Wall clock time and date at job start Wed Apr 1 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00351 * 2 1 4 4 C 1.52997 * 109.47471 * 180.02562 * 3 2 1 5 5 O 1.45193 * 109.47383 * 64.99771 * 4 3 2 6 6 C 1.34638 * 117.00213 * 180.02562 * 5 4 3 7 7 O 1.21504 * 120.00014 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99894 * 180.02562 * 6 5 4 9 9 C 1.47687 * 134.45496 * 179.97438 * 8 6 5 10 10 C 1.53381 * 85.96384 * 155.72366 * 9 8 6 11 11 C 1.47686 * 134.45646 * 359.97438 * 8 6 5 12 12 C 1.52550 * 113.84445 * 138.01511 * 10 9 8 13 13 N 1.46276 * 109.56958 * 176.53357 * 12 10 9 14 14 C 1.46494 * 118.71725 * 163.64906 * 13 12 10 15 15 C 1.53003 * 109.46742 * 90.00506 * 14 13 12 16 16 C 1.50708 * 109.46821 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47085 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47186 * 120.00214 * 20 18 16 23 23 H 1.48502 * 109.47556 * 240.00543 * 20 18 16 24 24 C 1.33720 * 122.56653 * 343.93868 * 13 12 10 25 25 O 1.21280 * 118.38380 * 183.21690 * 24 13 12 26 26 C 1.50173 * 123.23659 * 3.22694 * 24 13 12 27 27 O 1.42680 * 113.80095 * 268.70374 * 10 9 8 28 28 H 1.08997 * 109.47245 * 59.99521 * 1 2 3 29 29 H 1.08993 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46560 * 300.00139 * 1 2 3 31 31 H 1.08997 * 109.47165 * 60.00257 * 3 2 1 32 32 H 1.09010 * 109.47589 * 300.00591 * 3 2 1 33 33 H 1.09007 * 109.46825 * 304.99784 * 4 3 2 34 34 H 1.08997 * 109.47222 * 185.00669 * 4 3 2 35 35 H 1.09004 * 113.78731 * 41.46513 * 9 8 6 36 36 H 1.08995 * 113.79578 * 269.99297 * 9 8 6 37 37 H 1.09000 * 113.79550 * 90.01619 * 11 8 6 38 38 H 1.09000 * 113.79260 * 318.52929 * 11 8 6 39 39 H 1.09000 * 109.45660 * 56.50774 * 12 10 9 40 40 H 1.09002 * 109.44232 * 296.55182 * 12 10 9 41 41 H 1.09000 * 109.47241 * 209.99891 * 14 13 12 42 42 H 1.09000 * 109.47665 * 330.00539 * 14 13 12 43 43 H 1.08991 * 109.46998 * 299.99717 * 15 14 13 44 44 H 1.08999 * 109.47281 * 60.00367 * 15 14 13 45 45 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.35073 * 222.12348 * 26 24 13 47 47 H 1.09005 * 109.22331 * 102.49524 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9718 0.5698 -1.2415 6 6 5.2964 0.3896 -1.4017 7 8 6.0667 0.7362 -0.5283 8 7 5.7680 -0.1751 -2.5309 9 6 7.1145 -0.5160 -3.0327 10 6 6.4070 -1.5625 -3.9027 11 6 5.1452 -0.7011 -3.7624 12 6 6.9424 -1.6426 -5.3289 13 7 6.2626 -2.7201 -6.0476 14 6 6.3439 -2.7515 -7.5099 15 6 7.5643 -3.5705 -7.9353 16 6 7.6475 -3.6034 -9.4398 17 1 6.9046 -3.0910 -10.0330 18 6 8.6727 -4.2867 -10.0586 19 7 9.5777 -4.9103 -9.3361 20 14 8.7757 -4.3281 -11.9233 21 1 7.6456 -3.5552 -12.4987 22 1 10.0605 -3.7262 -12.3616 23 1 8.7029 -5.7353 -12.3921 24 6 5.5651 -3.6743 -5.4222 25 8 5.0812 -4.5650 -6.0882 26 6 5.3513 -3.6975 -3.9360 27 8 6.2995 -2.8453 -3.2873 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1763 0.0890 35 1 7.7705 -0.9448 -2.2750 36 1 7.5867 0.2837 -3.6032 37 1 5.0312 0.0435 -4.5503 38 1 4.2370 -1.2771 -3.5845 39 1 8.0137 -1.8425 -5.3039 40 1 6.7615 -0.6960 -5.8381 41 1 5.4407 -3.2086 -7.9143 42 1 6.4382 -1.7346 -7.8906 43 1 8.4673 -3.1136 -7.5310 44 1 7.4699 -4.5876 -7.5548 45 1 10.2991 -5.3906 -9.7715 46 1 5.4718 -4.7169 -3.5696 47 1 4.3422 -3.3505 -3.7132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274289283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:21 Heat of formation + Delta-G solvation = -175.940016 kcal Electronic energy + Delta-G solvation = -30415.769411 eV Core-core repulsion = 25986.200153 eV Total energy + Delta-G solvation = -4429.569258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53006 -41.31580 -40.14821 -38.87886 -37.65868 -37.09047 -36.93947 -35.09951 -32.44845 -31.89656 -30.95639 -29.01829 -27.69727 -27.47926 -27.09607 -26.28880 -24.03938 -23.53318 -22.46928 -21.32634 -19.77565 -19.29753 -18.72784 -18.61652 -18.21414 -18.05907 -17.48596 -17.05830 -17.04555 -16.71827 -16.54784 -16.36613 -15.99506 -15.87188 -15.40708 -15.10724 -14.87908 -14.63415 -14.39603 -14.32725 -14.19506 -14.02045 -13.73964 -13.39706 -13.27373 -13.26251 -12.86644 -12.78576 -12.62042 -12.54740 -12.31624 -12.21323 -11.88597 -11.85472 -11.71933 -11.68628 -11.45221 -11.26367 -10.68624 -10.57127 -10.48663 -9.98859 -9.65903 -8.20398 -6.32223 0.82433 1.40803 1.42421 1.47300 1.55379 1.64724 1.85306 2.25022 2.42529 2.62729 2.77244 3.06185 3.13655 3.18242 3.61497 3.76401 3.88378 4.05503 4.07258 4.14066 4.26180 4.31764 4.36541 4.37942 4.44201 4.46907 4.48981 4.51562 4.55796 4.56525 4.59105 4.68010 4.70471 4.77910 4.88216 4.98331 5.19211 5.24427 5.48488 5.61407 5.70901 5.85229 6.17076 6.19325 6.39274 6.44369 6.84160 7.07543 7.08705 7.37342 8.91842 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.002148 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.774892 B =13030.236105 C =13573.859437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.063 3.937 4 C 0.081 3.919 5 O -0.366 6.366 6 C 0.671 3.329 7 O -0.606 6.606 8 N -0.629 5.629 9 C 0.158 3.842 10 C 0.060 3.940 11 C 0.093 3.907 12 C 0.100 3.900 13 N -0.598 5.598 14 C 0.130 3.870 15 C 0.023 3.977 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.285 1.285 24 C 0.473 3.527 25 O -0.589 6.589 26 C 0.063 3.937 27 O -0.350 6.350 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.001 0.999 44 H -0.029 1.029 45 H 0.263 0.737 46 H 0.138 0.862 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 17.707 18.730 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.013 4.013 4 C 0.007 3.993 5 O -0.279 6.279 6 C 0.428 3.572 7 O -0.498 6.498 8 N -0.371 5.371 9 C 0.037 3.963 10 C 0.018 3.982 11 C -0.029 4.029 12 C -0.022 4.022 13 N -0.329 5.329 14 C 0.008 3.992 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.211 1.211 24 C 0.261 3.739 25 O -0.471 6.471 26 C -0.016 4.016 27 O -0.269 6.269 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.020 0.980 44 H -0.010 1.010 45 H 0.071 0.929 46 H 0.156 0.844 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.959 17.185 19.077 29.716 hybrid contribution 0.176 -0.488 -0.870 1.013 sum -14.783 16.698 18.206 28.789 Atomic orbital electron populations 1.22917 0.79132 1.03723 1.01191 1.87928 1.21779 1.28479 1.95714 1.22766 0.89647 0.85449 1.03420 1.23301 0.94353 0.98851 0.82807 1.86297 1.22224 1.76298 1.43107 1.17576 0.81322 0.76585 0.81756 1.90973 1.58451 1.57168 1.43240 1.48499 1.11499 1.62071 1.15053 1.23387 0.84200 0.93908 0.94758 1.23071 0.97966 0.84796 0.92327 1.24065 0.97448 0.95896 0.85470 1.22172 0.98122 0.92140 0.89803 1.47712 1.50061 1.27053 1.08057 1.21547 0.98705 1.01363 0.77603 1.19189 0.93317 0.93620 0.95388 1.21594 1.10732 1.32670 0.92695 0.91401 1.26017 0.95330 0.94832 1.03857 1.70128 1.15000 1.34780 1.37489 0.85347 0.78551 0.77796 0.79010 1.18079 1.20060 1.21115 1.21460 0.78541 0.81378 0.92508 1.90746 1.51992 1.36996 1.67354 1.22802 0.95350 0.98000 0.85446 1.88130 1.61573 1.23560 1.53593 0.93080 0.89251 0.92331 0.87741 0.91037 0.91367 0.88088 0.88579 0.83313 0.84698 0.89067 0.89984 0.85017 0.92443 0.88182 0.98029 1.01018 0.92861 0.84443 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.19 10.67 -145.57 -1.55 -8.74 16 3 C 0.06 0.73 6.33 71.98 0.46 1.19 16 4 C 0.08 1.33 5.85 71.98 0.42 1.75 16 5 O -0.37 -8.14 10.18 -52.81 -0.54 -8.68 16 6 C 0.67 16.86 8.91 129.79 1.16 18.01 16 7 O -0.61 -18.63 16.86 19.83 0.33 -18.29 16 8 N -0.63 -12.64 3.61 -980.58 -3.54 -16.18 16 9 C 0.16 2.52 8.24 86.27 0.71 3.23 16 10 C 0.06 1.12 1.16 -10.64 -0.01 1.11 16 11 C 0.09 1.46 7.99 86.29 0.69 2.15 16 12 C 0.10 2.12 5.89 86.27 0.51 2.63 16 13 N -0.60 -19.20 2.83 -825.52 -2.34 -21.54 16 14 C 0.13 5.11 5.21 86.38 0.45 5.56 16 15 C 0.02 1.20 5.29 29.85 0.16 1.36 16 16 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 20 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.47 16.38 7.57 87.66 0.66 17.04 16 25 O -0.59 -26.59 16.33 -3.03 -0.05 -26.64 16 26 C 0.06 1.57 6.66 71.07 0.47 2.04 16 27 O -0.35 -8.57 10.66 -148.98 -1.59 -10.16 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.15 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.14 1.34 7.91 -2.39 -0.02 1.32 16 38 H 0.09 1.50 7.01 -2.39 -0.02 1.49 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.13 1.79 7.76 -2.39 -0.02 1.77 16 41 H 0.06 2.49 7.29 -2.39 -0.02 2.47 16 42 H 0.10 3.25 7.96 -2.39 -0.02 3.23 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 44 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.11 2.25 7.15 -2.38 -0.02 2.23 16 Total: -1.00 -86.65 396.89 1.62 -85.03 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.97 Total: 8.32 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 7.62 Total: 27.90 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -5.60 Total: -94.86 kcal Atomic # 8 Polarization: -69.12 SS G_CDS: -3.39 Total: -72.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -86.65 1.62 -85.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274289283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.913 kcal (2) G-P(sol) polarization free energy of solvation -86.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds