Wall clock time and date at job start Wed Apr 1 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47207 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47316 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99844 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00300 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99745 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99650 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99950 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46865 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47008 * 119.99881 * 13 11 9 16 16 H 1.48498 * 109.46880 * 239.99783 * 13 11 9 17 17 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 18 18 C 1.34777 * 120.00271 * 84.99619 * 17 2 1 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 2 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 N 1.46499 * 109.46840 * 180.02562 * 21 20 18 23 23 C 1.35047 * 126.03732 * 124.99681 * 22 21 20 24 24 C 1.35374 * 107.72715 * 179.97438 * 23 22 21 25 25 Cl 1.73606 * 126.04495 * 179.97438 * 24 23 22 26 26 C 1.39930 * 107.90732 * 0.02562 * 24 23 22 27 27 N 1.30848 * 108.21317 * 359.75705 * 26 24 23 28 28 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 31 31 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 32 32 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 33 33 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 34 34 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 35 35 H 1.08996 * 109.47019 * 299.99700 * 6 5 4 36 36 H 1.08994 * 109.47383 * 60.00112 * 6 5 4 37 37 H 1.09004 * 109.47020 * 300.00191 * 7 6 5 38 38 H 1.09004 * 109.46979 * 59.99452 * 7 6 5 39 39 H 0.96999 * 119.99940 * 0.02562 * 8 7 6 40 40 H 0.97006 * 119.99630 * 179.97438 * 12 11 9 41 41 H 0.97005 * 120.00266 * 265.00202 * 17 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 43 43 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 44 44 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 45 45 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 46 46 H 1.07996 * 126.13783 * 359.94856 * 23 22 21 47 47 H 1.08004 * 125.89055 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5998 -1.2276 2.6267 8 7 6.0881 -1.9182 3.8228 9 6 7.4302 -1.9545 4.0925 10 1 8.1287 -1.4744 3.4231 11 6 7.8930 -2.6093 5.2256 12 7 7.0417 -3.1948 6.0411 13 14 9.7238 -2.6595 5.5931 14 1 10.4622 -1.9324 4.5295 15 1 9.9831 -2.0149 6.9056 16 1 10.1814 -4.0715 5.6361 17 7 2.0183 -0.6906 -1.1961 18 6 2.1469 -0.0183 -2.3572 19 8 1.8589 1.1585 -2.4115 20 6 2.6487 -0.7289 -3.5878 21 6 2.7008 0.2544 -4.7588 22 7 3.1880 -0.4366 -5.9552 23 6 2.5607 -0.4951 -7.1497 24 6 3.3356 -1.2239 -7.9870 25 17 2.9787 -1.5966 -9.6446 26 6 4.4746 -1.6246 -7.2797 27 7 4.3892 -1.1491 -6.0637 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2616 2.1369 32 1 1.7516 -1.7714 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3572 35 1 3.6403 -0.8759 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 6.0340 -1.6870 1.7387 38 1 5.8885 -0.1774 2.6705 39 1 5.4608 -2.3497 4.4238 40 1 7.3651 -3.6527 6.8327 41 1 2.2490 -1.6318 -1.1526 42 1 1.9758 -1.5507 -3.8326 43 1 3.6478 -1.1215 -3.3986 44 1 1.7018 0.6472 -4.9481 45 1 3.3739 1.0759 -4.5138 46 1 1.6111 -0.0421 -7.3932 47 1 5.2860 -2.2203 -7.6712 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176728310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:24 Heat of formation + Delta-G solvation = -0.560710 kcal Electronic energy + Delta-G solvation = -25920.529993 eV Core-core repulsion = 21971.567669 eV Total energy + Delta-G solvation = -3948.962325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29304 -40.94188 -38.13572 -37.37460 -36.86945 -35.27522 -34.78607 -33.07032 -32.02283 -31.29553 -30.17209 -28.82134 -26.10827 -25.67956 -23.72506 -22.37652 -22.19515 -22.03014 -21.60036 -21.27593 -19.14081 -18.78423 -17.67579 -17.40976 -16.86569 -16.68747 -16.28297 -16.15003 -15.56432 -15.46991 -15.30647 -15.26881 -14.83064 -14.53322 -14.41195 -14.22190 -14.10905 -13.93620 -13.47630 -13.25797 -13.02873 -12.90664 -12.86218 -12.73443 -12.46776 -12.46347 -12.28987 -12.25408 -12.12138 -11.89732 -11.81770 -11.50327 -11.45453 -11.39528 -10.98037 -10.96290 -10.60413 -10.07341 -9.43861 -9.02811 -7.98268 -5.27421 0.71595 0.94934 1.45855 1.46784 1.57163 1.57360 1.59028 1.76234 2.25991 2.53988 3.35290 3.46812 3.57349 3.65339 3.82005 3.90930 4.00886 4.05213 4.06701 4.15000 4.29464 4.35445 4.39844 4.42536 4.59705 4.60426 4.64379 4.69593 4.76871 4.81597 4.87131 4.93661 4.99046 5.01596 5.12516 5.26626 5.33112 5.35209 5.43856 5.45141 5.52197 5.59076 5.81460 6.24956 6.49618 6.52927 7.21108 7.30648 8.07244 8.30644 9.25489 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.001645 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.053090 B =17020.543356 C =19298.769395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.069 0.931 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.290 1.290 17 N -0.713 5.713 18 C 0.522 3.478 19 O -0.579 6.579 20 C -0.144 4.144 21 C 0.152 3.848 22 N -0.367 5.367 23 C 0.082 3.918 24 C -0.205 4.205 25 Cl -0.042 7.042 26 C 0.060 3.940 27 N -0.313 5.313 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.013 0.987 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.413 0.587 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.213 0.787 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.682 4.708 -29.393 34.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.217 1.217 17 N -0.364 5.364 18 C 0.309 3.691 19 O -0.460 6.460 20 C -0.184 4.184 21 C 0.031 3.969 22 N -0.148 5.148 23 C -0.066 4.066 24 C -0.244 4.244 25 Cl -0.014 7.014 26 C -0.127 4.127 27 N -0.135 5.135 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.250 0.750 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.144 0.856 45 H 0.105 0.895 46 H 0.230 0.770 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.228 5.724 -28.316 33.636 hybrid contribution 0.685 -0.764 -0.157 1.038 sum -16.544 4.960 -28.473 33.301 Atomic orbital electron populations 1.22108 0.94239 1.02812 1.02329 1.20959 0.94501 0.96718 0.83891 0.91245 1.21849 0.94614 1.01986 0.97090 1.21423 0.95898 1.00112 0.96858 1.21603 0.93670 1.00941 0.98838 1.20867 0.94326 0.94254 0.88455 1.42626 1.04512 1.65380 1.26623 1.19704 0.85363 1.27761 1.05460 0.90891 1.25604 1.02259 1.01140 0.97781 1.69822 1.34619 1.41880 1.15604 0.85047 0.79840 0.77110 0.77601 1.19198 1.21793 1.21726 1.46077 1.66364 1.14794 1.09203 1.20578 0.76724 0.86712 0.85131 1.90718 1.52105 1.17406 1.85756 1.21801 1.05278 0.99801 0.91562 1.21560 1.02061 0.93081 0.80180 1.48671 1.15132 1.40834 1.10209 1.22807 0.99980 0.98945 0.84873 1.20930 1.00370 1.13420 0.89637 1.98333 1.94658 1.93879 1.14562 1.24285 0.98715 0.99431 0.90233 1.77486 1.02171 1.13727 1.20069 0.91254 0.90773 0.93406 0.89667 0.89861 0.91580 0.92625 0.92438 0.91907 0.96489 0.96944 0.79410 0.93886 0.74992 0.86324 0.87437 0.85630 0.89550 0.77000 0.77652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 71.98 0.68 -1.44 16 2 C 0.14 2.26 2.57 44.99 0.12 2.37 16 3 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 4 C -0.12 -1.87 4.75 30.59 0.15 -1.72 16 5 C -0.10 -2.30 5.10 30.59 0.16 -2.14 16 6 C -0.11 -3.38 5.33 30.60 0.16 -3.22 16 7 C 0.15 5.98 6.26 86.38 0.54 6.52 16 8 N -0.75 -39.20 5.60 -343.45 -1.92 -41.12 16 9 C -0.25 -14.46 9.99 84.04 0.84 -13.62 16 10 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 12 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 13 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 N -0.71 -9.69 4.53 -442.54 -2.00 -11.69 16 18 C 0.52 8.32 7.79 87.66 0.68 9.00 16 19 O -0.58 -13.42 15.64 -3.02 -0.05 -13.47 16 20 C -0.14 -1.59 5.89 29.85 0.18 -1.41 16 21 C 0.15 1.78 5.80 86.38 0.50 2.28 16 22 N -0.37 -5.13 3.68 -347.95 -1.28 -6.41 16 23 C 0.08 0.92 11.43 83.54 0.95 1.87 16 24 C -0.21 -2.80 6.65 22.02 0.15 -2.65 16 25 Cl -0.04 -0.54 29.30 -2.72 -0.08 -0.62 16 26 C 0.06 0.90 12.02 85.25 1.02 1.93 16 27 N -0.31 -5.71 12.42 -56.98 -0.71 -6.42 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.37 20.55 7.67 -92.71 -0.71 19.84 16 40 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 41 H 0.41 3.91 8.60 -92.70 -0.80 3.11 16 42 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.13 1.01 8.03 -2.39 -0.02 0.99 16 45 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 46 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 47 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -74.41 411.37 2.33 -72.08 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.54 Total: 24.71 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.60 Total: -6.19 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.63 Total: -125.22 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.05 Total: -13.47 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -74.41 2.33 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176728310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.523 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds