Wall clock time and date at job start Wed Apr 1 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47207 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47316 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99844 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00300 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99745 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99650 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99950 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46865 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47008 * 119.99881 * 13 11 9 16 16 H 1.48498 * 109.46880 * 239.99783 * 13 11 9 17 17 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 18 18 C 1.34777 * 120.00271 * 84.99619 * 17 2 1 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 2 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 N 1.46499 * 109.46840 * 180.02562 * 21 20 18 23 23 C 1.35047 * 126.03732 * 124.99681 * 22 21 20 24 24 C 1.35374 * 107.72715 * 179.97438 * 23 22 21 25 25 Cl 1.73606 * 126.04495 * 179.97438 * 24 23 22 26 26 C 1.39930 * 107.90732 * 0.02562 * 24 23 22 27 27 N 1.30848 * 108.21317 * 359.75705 * 26 24 23 28 28 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 31 31 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 32 32 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 33 33 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 34 34 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 35 35 H 1.08996 * 109.47019 * 299.99700 * 6 5 4 36 36 H 1.08994 * 109.47383 * 60.00112 * 6 5 4 37 37 H 1.09004 * 109.47020 * 300.00191 * 7 6 5 38 38 H 1.09004 * 109.46979 * 59.99452 * 7 6 5 39 39 H 0.96999 * 119.99940 * 0.02562 * 8 7 6 40 40 H 0.97006 * 119.99630 * 179.97438 * 12 11 9 41 41 H 0.97005 * 120.00266 * 265.00202 * 17 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 43 43 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 44 44 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 45 45 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 46 46 H 1.07996 * 126.13783 * 359.94856 * 23 22 21 47 47 H 1.08004 * 125.89055 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5998 -1.2276 2.6267 8 7 6.0881 -1.9182 3.8228 9 6 7.4302 -1.9545 4.0925 10 1 8.1287 -1.4744 3.4231 11 6 7.8930 -2.6093 5.2256 12 7 7.0417 -3.1948 6.0411 13 14 9.7238 -2.6595 5.5931 14 1 10.4622 -1.9324 4.5295 15 1 9.9831 -2.0149 6.9056 16 1 10.1814 -4.0715 5.6361 17 7 2.0183 -0.6906 -1.1961 18 6 2.1469 -0.0183 -2.3572 19 8 1.8589 1.1585 -2.4115 20 6 2.6487 -0.7289 -3.5878 21 6 2.7008 0.2544 -4.7588 22 7 3.1880 -0.4366 -5.9552 23 6 2.5607 -0.4951 -7.1497 24 6 3.3356 -1.2239 -7.9870 25 17 2.9787 -1.5966 -9.6446 26 6 4.4746 -1.6246 -7.2797 27 7 4.3892 -1.1491 -6.0637 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2616 2.1369 32 1 1.7516 -1.7714 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3572 35 1 3.6403 -0.8759 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 6.0340 -1.6870 1.7387 38 1 5.8885 -0.1774 2.6705 39 1 5.4608 -2.3497 4.4238 40 1 7.3651 -3.6527 6.8327 41 1 2.2490 -1.6318 -1.1526 42 1 1.9758 -1.5507 -3.8326 43 1 3.6478 -1.1215 -3.3986 44 1 1.7018 0.6472 -4.9481 45 1 3.3739 1.0759 -4.5138 46 1 1.6111 -0.0421 -7.3932 47 1 5.2860 -2.2203 -7.6712 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176728310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:24 Heat of formation + Delta-G solvation = 21.550048 kcal Electronic energy + Delta-G solvation = -25919.571199 eV Core-core repulsion = 21971.567669 eV Total energy + Delta-G solvation = -3948.003530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75470 -40.24677 -37.22385 -36.83550 -35.34894 -34.69458 -33.32740 -31.89362 -30.95548 -30.35331 -29.57875 -27.49273 -25.34209 -24.18581 -22.35404 -21.71115 -21.54492 -20.91364 -20.69535 -20.64280 -18.23068 -17.11022 -16.98586 -16.70921 -16.23715 -15.59530 -15.15544 -14.94120 -14.81869 -14.67789 -14.24558 -13.94551 -13.81844 -13.71464 -13.45578 -13.18344 -13.04168 -12.98375 -12.85437 -12.45086 -12.19550 -11.92762 -11.82315 -11.74948 -11.51778 -11.30757 -11.03985 -10.91186 -10.83152 -10.74400 -10.43327 -10.35002 -10.26081 -10.02940 -9.97377 -9.68036 -9.36503 -8.89941 -8.86505 -6.90529 -5.75878 -3.04188 1.23571 1.46434 2.12706 2.25210 2.29375 2.86320 3.43738 3.49321 3.51720 3.96630 4.14707 4.24374 4.36802 4.46846 4.57204 4.64430 4.75089 4.84423 4.89848 4.91767 5.09278 5.18537 5.19322 5.27847 5.34168 5.38521 5.51898 5.57528 5.64119 5.73522 5.82694 5.87780 5.89295 6.04600 6.14964 6.27541 6.29718 6.30505 6.36774 6.44291 6.88195 6.92081 7.04883 7.13933 7.71537 7.83952 8.43542 9.54422 10.13500 10.48019 11.47274 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.001645 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.053090 B =17020.543356 C =19298.769395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.718 5.718 18 C 0.521 3.479 19 O -0.544 6.544 20 C -0.156 4.156 21 C 0.152 3.848 22 N -0.364 5.364 23 C 0.075 3.925 24 C -0.191 4.191 25 Cl -0.044 7.044 26 C 0.065 3.935 27 N -0.278 5.278 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.403 0.597 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.184 0.816 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 4.910 -28.310 33.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.370 5.370 18 C 0.307 3.693 19 O -0.422 6.422 20 C -0.197 4.197 21 C 0.031 3.969 22 N -0.146 5.146 23 C -0.073 4.073 24 C -0.229 4.229 25 Cl -0.016 7.016 26 C -0.122 4.122 27 N -0.098 5.098 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.238 0.762 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.201 0.799 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.544 5.930 -27.202 32.386 hybrid contribution 0.492 -0.860 -0.443 1.085 sum -16.053 5.071 -27.645 32.368 Atomic orbital electron populations 1.22173 0.95286 1.02114 1.02538 1.21085 0.93775 0.97772 0.83783 0.89215 1.21948 0.96947 1.00958 0.96687 1.21520 0.93876 1.01121 0.98704 1.21726 0.97296 1.00256 0.97078 1.20650 0.90971 0.95343 0.90585 1.42389 1.05348 1.64968 1.25174 1.19310 0.83931 1.28317 1.05444 0.91156 1.24752 0.97754 1.00958 0.97708 1.69675 1.32684 1.40820 1.15155 0.86106 0.85054 0.77225 0.77771 1.20550 1.21847 1.21859 1.46105 1.66909 1.14304 1.09657 1.20246 0.77429 0.87158 0.84487 1.90730 1.50449 1.15828 1.85192 1.21906 1.05324 0.99718 0.92763 1.21521 1.01575 0.93520 0.80299 1.48599 1.15420 1.40928 1.09632 1.22300 0.99366 0.99972 0.85658 1.20802 1.00096 1.12690 0.89334 1.98336 1.94693 1.93834 1.14742 1.23941 0.98103 0.99705 0.90465 1.77535 1.00846 1.12342 1.19123 0.92463 0.91408 0.92315 0.90119 0.91300 0.92149 0.91969 0.92037 0.92128 0.96627 0.96579 0.78362 0.93602 0.76249 0.88181 0.86982 0.87377 0.88178 0.79928 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.13 -1.15 4.75 -26.73 -0.13 -1.27 16 5 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.95 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.09 16 8 N -0.73 -19.14 5.60 -59.91 -0.34 -19.48 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 N -0.72 -5.46 4.53 -53.81 -0.24 -5.71 16 18 C 0.52 4.44 7.79 -10.98 -0.09 4.35 16 19 O -0.54 -6.42 15.64 5.56 0.09 -6.34 16 20 C -0.16 -0.97 5.89 -27.88 -0.16 -1.13 16 21 C 0.15 0.97 5.80 -4.04 -0.02 0.94 16 22 N -0.36 -2.75 3.68 -61.33 -0.23 -2.98 16 23 C 0.08 0.48 11.43 -17.16 -0.20 0.29 16 24 C -0.19 -1.41 6.65 -39.97 -0.27 -1.68 16 25 Cl -0.04 -0.30 29.30 -51.86 -1.52 -1.82 16 26 C 0.06 0.51 12.02 -17.34 -0.21 0.30 16 27 N -0.28 -2.61 12.42 30.64 0.38 -2.23 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.40 2.35 8.60 -40.82 -0.35 2.00 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 0.52 8.03 -51.93 -0.42 0.11 16 45 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 46 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 47 H 0.19 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -34.71 411.37 -9.16 -43.87 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.76 Total: 4.84 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.44 Total: -6.13 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.30 Total: -58.31 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: 0.09 Total: -6.34 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.82 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.71 -9.16 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176728310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.424 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds