 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.192 0.808 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.579 22.506 -3.587 23.463 hybrid contribution 1.238 -1.463 0.079 1.918 sum 6.817 21.043 -3.508 22.396 Atomic orbital electron populations 1.22145 0.92369 1.03678 1.03765 1.21560 0.96402 0.94241 0.83281 1.22124 1.01907 0.93863 1.03810 1.48867 1.37714 1.19861 1.06706 1.77204 1.23452 1.23341 0.85332 1.23983 0.94162 0.91562 1.00230 1.19989 1.13274 1.04153 0.90406 1.16952 0.79640 0.82953 0.82581 1.90822 1.48335 1.46079 1.55250 1.45645 1.53541 1.30966 1.06117 1.20973 0.88945 0.89571 0.96320 0.88149 1.22192 0.96523 1.01277 1.01969 1.22218 0.98894 1.01012 0.95185 1.20197 0.92818 0.89293 0.90975 0.92697 1.22425 1.02119 0.99514 0.98501 1.42768 1.12018 1.23641 1.60371 1.19002 0.89895 1.04598 1.22968 0.89496 1.24625 0.96499 0.98102 0.99829 1.69700 1.25941 1.25063 1.37764 0.86575 0.84167 0.80914 0.77075 1.21382 1.21918 1.20150 1.22081 0.95177 0.89272 0.91137 1.98455 1.85091 1.73268 1.37614 0.90264 0.90705 0.91540 0.87721 0.90737 0.91908 0.90259 0.78670 0.77362 0.91995 0.92359 0.92973 0.90800 0.91551 0.93681 0.94377 0.92476 0.80780 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.44 37.16 0.35 -0.93 16 2 C 0.15 1.28 3.66 -67.93 -0.25 1.03 16 3 C -0.16 -1.09 9.45 37.15 0.35 -0.74 16 4 N -0.35 -4.22 3.25 -51.12 -0.17 -4.39 16 5 N -0.27 -3.39 12.33 30.87 0.38 -3.01 16 6 C 0.09 1.05 11.50 -16.98 -0.20 0.85 16 7 C -0.26 -3.89 6.13 -105.02 -0.64 -4.54 16 8 C 0.59 10.13 7.77 -12.57 -0.10 10.03 16 9 O -0.53 -11.03 15.31 5.26 0.08 -10.95 16 10 N -0.71 -10.25 4.44 -54.92 -0.24 -10.50 16 11 C 0.15 2.26 2.52 -67.93 -0.17 2.08 16 12 H 0.10 2.03 7.05 -51.93 -0.37 1.66 16 13 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 14 C -0.13 -1.90 4.29 -26.73 -0.11 -2.01 16 15 C 0.18 3.20 2.84 -67.93 -0.19 3.00 16 16 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 17 C -0.17 -2.76 9.49 37.16 0.35 -2.41 16 18 N -0.74 -17.38 4.30 -53.42 -0.23 -17.61 16 19 C -0.23 -6.68 10.41 -15.06 -0.16 -6.83 16 20 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.94 -30.24 13.97 55.49 0.78 -29.46 16 23 Si 0.88 23.02 27.74 -169.99 -4.71 18.30 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 26 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 27 C 0.18 2.60 7.53 -16.44 -0.12 2.48 16 28 Cl 0.03 0.39 27.00 -51.86 -1.40 -1.01 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.83 7.23 -51.93 -0.38 0.45 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.20 1.58 7.50 -52.49 -0.39 1.18 16 37 H 0.39 4.36 7.55 -40.82 -0.31 4.05 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.36 8.39 5.66 -40.82 -0.23 8.16 16 47 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -35.97 401.99 -7.67 -43.64 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.58 Total: 8.59 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.63 Total: 0.33 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: 0.52 Total: -64.96 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.30 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.40 Total: -1.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.97 -7.67 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135091861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.820 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds