Wall clock time and date at job start Wed Apr 1 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00351 * 2 1 4 4 C 1.52997 * 109.47471 * 180.02562 * 3 2 1 5 5 O 1.45193 * 109.47383 * 64.99771 * 4 3 2 6 6 C 1.34638 * 117.00213 * 180.02562 * 5 4 3 7 7 O 1.21504 * 120.00014 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99894 * 180.02562 * 6 5 4 9 9 C 1.47687 * 134.45496 * 179.97438 * 8 6 5 10 10 C 1.53381 * 85.96384 * 155.72366 * 9 8 6 11 11 C 1.47686 * 134.45646 * 359.97438 * 8 6 5 12 12 C 1.52550 * 113.84445 * 138.01511 * 10 9 8 13 13 N 1.46276 * 109.56958 * 176.53357 * 12 10 9 14 14 C 1.46494 * 118.71725 * 163.64906 * 13 12 10 15 15 C 1.53003 * 109.46742 * 90.00506 * 14 13 12 16 16 C 1.50708 * 109.46821 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47085 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47186 * 120.00214 * 20 18 16 23 23 H 1.48502 * 109.47556 * 240.00543 * 20 18 16 24 24 C 1.33720 * 122.56653 * 343.93868 * 13 12 10 25 25 O 1.21280 * 118.38380 * 183.21690 * 24 13 12 26 26 C 1.50173 * 123.23659 * 3.22694 * 24 13 12 27 27 O 1.42680 * 113.80095 * 268.70374 * 10 9 8 28 28 H 1.08997 * 109.47245 * 59.99521 * 1 2 3 29 29 H 1.08993 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46560 * 300.00139 * 1 2 3 31 31 H 1.08997 * 109.47165 * 60.00257 * 3 2 1 32 32 H 1.09010 * 109.47589 * 300.00591 * 3 2 1 33 33 H 1.09007 * 109.46825 * 304.99784 * 4 3 2 34 34 H 1.08997 * 109.47222 * 185.00669 * 4 3 2 35 35 H 1.09004 * 113.78731 * 41.46513 * 9 8 6 36 36 H 1.08995 * 113.79578 * 269.99297 * 9 8 6 37 37 H 1.09000 * 113.79550 * 90.01619 * 11 8 6 38 38 H 1.09000 * 113.79260 * 318.52929 * 11 8 6 39 39 H 1.09000 * 109.45660 * 56.50774 * 12 10 9 40 40 H 1.09002 * 109.44232 * 296.55182 * 12 10 9 41 41 H 1.09000 * 109.47241 * 209.99891 * 14 13 12 42 42 H 1.09000 * 109.47665 * 330.00539 * 14 13 12 43 43 H 1.08991 * 109.46998 * 299.99717 * 15 14 13 44 44 H 1.08999 * 109.47281 * 60.00367 * 15 14 13 45 45 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.35073 * 222.12348 * 26 24 13 47 47 H 1.09005 * 109.22331 * 102.49524 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9718 0.5698 -1.2415 6 6 5.2964 0.3896 -1.4017 7 8 6.0667 0.7362 -0.5283 8 7 5.7680 -0.1751 -2.5309 9 6 7.1145 -0.5160 -3.0327 10 6 6.4070 -1.5625 -3.9027 11 6 5.1452 -0.7011 -3.7624 12 6 6.9424 -1.6426 -5.3289 13 7 6.2626 -2.7201 -6.0476 14 6 6.3439 -2.7515 -7.5099 15 6 7.5643 -3.5705 -7.9353 16 6 7.6475 -3.6034 -9.4398 17 1 6.9046 -3.0910 -10.0330 18 6 8.6727 -4.2867 -10.0586 19 7 9.5777 -4.9103 -9.3361 20 14 8.7757 -4.3281 -11.9233 21 1 7.6456 -3.5552 -12.4987 22 1 10.0605 -3.7262 -12.3616 23 1 8.7029 -5.7353 -12.3921 24 6 5.5651 -3.6743 -5.4222 25 8 5.0812 -4.5650 -6.0882 26 6 5.3513 -3.6975 -3.9360 27 8 6.2995 -2.8453 -3.2873 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1763 0.0890 35 1 7.7705 -0.9448 -2.2750 36 1 7.5867 0.2837 -3.6032 37 1 5.0312 0.0435 -4.5503 38 1 4.2370 -1.2771 -3.5845 39 1 8.0137 -1.8425 -5.3039 40 1 6.7615 -0.6960 -5.8381 41 1 5.4407 -3.2086 -7.9143 42 1 6.4382 -1.7346 -7.8906 43 1 8.4673 -3.1136 -7.5310 44 1 7.4699 -4.5876 -7.5548 45 1 10.2991 -5.3906 -9.7715 46 1 5.4718 -4.7169 -3.5696 47 1 4.3422 -3.3505 -3.7132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274289283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:21 Heat of formation + Delta-G solvation = -146.556033 kcal Electronic energy + Delta-G solvation = -30414.495226 eV Core-core repulsion = 25986.200153 eV Total energy + Delta-G solvation = -4428.295073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56553 -40.30133 -39.03310 -38.24483 -36.70705 -36.09433 -35.48644 -33.09824 -31.49655 -30.56934 -29.81448 -27.80483 -26.89812 -26.63149 -26.31682 -24.58289 -23.29342 -22.19438 -21.14606 -20.29858 -18.67279 -18.38254 -17.66381 -17.40617 -17.25517 -16.74679 -16.40279 -16.15381 -16.02998 -15.72515 -15.64230 -15.21398 -14.81088 -14.50000 -14.37820 -14.18878 -13.75256 -13.53983 -13.27025 -13.12228 -12.94869 -12.81231 -12.60591 -12.57044 -12.28486 -12.03777 -11.76597 -11.69123 -11.35617 -11.21131 -10.95836 -10.93336 -10.84388 -10.67368 -10.37556 -10.18892 -9.93617 -9.87776 -9.39315 -9.18932 -9.01043 -8.37639 -8.19257 -6.02458 -4.05791 1.61344 2.59294 2.80040 3.02191 3.19048 3.24494 3.30283 3.38002 3.41267 3.42892 3.90431 4.19413 4.41838 4.44595 4.59054 4.64158 4.68667 4.76292 4.82888 4.90549 4.94044 4.96074 4.98418 5.10780 5.15588 5.22611 5.26299 5.27156 5.30890 5.33864 5.36654 5.42127 5.67511 6.00721 6.06112 6.44537 6.56245 6.63027 6.74334 6.82632 7.27376 7.54347 7.67653 7.86566 7.97369 8.00761 8.31613 8.44242 9.00967 9.58217 11.08936 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.002148 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.774892 B =13030.236105 C =13573.859437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.089 3.911 5 O -0.359 6.359 6 C 0.677 3.323 7 O -0.573 6.573 8 N -0.626 5.626 9 C 0.156 3.844 10 C 0.062 3.938 11 C 0.087 3.913 12 C 0.104 3.896 13 N -0.598 5.598 14 C 0.114 3.886 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.480 3.520 25 O -0.534 6.534 26 C 0.050 3.950 27 O -0.337 6.337 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.133 0.867 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 15.214 19.177 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.015 4.015 4 C 0.014 3.986 5 O -0.273 6.273 6 C 0.433 3.567 7 O -0.462 6.462 8 N -0.368 5.368 9 C 0.035 3.965 10 C 0.020 3.980 11 C -0.036 4.036 12 C -0.020 4.020 13 N -0.331 5.331 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.266 3.734 25 O -0.411 6.411 26 C -0.029 4.029 27 O -0.255 6.255 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.150 0.850 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.903 14.651 19.508 28.080 hybrid contribution -0.157 0.297 -1.065 1.117 sum -14.060 14.948 18.442 27.591 Atomic orbital electron populations 1.22775 0.80614 1.03183 0.99996 1.87984 1.20002 1.26962 1.95424 1.22636 0.91329 0.85963 1.01615 1.23015 0.92766 0.98636 0.84183 1.86288 1.23057 1.76152 1.41830 1.17379 0.81107 0.76598 0.81638 1.91005 1.57646 1.55531 1.42006 1.48368 1.10446 1.62898 1.15108 1.23142 0.84828 0.93515 0.95052 1.22991 0.96534 0.85412 0.93055 1.23906 0.98425 0.95709 0.85586 1.21851 0.98884 0.92139 0.89175 1.47689 1.50223 1.26012 1.09138 1.21981 1.02557 1.00954 0.75156 1.19363 0.91247 0.95633 0.96205 1.21113 1.10646 1.32804 0.91359 0.92480 1.25009 0.95704 0.95304 0.98350 1.69985 1.14175 1.33778 1.35155 0.86503 0.77848 0.77832 0.85592 1.19697 1.21038 1.20980 1.20619 0.79550 0.82381 0.90826 1.90777 1.49639 1.34899 1.65827 1.22875 0.93954 0.97189 0.88865 1.88130 1.61412 1.22429 1.53519 0.93837 0.89330 0.94015 0.90632 0.91955 0.90133 0.89463 0.87801 0.86930 0.87773 0.88902 0.89398 0.88956 0.90552 0.91605 0.96581 0.95878 0.92996 0.84964 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.53 10.67 -38.80 -0.41 -3.94 16 3 C 0.06 0.41 6.33 37.16 0.24 0.64 16 4 C 0.09 0.77 5.85 37.16 0.22 0.99 16 5 O -0.36 -4.21 10.18 -43.10 -0.44 -4.65 16 6 C 0.68 8.89 8.91 54.05 0.48 9.37 16 7 O -0.57 -8.93 16.86 -19.28 -0.32 -9.26 16 8 N -0.63 -6.98 3.61 -186.88 -0.67 -7.66 16 9 C 0.16 1.44 8.24 -3.20 -0.03 1.41 16 10 C 0.06 0.65 1.16 -90.53 -0.10 0.55 16 11 C 0.09 0.81 7.99 -3.18 -0.03 0.79 16 12 C 0.10 1.23 5.89 -4.39 -0.03 1.20 16 13 N -0.60 -9.84 2.83 -174.67 -0.50 -10.34 16 14 C 0.11 2.27 5.21 -4.04 -0.02 2.24 16 15 C 0.01 0.34 5.29 -27.88 -0.15 0.19 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.48 8.28 7.57 -11.71 -0.09 8.19 16 25 O -0.53 -11.62 16.33 5.56 0.09 -11.53 16 26 C 0.05 0.65 6.66 35.75 0.24 0.89 16 27 O -0.34 -4.33 10.66 -35.23 -0.38 -4.71 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.11 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.10 0.76 7.91 -51.93 -0.41 0.35 16 38 H 0.09 0.89 7.01 -51.93 -0.36 0.53 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.83 7.76 -51.93 -0.40 0.43 16 41 H 0.08 1.64 7.29 -51.93 -0.38 1.26 16 42 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 47 H 0.09 0.93 7.15 -51.93 -0.37 0.56 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -38.13 396.89 -6.88 -45.00 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -7.38 Total: -3.82 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 1.43 Total: 14.49 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.43 Total: -44.09 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.46 Total: -34.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.13 -6.88 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274289283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.554 kcal (2) G-P(sol) polarization free energy of solvation -38.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds