Wall clock time and date at job start Wed Apr 1 2020 00:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.39930 * 125.74792 * 300.02692 * 4 2 1 6 6 C 1.30406 * 108.95821 * 179.97438 * 5 4 2 7 7 C 1.41342 * 108.04940 * 0.02562 * 6 5 4 8 8 C 1.47306 * 126.43294 * 180.02562 * 7 6 5 9 9 O 1.21622 * 119.99374 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00388 * 359.96696 * 8 7 6 11 11 C 1.46495 * 120.00114 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47172 * 325.00626 * 11 10 8 13 13 C 1.53003 * 109.46952 * 85.00476 * 11 10 8 14 14 C 1.53000 * 109.47218 * 205.00035 * 11 10 8 15 15 C 1.53004 * 109.46813 * 65.00771 * 14 11 10 16 16 H 1.09000 * 109.46846 * 304.99720 * 15 14 11 17 17 C 1.53001 * 109.47015 * 184.99973 * 15 14 11 18 18 N 1.46496 * 109.47581 * 64.99741 * 15 14 11 19 19 C 1.36937 * 120.00356 * 205.00414 * 18 15 14 20 20 H 1.08006 * 119.99700 * 359.97438 * 19 18 15 21 21 C 1.38808 * 120.00278 * 179.97438 * 19 18 15 22 22 N 1.31624 * 119.99981 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47257 * 89.99840 * 23 21 19 25 25 H 1.48497 * 109.46845 * 209.99588 * 23 21 19 26 26 H 1.48503 * 109.46845 * 329.99781 * 23 21 19 27 27 C 1.34349 * 125.74937 * 119.71121 * 4 2 1 28 28 Cl 1.73596 * 126.31869 * 0.02562 * 27 4 2 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08001 * 125.97679 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99481 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47234 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47160 * 299.99920 * 13 11 10 40 40 H 1.09002 * 109.46972 * 59.99541 * 13 11 10 41 41 H 1.09000 * 109.47041 * 184.99616 * 14 11 10 42 42 H 1.08994 * 109.47678 * 305.00684 * 14 11 10 43 43 H 1.08992 * 109.46858 * 299.99507 * 17 15 14 44 44 H 1.09002 * 109.47476 * 59.99926 * 17 15 14 45 45 H 1.09001 * 109.46995 * 179.97438 * 17 15 14 46 46 H 0.97003 * 120.00113 * 24.99937 * 18 15 14 47 47 H 0.97000 * 120.00135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7551 -0.3193 2.5194 6 6 2.3486 -1.1592 3.3212 7 6 3.0258 -2.1153 2.5307 8 6 3.8267 -3.2490 3.0239 9 8 4.3614 -4.0045 2.2349 10 7 3.9671 -3.4489 4.3493 11 6 4.7631 -4.5767 4.8397 12 1 4.6421 -5.4264 4.1677 13 6 6.2384 -4.1747 4.8928 14 6 4.2894 -4.9639 6.2420 15 6 2.8524 -5.4843 6.1692 16 1 2.2200 -4.7387 5.6872 17 6 2.3353 -5.7539 7.5837 18 7 2.8214 -6.7263 5.3930 19 6 1.6700 -7.1083 4.7577 20 1 0.7845 -6.4940 4.8294 21 6 1.6409 -8.2848 4.0218 22 7 0.5339 -8.6522 3.4117 23 14 3.1722 -9.3476 3.8985 24 1 3.1808 -10.3340 5.0085 25 1 3.1732 -10.0652 2.5985 26 1 4.3798 -8.4882 3.9905 27 6 2.7895 -1.7907 1.2075 28 17 3.3836 -2.6442 -0.1825 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3265 -1.1294 4.4006 37 1 3.5403 -2.8465 4.9784 38 1 6.8307 -5.0136 5.2580 39 1 6.5760 -3.8988 3.8938 40 1 6.3595 -3.3249 5.5647 41 1 4.9380 -5.7430 6.6424 42 1 4.3268 -4.0901 6.8924 43 1 2.9677 -6.4994 8.0657 44 1 2.3583 -4.8298 8.1613 45 1 1.3115 -6.1242 7.5319 46 1 3.6166 -7.2781 5.3288 47 1 0.5136 -9.4742 2.8971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135091861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:49 Heat of formation + Delta-G solvation = 12.178889 kcal Electronic energy + Delta-G solvation = -28429.412799 eV Core-core repulsion = 24481.002905 eV Total energy + Delta-G solvation = -3948.409894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58424 -40.44650 -38.30940 -38.02757 -36.73277 -36.02652 -34.04125 -32.51046 -31.76268 -31.08580 -30.39171 -28.28495 -27.54499 -25.34850 -24.71174 -24.01333 -22.18057 -21.55334 -21.33784 -20.90842 -19.68404 -18.92236 -17.54802 -17.20216 -16.80138 -16.59502 -15.94078 -15.88155 -15.70205 -15.33970 -15.21832 -14.86505 -14.62322 -14.44724 -14.26089 -14.01153 -13.93122 -13.41854 -13.36333 -13.29053 -13.17181 -13.05744 -13.04071 -12.94213 -12.75573 -12.57615 -12.44395 -12.34806 -12.12774 -11.95231 -11.87736 -11.81447 -11.62301 -11.38298 -10.93266 -10.80996 -10.56343 -10.04522 -9.68398 -9.22364 -7.98325 -5.27555 0.13591 0.22897 1.06230 1.35318 1.40087 1.40605 1.45922 2.34616 2.50260 2.50990 3.21044 3.35245 3.71327 3.72638 3.81510 3.81580 3.92997 3.95696 4.04389 4.16146 4.42367 4.47047 4.58557 4.60927 4.62951 4.73034 4.73680 4.74146 4.83626 4.89540 4.97231 5.05681 5.07541 5.13772 5.16020 5.26727 5.30867 5.40040 5.45919 5.51500 5.66283 5.72788 5.84164 6.26856 6.26938 6.75089 7.15217 7.45296 7.94723 8.09859 9.24194 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003510 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.052608 B = 7974.559960 C = 8630.729282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.341 5.341 5 N -0.279 5.279 6 C 0.097 3.903 7 C -0.288 4.288 8 C 0.585 3.415 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.145 3.855 12 H 0.048 0.952 13 C -0.151 4.151 14 C -0.120 4.120 15 C 0.166 3.834 16 H 0.044 0.956 17 C -0.157 4.157 18 N -0.748 5.748 19 C -0.209 4.209 20 H 0.053 0.947 21 C -0.069 4.069 22 N -0.989 5.989 23 Si 0.947 3.053 24 H -0.275 1.275 25 H -0.305 1.305 26 H -0.255 1.255 27 C 0.167 3.833 28 Cl 0.019 6.981 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.233 0.767 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.023 0.977 46 H 0.361 0.639 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 24.356 -0.533 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 C -0.209 4.209 4 N -0.124 5.124 5 N -0.099 5.099 6 C -0.089 4.089 7 C -0.304 4.304 8 C 0.373 3.627 9 O -0.458 6.458 10 N -0.350 5.350 11 C 0.040 3.960 12 H 0.067 0.933 13 C -0.209 4.209 14 C -0.159 4.159 15 C 0.059 3.941 16 H 0.062 0.938 17 C -0.217 4.217 18 N -0.392 5.392 19 C -0.340 4.340 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.641 5.641 23 Si 0.776 3.224 24 H -0.202 1.202 25 H -0.232 1.232 26 H -0.180 1.180 27 C 0.008 3.992 28 Cl 0.048 6.952 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.250 0.750 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.194 0.806 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.196 24.907 -1.466 25.967 hybrid contribution 0.651 -2.033 -0.542 2.203 sum 7.847 22.873 -2.007 24.265 Atomic orbital electron populations 1.22132 0.91585 1.02753 1.04951 1.21986 0.97056 0.95311 0.82363 1.22094 1.01485 0.92384 1.04907 1.49225 1.36605 1.19041 1.07516 1.77188 1.23599 1.23589 0.85525 1.24514 0.92670 0.90042 1.01721 1.20025 1.14458 1.04628 0.91263 1.17342 0.79325 0.83015 0.83057 1.90787 1.50476 1.47947 1.56550 1.45536 1.53032 1.30788 1.05685 1.20899 0.90901 0.88292 0.95896 0.93347 1.22087 0.94400 1.02835 1.01592 1.22144 0.95650 1.03021 0.95036 1.20525 0.95798 0.86865 0.90919 0.93805 1.22285 0.99981 1.01707 0.97692 1.42834 1.10224 1.25549 1.60588 1.18960 0.90411 1.03209 1.21433 0.92910 1.25398 0.99625 1.00176 1.00735 1.69883 1.28519 1.25839 1.39872 0.85506 0.81094 0.79272 0.76547 1.20157 1.23242 1.17981 1.22252 0.95860 0.90070 0.91054 1.98443 1.85275 1.73607 1.37909 0.87255 0.91316 0.93454 0.87089 0.91318 0.92480 0.87416 0.75050 0.75224 0.90923 0.94471 0.89898 0.89637 0.86870 0.93072 0.90129 0.95730 0.80572 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.44 71.98 0.68 -1.63 16 2 C 0.13 2.19 3.66 44.99 0.16 2.36 16 3 C -0.15 -1.80 9.45 71.98 0.68 -1.12 16 4 N -0.34 -8.11 3.25 -315.65 -1.03 -9.13 16 5 N -0.28 -6.57 12.33 -56.26 -0.69 -7.27 16 6 C 0.10 2.17 11.50 85.67 0.99 3.15 16 7 C -0.29 -8.50 6.13 -20.12 -0.12 -8.62 16 8 C 0.59 20.15 7.77 86.63 0.67 20.82 16 9 O -0.58 -25.01 15.31 -4.10 -0.06 -25.07 16 10 N -0.70 -19.10 4.44 -445.92 -1.98 -21.08 16 11 C 0.14 4.20 2.52 44.99 0.11 4.31 16 12 H 0.05 1.95 7.05 -2.38 -0.02 1.93 16 13 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 14 C -0.12 -2.93 4.29 30.60 0.13 -2.80 16 15 C 0.17 5.67 2.84 44.99 0.13 5.80 16 16 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 17 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 18 N -0.75 -34.52 4.30 -322.94 -1.39 -35.91 16 19 C -0.21 -12.15 10.41 84.03 0.87 -11.28 16 20 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 21 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 22 N -0.99 -66.42 13.97 21.65 0.30 -66.12 16 23 Si 0.95 48.49 27.74 68.60 1.90 50.39 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 26 H -0.26 -12.01 6.52 99.48 0.65 -11.37 16 27 C 0.17 4.86 7.53 84.32 0.63 5.49 16 28 Cl 0.02 0.57 27.00 -2.72 -0.07 0.50 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.69 7.23 -2.39 -0.02 1.67 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.23 3.01 7.50 -2.91 -0.02 2.99 16 37 H 0.41 7.92 7.55 -92.71 -0.70 7.22 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.36 16.39 5.66 -92.71 -0.52 15.87 16 47 H 0.25 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -83.82 401.99 3.45 -80.37 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.30 Total: 27.52 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.77 Total: 5.79 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -4.78 Total: -139.51 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.06 Total: -25.07 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.90 Total: 50.39 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.07 Total: 0.50 kcal Total: -83.82 3.45 -80.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135091861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.550 kcal (2) G-P(sol) polarization free energy of solvation -83.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds