Wall clock time and date at job start Wed Apr 1 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47321 * 2 1 4 4 N 1.39932 * 125.74883 * 270.00325 * 3 2 1 5 5 C 1.30411 * 108.95907 * 179.73577 * 4 3 2 6 6 C 1.50699 * 125.97915 * 180.24030 * 5 4 3 7 7 C 1.41342 * 108.04896 * 0.40654 * 5 4 3 8 8 C 1.47295 * 126.43916 * 179.85515 * 7 5 4 9 9 O 1.21616 * 120.00301 * 274.56735 * 8 7 5 10 10 N 1.34777 * 119.99908 * 94.56507 * 8 7 5 11 11 C 1.46503 * 120.00013 * 185.29110 * 10 8 7 12 12 H 1.08994 * 109.47076 * 326.91993 * 11 10 8 13 13 C 1.52996 * 109.47154 * 86.92063 * 11 10 8 14 14 C 1.53004 * 109.47235 * 206.91759 * 11 10 8 15 15 C 1.52995 * 109.47154 * 174.13379 * 14 11 10 16 16 H 1.08998 * 109.47087 * 54.80256 * 15 14 11 17 17 C 1.52996 * 109.47089 * 174.79909 * 15 14 11 18 18 N 1.46502 * 109.47319 * 294.80237 * 15 14 11 19 19 C 1.36936 * 119.99822 * 157.30890 * 18 15 14 20 20 H 1.07994 * 120.00375 * 354.44773 * 19 18 15 21 21 C 1.38814 * 119.99791 * 174.45015 * 19 18 15 22 22 N 1.31619 * 119.99934 * 359.71777 * 21 19 18 23 23 Si 1.86797 * 119.99976 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47131 * 179.72294 * 23 21 19 25 25 H 1.48501 * 109.46801 * 299.71981 * 23 21 19 26 26 H 1.48494 * 109.47306 * 59.72274 * 23 21 19 27 27 C 1.34348 * 125.74984 * 89.99845 * 3 2 1 28 28 Cl 1.73592 * 126.32005 * 359.96763 * 27 3 2 29 29 H 1.08992 * 109.46868 * 299.99902 * 1 2 3 30 30 H 1.09004 * 109.46759 * 60.00076 * 1 2 3 31 31 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46921 * 239.99749 * 2 1 3 33 33 H 1.08997 * 109.47134 * 120.00462 * 2 1 3 34 34 H 1.09004 * 109.46964 * 270.19716 * 6 5 4 35 35 H 1.09005 * 109.46683 * 30.19401 * 6 5 4 36 36 H 1.08994 * 109.47363 * 150.19277 * 6 5 4 37 37 H 0.96998 * 120.00570 * 5.28885 * 10 8 7 38 38 H 1.09007 * 109.47513 * 59.99858 * 13 11 10 39 39 H 1.08997 * 109.47532 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.47473 * 299.99788 * 13 11 10 41 41 H 1.09004 * 109.46747 * 54.13770 * 14 11 10 42 42 H 1.09004 * 109.47191 * 294.13771 * 14 11 10 43 43 H 1.09004 * 109.47281 * 60.00095 * 17 15 14 44 44 H 1.09000 * 109.47066 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.47597 * 300.00232 * 17 15 14 46 46 H 0.96997 * 119.99991 * 337.30680 * 18 15 14 47 47 H 0.97001 * 120.00322 * 0.28605 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1519 -1.1357 5 6 2.7017 3.3309 -0.7590 6 6 3.0949 4.4645 -1.6708 7 6 2.7175 3.3583 0.6541 8 6 3.1184 4.4936 1.5027 9 8 4.2905 4.6612 1.7802 10 7 2.1862 5.3466 1.9716 11 6 2.5941 6.5395 2.7179 12 1 3.4961 6.3199 3.2891 13 6 2.8755 7.6816 1.7396 14 6 1.4727 6.9514 3.6738 15 6 1.9526 8.1058 4.5557 16 1 2.3111 8.9197 3.9256 17 6 0.7926 8.6033 5.4203 18 7 3.0410 7.6409 5.4192 19 6 3.9308 8.5401 5.9434 20 1 3.8855 9.5784 5.6498 21 6 4.8910 8.1171 6.8521 22 7 4.9427 6.8527 7.2141 23 14 6.1044 9.3438 7.5677 24 1 7.0150 8.6466 8.5112 25 1 6.8993 9.9513 6.4703 26 1 5.3636 10.4086 8.2906 27 6 2.2800 2.1212 1.0903 28 17 2.1011 1.6176 2.7419 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.1596 4.3980 -1.8948 35 1 2.5240 4.4004 -2.5971 36 1 2.8856 5.4149 -1.1800 37 1 1.2452 5.1708 1.8151 38 1 1.9735 7.9013 1.1682 39 1 3.1794 8.5690 2.2947 40 1 3.6745 7.3883 1.0585 41 1 1.2008 6.1030 4.3019 42 1 0.6037 7.2707 3.0983 43 1 0.4340 7.7895 6.0505 44 1 1.1346 9.4255 6.0490 45 1 -0.0172 8.9493 4.7779 46 1 3.1312 6.6962 5.6196 47 1 4.3124 6.2157 6.8428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146461386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:06 Heat of formation + Delta-G solvation = 31.482786 kcal Electronic energy + Delta-G solvation = -28077.771672 eV Core-core repulsion = 24130.198858 eV Total energy + Delta-G solvation = -3947.572814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.75349 -39.31526 -37.26704 -36.96445 -35.27204 -34.61937 -32.46464 -31.72144 -30.96783 -29.58874 -28.23826 -28.00985 -26.35369 -24.48873 -23.42490 -22.64957 -21.33342 -20.61827 -20.06649 -19.57001 -17.94565 -17.31789 -16.72435 -16.08495 -15.63307 -15.37950 -14.88983 -14.69821 -14.48267 -14.29835 -13.87933 -13.63196 -13.54948 -13.33598 -13.12056 -12.97074 -12.74945 -12.71952 -12.62093 -12.19724 -12.10274 -11.96081 -11.92551 -11.76896 -11.73033 -11.25083 -11.04224 -10.86298 -10.69832 -10.56617 -10.35896 -10.13673 -9.89280 -9.71712 -9.56446 -9.07296 -8.89654 -8.85547 -8.79022 -6.93688 -5.99886 -2.99916 1.02854 1.15133 2.06975 2.13912 2.69268 3.39615 3.57506 3.61673 3.78781 3.98052 4.38541 4.43167 4.66280 4.69369 4.75258 4.92485 5.07870 5.11854 5.17004 5.21507 5.32792 5.37871 5.50691 5.54789 5.57058 5.60658 5.69952 5.72101 5.81042 5.98758 6.04123 6.07685 6.16192 6.26024 6.28104 6.40151 6.46981 6.50169 6.66061 6.81799 6.90184 7.06611 7.15917 7.69209 7.90453 8.41261 8.85568 9.32731 10.18859 10.34121 11.48368 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002777 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.713646 B =10080.105253 C =10408.679255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.351 5.351 4 N -0.275 5.275 5 C 0.121 3.879 6 C -0.077 4.077 7 C -0.254 4.254 8 C 0.593 3.407 9 O -0.518 6.518 10 N -0.715 5.715 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.157 4.157 14 C -0.129 4.129 15 C 0.179 3.821 16 H 0.051 0.949 17 C -0.163 4.163 18 N -0.734 5.734 19 C -0.328 4.328 20 H 0.063 0.937 21 C -0.045 4.045 22 N -0.943 5.943 23 Si 1.077 2.923 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.297 1.297 27 C 0.156 3.844 28 Cl 0.016 6.984 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.395 0.605 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.366 0.634 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -12.162 -18.495 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.133 5.133 4 N -0.098 5.098 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.270 4.270 8 C 0.376 3.624 9 O -0.393 6.393 10 N -0.366 5.366 11 C 0.037 3.963 12 H 0.123 0.877 13 C -0.216 4.216 14 C -0.168 4.168 15 C 0.069 3.931 16 H 0.069 0.931 17 C -0.224 4.224 18 N -0.377 5.377 19 C -0.459 4.459 20 H 0.081 0.919 21 C -0.242 4.242 22 N -0.588 5.588 23 Si 0.909 3.091 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.224 1.224 27 C -0.001 4.001 28 Cl 0.044 6.956 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.228 0.772 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.199 0.801 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.872 -12.562 -18.133 24.593 hybrid contribution -1.740 -0.297 -0.080 1.767 sum -12.612 -12.860 -18.213 25.615 Atomic orbital electron populations 1.22191 0.93471 1.03606 1.03571 1.21901 0.95889 0.76944 1.05277 1.48573 1.50259 1.12548 1.01942 1.77240 1.23438 1.03806 1.05274 1.22279 0.96470 0.94178 0.91617 1.20301 1.02728 0.93115 0.97412 1.19925 1.17759 0.95080 0.94216 1.17092 0.85641 0.80829 0.78839 1.90861 1.17858 1.73552 1.57000 1.46140 1.09189 1.24840 1.56408 1.21087 0.99950 0.83212 0.92015 0.87651 1.22159 1.00909 0.99095 0.99391 1.22123 0.96968 1.00102 0.97600 1.20166 0.88477 0.93635 0.90794 0.93067 1.22416 0.98358 1.01263 1.00321 1.42457 1.30609 1.06414 1.58231 1.19971 1.11125 0.91768 1.23030 0.91934 1.25706 1.00610 1.00331 0.97588 1.70864 1.39535 1.02146 1.46280 0.83279 0.75854 0.73945 0.76055 1.21154 1.22298 1.22436 1.22030 1.02099 0.92057 0.83936 1.98461 1.95902 1.90928 1.10312 0.91708 0.91275 0.89948 0.87740 0.88444 0.89519 0.90105 0.89918 0.77214 0.93208 0.90661 0.92791 0.91784 0.91865 0.93765 0.92658 0.94578 0.80075 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.12 0.81 6.97 -4.04 -0.03 0.78 16 3 N -0.35 -3.77 3.58 -57.57 -0.21 -3.98 16 4 N -0.27 -3.30 12.49 33.90 0.42 -2.87 16 5 C 0.12 1.48 7.26 -82.02 -0.60 0.89 16 6 C -0.08 -0.73 10.28 36.01 0.37 -0.36 16 7 C -0.25 -3.51 5.89 -105.02 -0.62 -4.13 16 8 C 0.59 9.60 7.18 -12.58 -0.09 9.51 16 9 O -0.52 -10.87 16.71 5.26 0.09 -10.78 16 10 N -0.72 -10.06 5.05 -54.92 -0.28 -10.33 16 11 C 0.14 2.31 2.67 -67.93 -0.18 2.12 16 12 H 0.11 2.26 6.90 -51.93 -0.36 1.90 16 13 C -0.16 -2.36 9.28 37.16 0.34 -2.01 16 14 C -0.13 -2.01 4.40 -26.73 -0.12 -2.13 16 15 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 16 H 0.05 1.01 6.33 -51.93 -0.33 0.68 16 17 C -0.16 -2.95 9.46 37.16 0.35 -2.59 16 18 N -0.73 -18.16 4.50 -53.43 -0.24 -18.40 16 19 C -0.33 -9.21 9.91 -15.06 -0.15 -9.36 16 20 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 21 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 22 N -0.94 -29.83 13.70 55.49 0.76 -29.07 16 23 Si 1.08 26.58 29.92 -169.99 -5.09 21.49 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.30 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.16 1.93 7.54 -16.43 -0.12 1.80 16 28 Cl 0.02 0.18 28.56 -51.86 -1.48 -1.30 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.10 0.55 7.77 -51.93 -0.40 0.14 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 37 H 0.39 4.44 8.61 -40.82 -0.35 4.09 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.23 6.49 -51.93 -0.34 0.89 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.37 9.57 6.63 -40.82 -0.27 9.30 16 47 H 0.26 8.00 6.79 -40.82 -0.28 7.72 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -35.46 406.35 -8.08 -43.54 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.44 Total: 9.70 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.74 Total: -4.14 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.46 Total: -64.65 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.09 Total: 21.49 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.48 Total: -1.30 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.46 -8.08 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146461386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.027 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds