Wall clock time and date at job start Wed Apr 1 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47321 * 2 1 4 4 N 1.39932 * 125.74883 * 270.00325 * 3 2 1 5 5 C 1.30411 * 108.95907 * 179.73577 * 4 3 2 6 6 C 1.50699 * 125.97915 * 180.24030 * 5 4 3 7 7 C 1.41342 * 108.04896 * 0.40654 * 5 4 3 8 8 C 1.47295 * 126.43916 * 179.85515 * 7 5 4 9 9 O 1.21616 * 120.00301 * 274.56735 * 8 7 5 10 10 N 1.34777 * 119.99908 * 94.56507 * 8 7 5 11 11 C 1.46503 * 120.00013 * 185.29110 * 10 8 7 12 12 H 1.08994 * 109.47076 * 326.91993 * 11 10 8 13 13 C 1.52996 * 109.47154 * 86.92063 * 11 10 8 14 14 C 1.53004 * 109.47235 * 206.91759 * 11 10 8 15 15 C 1.52995 * 109.47154 * 174.13379 * 14 11 10 16 16 H 1.08998 * 109.47087 * 54.80256 * 15 14 11 17 17 C 1.52996 * 109.47089 * 174.79909 * 15 14 11 18 18 N 1.46502 * 109.47319 * 294.80237 * 15 14 11 19 19 C 1.36936 * 119.99822 * 157.30890 * 18 15 14 20 20 H 1.07994 * 120.00375 * 354.44773 * 19 18 15 21 21 C 1.38814 * 119.99791 * 174.45015 * 19 18 15 22 22 N 1.31619 * 119.99934 * 359.71777 * 21 19 18 23 23 Si 1.86797 * 119.99976 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47131 * 179.72294 * 23 21 19 25 25 H 1.48501 * 109.46801 * 299.71981 * 23 21 19 26 26 H 1.48494 * 109.47306 * 59.72274 * 23 21 19 27 27 C 1.34348 * 125.74984 * 89.99845 * 3 2 1 28 28 Cl 1.73592 * 126.32005 * 359.96763 * 27 3 2 29 29 H 1.08992 * 109.46868 * 299.99902 * 1 2 3 30 30 H 1.09004 * 109.46759 * 60.00076 * 1 2 3 31 31 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46921 * 239.99749 * 2 1 3 33 33 H 1.08997 * 109.47134 * 120.00462 * 2 1 3 34 34 H 1.09004 * 109.46964 * 270.19716 * 6 5 4 35 35 H 1.09005 * 109.46683 * 30.19401 * 6 5 4 36 36 H 1.08994 * 109.47363 * 150.19277 * 6 5 4 37 37 H 0.96998 * 120.00570 * 5.28885 * 10 8 7 38 38 H 1.09007 * 109.47513 * 59.99858 * 13 11 10 39 39 H 1.08997 * 109.47532 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.47473 * 299.99788 * 13 11 10 41 41 H 1.09004 * 109.46747 * 54.13770 * 14 11 10 42 42 H 1.09004 * 109.47191 * 294.13771 * 14 11 10 43 43 H 1.09004 * 109.47281 * 60.00095 * 17 15 14 44 44 H 1.09000 * 109.47066 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.47597 * 300.00232 * 17 15 14 46 46 H 0.96997 * 119.99991 * 337.30680 * 18 15 14 47 47 H 0.97001 * 120.00322 * 0.28605 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1519 -1.1357 5 6 2.7017 3.3309 -0.7590 6 6 3.0949 4.4645 -1.6708 7 6 2.7175 3.3583 0.6541 8 6 3.1184 4.4936 1.5027 9 8 4.2905 4.6612 1.7802 10 7 2.1862 5.3466 1.9716 11 6 2.5941 6.5395 2.7179 12 1 3.4961 6.3199 3.2891 13 6 2.8755 7.6816 1.7396 14 6 1.4727 6.9514 3.6738 15 6 1.9526 8.1058 4.5557 16 1 2.3111 8.9197 3.9256 17 6 0.7926 8.6033 5.4203 18 7 3.0410 7.6409 5.4192 19 6 3.9308 8.5401 5.9434 20 1 3.8855 9.5784 5.6498 21 6 4.8910 8.1171 6.8521 22 7 4.9427 6.8527 7.2141 23 14 6.1044 9.3438 7.5677 24 1 7.0150 8.6466 8.5112 25 1 6.8993 9.9513 6.4703 26 1 5.3636 10.4086 8.2906 27 6 2.2800 2.1212 1.0903 28 17 2.1011 1.6176 2.7419 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.1596 4.3980 -1.8948 35 1 2.5240 4.4004 -2.5971 36 1 2.8856 5.4149 -1.1800 37 1 1.2452 5.1708 1.8151 38 1 1.9735 7.9013 1.1682 39 1 3.1794 8.5690 2.2947 40 1 3.6745 7.3883 1.0585 41 1 1.2008 6.1030 4.3019 42 1 0.6037 7.2707 3.0983 43 1 0.4340 7.7895 6.0505 44 1 1.1346 9.4255 6.0490 45 1 -0.0172 8.9493 4.7779 46 1 3.1312 6.6962 5.6196 47 1 4.3124 6.2157 6.8428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146461386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:05 Heat of formation + Delta-G solvation = 7.259578 kcal Electronic energy + Delta-G solvation = -28078.822069 eV Core-core repulsion = 24130.198858 eV Total energy + Delta-G solvation = -3948.623212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68288 -40.61868 -38.51303 -38.21653 -36.27420 -35.99330 -34.29840 -32.46266 -32.23566 -30.76998 -30.04548 -28.75693 -27.69110 -25.66739 -25.24756 -23.62035 -22.51950 -21.67308 -21.34584 -20.86899 -19.44698 -18.91758 -17.76557 -17.21784 -16.70397 -16.48188 -16.37504 -16.21754 -15.75307 -15.51434 -15.21909 -14.97506 -14.72403 -14.37351 -14.29988 -14.06926 -13.76375 -13.69548 -13.48615 -13.43167 -13.19795 -13.04076 -12.94157 -12.86172 -12.73348 -12.58264 -12.39134 -12.31956 -12.25960 -11.92573 -11.89358 -11.79191 -11.64374 -11.22978 -11.01874 -10.87531 -10.42327 -10.14181 -9.87470 -9.03574 -8.31967 -5.24451 0.08700 0.21216 1.11031 1.34824 1.44361 1.57606 1.68456 1.83739 2.20219 2.75054 3.17637 3.47110 3.63788 3.73717 3.84401 3.94491 3.94688 3.98530 4.07007 4.17668 4.23345 4.27102 4.49527 4.55811 4.62897 4.66564 4.68283 4.69480 4.72481 4.81394 4.90738 4.93947 4.96281 5.03027 5.13377 5.17018 5.22020 5.26462 5.44601 5.48189 5.50076 5.57443 5.69039 6.25310 6.50709 6.55338 7.17600 7.19855 8.07834 8.20309 9.19882 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002777 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.713646 B =10080.105253 C =10408.679255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.341 5.341 4 N -0.281 5.281 5 C 0.118 3.882 6 C -0.077 4.077 7 C -0.280 4.280 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.697 5.697 11 C 0.147 3.853 12 H 0.048 0.952 13 C -0.149 4.149 14 C -0.115 4.115 15 C 0.170 3.830 16 H 0.051 0.949 17 C -0.154 4.154 18 N -0.746 5.746 19 C -0.317 4.317 20 H 0.066 0.934 21 C -0.111 4.111 22 N -0.979 5.979 23 Si 1.123 2.877 24 H -0.297 1.297 25 H -0.280 1.280 26 H -0.276 1.276 27 C 0.155 3.845 28 Cl 0.019 6.981 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.413 0.587 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.354 0.646 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 -11.966 -20.294 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.123 5.123 4 N -0.104 5.104 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.296 4.296 8 C 0.383 3.617 9 O -0.454 6.454 10 N -0.348 5.348 11 C 0.042 3.958 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.154 4.154 15 C 0.062 3.938 16 H 0.069 0.931 17 C -0.214 4.214 18 N -0.388 5.388 19 C -0.449 4.449 20 H 0.084 0.916 21 C -0.302 4.302 22 N -0.628 5.628 23 Si 0.949 3.051 24 H -0.224 1.224 25 H -0.207 1.207 26 H -0.202 1.202 27 C -0.003 4.003 28 Cl 0.047 6.953 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.249 0.751 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.186 0.814 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.311 -12.352 -19.988 27.005 hybrid contribution -1.115 -0.418 0.402 1.257 sum -14.426 -12.771 -19.586 27.474 Atomic orbital electron populations 1.22159 0.92117 1.05084 1.02758 1.22351 0.96995 0.75077 1.06687 1.48947 1.48925 1.13403 1.01063 1.77218 1.23675 1.03775 1.05758 1.22629 0.96108 0.94880 0.91174 1.20402 1.03072 0.92162 0.97893 1.19782 1.20024 0.94985 0.94802 1.17393 0.84867 0.81160 0.78239 1.90834 1.20299 1.75075 1.59235 1.45919 1.09922 1.23772 1.55166 1.20810 0.98167 0.84432 0.92348 0.93335 1.22073 1.02285 0.97544 0.98833 1.22002 0.97791 0.98532 0.97044 1.20469 0.87568 0.95059 0.90670 0.93096 1.22272 0.98728 1.00159 1.00252 1.42685 1.31848 1.05459 1.58853 1.20315 1.10763 0.92293 1.21497 0.91576 1.27078 1.03068 1.01028 0.98987 1.70980 1.40504 1.03151 1.48190 0.82686 0.74153 0.72549 0.75752 1.22350 1.20667 1.20186 1.22041 1.01795 0.91992 0.84480 1.98462 1.95853 1.90850 1.10151 0.92510 0.91995 0.87330 0.86162 0.87263 0.89499 0.87849 0.89904 0.75086 0.89435 0.92186 0.93924 0.92192 0.87293 0.94307 0.94999 0.90298 0.81403 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.24 71.98 0.74 -0.65 16 2 C 0.11 1.24 6.97 86.38 0.60 1.84 16 3 N -0.34 -6.87 3.58 -336.06 -1.20 -8.08 16 4 N -0.28 -6.35 12.49 -46.66 -0.58 -6.93 16 5 C 0.12 2.79 7.26 43.53 0.32 3.11 16 6 C -0.08 -1.36 10.28 71.24 0.73 -0.63 16 7 C -0.28 -7.67 5.89 -20.12 -0.12 -7.79 16 8 C 0.60 19.72 7.18 86.63 0.62 20.35 16 9 O -0.58 -25.39 16.71 -4.08 -0.07 -25.46 16 10 N -0.70 -19.19 5.05 -445.93 -2.25 -21.45 16 11 C 0.15 4.79 2.67 44.99 0.12 4.91 16 12 H 0.05 2.19 6.90 -2.39 -0.02 2.17 16 13 C -0.15 -4.31 9.28 71.98 0.67 -3.64 16 14 C -0.12 -3.37 4.40 30.59 0.13 -3.24 16 15 C 0.17 6.41 2.77 44.99 0.12 6.53 16 16 H 0.05 1.94 6.33 -2.39 -0.02 1.92 16 17 C -0.15 -5.24 9.46 71.98 0.68 -4.56 16 18 N -0.75 -37.69 4.50 -322.96 -1.45 -39.14 16 19 C -0.32 -18.06 9.91 84.03 0.83 -17.23 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 21 C -0.11 -6.67 5.50 84.86 0.47 -6.20 16 22 N -0.98 -64.18 13.70 21.65 0.30 -63.88 16 23 Si 1.12 54.25 29.92 68.60 2.05 56.30 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.16 3.75 7.54 84.32 0.64 4.39 16 28 Cl 0.02 0.43 28.56 -2.72 -0.08 0.35 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 1.02 7.77 -2.39 -0.02 1.00 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 37 H 0.41 8.47 8.61 -92.71 -0.80 7.68 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 1.91 6.49 -2.39 -0.02 1.90 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.35 19.34 6.63 -92.71 -0.61 18.73 16 47 H 0.24 15.87 6.79 -92.71 -0.63 15.24 16 Total: -1.00 -80.94 406.35 2.98 -77.95 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.28 Total: 33.16 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.55 Total: -2.83 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -5.20 Total: -139.48 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 2.05 Total: 56.30 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -80.94 2.98 -77.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146461386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.213 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds