Wall clock time and date at job start Wed Apr 1 2020 00:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46790 * 2 1 4 4 O 1.42894 * 109.47304 * 240.00211 * 2 1 3 5 5 C 1.53002 * 109.47231 * 120.00070 * 2 1 3 6 6 H 1.09006 * 109.51243 * 294.90104 * 5 2 1 7 7 C 1.52877 * 109.58348 * 174.88284 * 5 2 1 8 8 N 1.47144 * 108.60685 * 187.92436 * 7 5 2 9 9 C 1.34783 * 120.98135 * 230.50039 * 8 7 5 10 10 O 1.21348 * 119.99794 * 6.60479 * 9 8 7 11 11 C 1.49446 * 119.99823 * 186.60650 * 9 8 7 12 12 O 1.21346 * 120.00582 * 6.45512 * 11 9 8 13 13 N 1.34784 * 119.99847 * 186.45193 * 11 9 8 14 14 C 1.47022 * 125.64654 * 0.02986 * 13 11 9 15 15 C 1.54324 * 107.26888 * 178.89553 * 14 13 11 16 16 C 1.55154 * 102.94466 * 337.80449 * 15 14 13 17 17 O 1.42892 * 111.00829 * 277.38975 * 16 15 14 18 18 C 1.50702 * 111.00484 * 153.57146 * 16 15 14 19 19 H 1.07992 * 120.00675 * 248.74022 * 18 16 15 20 20 C 1.37886 * 119.99388 * 68.74030 * 18 16 15 21 21 N 1.31508 * 120.00403 * 4.92505 * 20 18 16 22 22 Si 1.86799 * 119.99627 * 184.92298 * 20 18 16 23 23 H 1.48499 * 109.46977 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47410 * 300.00125 * 22 20 18 25 25 H 1.48508 * 109.47187 * 60.00115 * 22 20 18 26 26 C 1.47470 * 125.62752 * 179.97438 * 13 11 9 27 27 C 1.47154 * 118.04063 * 50.22543 * 8 7 5 28 28 C 1.53293 * 108.38242 * 309.71698 * 27 8 7 29 29 O 1.42958 * 109.51225 * 54.99891 * 5 2 1 30 30 H 1.09004 * 109.47278 * 299.99678 * 1 2 3 31 31 H 1.08996 * 109.47367 * 59.99749 * 1 2 3 32 32 H 1.09000 * 109.46790 * 179.97438 * 1 2 3 33 33 H 0.96699 * 114.00132 * 300.00248 * 4 2 1 34 34 H 1.09004 * 109.61788 * 68.09993 * 7 5 2 35 35 H 1.08997 * 109.52223 * 307.69005 * 7 5 2 36 36 H 1.09007 * 109.88449 * 59.48094 * 14 13 11 37 37 H 1.08993 * 110.01120 * 298.38996 * 14 13 11 38 38 H 1.09005 * 110.72078 * 219.43904 * 15 14 13 39 39 H 1.09003 * 110.72083 * 96.17145 * 15 14 13 40 40 H 0.96697 * 114.00061 * 171.82118 * 17 16 15 41 41 H 0.97007 * 119.99873 * 354.94244 * 21 20 18 42 42 H 1.08995 * 110.34682 * 85.33545 * 26 13 11 43 43 H 1.08995 * 110.40822 * 322.99015 * 26 13 11 44 44 H 1.09006 * 109.67430 * 69.43735 * 27 8 7 45 45 H 1.08995 * 109.68365 * 189.98850 * 27 8 7 46 46 H 1.08996 * 109.51290 * 172.22147 * 28 27 8 47 47 H 1.08992 * 109.51564 * 292.37513 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 1 1.7535 -0.1579 2.1374 7 6 3.5634 -0.8350 1.1892 8 7 4.0141 -1.6931 2.2963 9 6 4.9978 -1.2945 3.1270 10 8 5.4430 -0.1687 3.0439 11 6 5.5402 -2.2390 4.1503 12 8 5.1800 -3.3977 4.1579 13 7 6.4296 -1.8037 5.0648 14 6 6.9489 -0.4323 5.1698 15 6 7.9125 -0.3984 6.3748 16 6 7.4487 -1.6106 7.2250 17 8 6.3295 -1.2642 8.0431 18 6 8.5806 -2.1478 8.0624 19 1 9.0028 -3.1170 7.8419 20 6 9.0772 -1.4017 9.1102 21 7 8.5014 -0.2663 9.4401 22 14 10.5679 -2.0038 10.0614 23 1 10.9006 -1.0278 11.1300 24 1 10.2658 -3.3233 10.6720 25 1 11.7231 -2.1386 9.1378 26 6 7.0417 -2.6244 6.1262 27 6 3.3550 -2.9968 2.4735 28 6 1.8381 -2.7755 2.4742 29 8 1.4705 -2.0311 1.3103 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7210 -1.5951 -1.2329 34 1 4.0084 0.1552 1.2875 35 1 3.8584 -1.2777 0.2379 36 1 6.1264 0.2641 5.3333 37 1 7.4847 -0.1656 4.2590 38 1 7.7989 0.5306 6.9335 39 1 8.9440 -0.5290 6.0475 40 1 5.9264 -2.0167 8.4971 41 1 7.7739 0.0829 8.9017 42 1 7.9206 -3.1437 5.7443 43 1 6.3184 -3.3391 6.5188 44 1 3.6288 -3.6609 1.6536 45 1 3.6622 -3.4376 3.4218 46 1 1.3296 -3.7395 2.4655 47 1 1.5517 -2.2200 3.3671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326228192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:33 Heat of formation + Delta-G solvation = -187.686065 kcal Electronic energy + Delta-G solvation = -31547.092985 eV Core-core repulsion = 27117.014381 eV Total energy + Delta-G solvation = -4430.078605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08624 -39.79703 -38.48975 -37.66567 -37.16136 -35.24038 -34.35342 -32.42700 -32.34724 -30.26002 -30.15964 -28.62079 -28.31639 -25.67013 -24.65189 -23.82542 -22.84147 -21.82835 -21.03463 -20.00422 -19.25394 -17.74740 -17.48262 -17.25320 -16.83847 -16.81848 -16.14609 -15.86909 -15.71047 -15.53404 -15.00034 -14.87507 -14.76562 -14.48101 -13.86973 -13.68459 -13.43068 -13.35968 -13.16812 -12.94859 -12.80651 -12.60281 -12.43911 -12.26419 -11.95505 -11.84167 -11.69334 -11.29724 -11.27401 -11.20877 -10.92661 -10.80884 -10.62037 -10.52331 -10.36444 -10.18866 -10.15957 -9.56318 -9.14702 -8.82722 -8.60862 -8.43629 -8.11521 -6.42833 -4.31345 1.49213 2.22883 3.20503 3.26105 3.36746 3.37781 3.43701 3.57038 3.93938 4.22656 4.34864 4.41974 4.43124 4.66617 4.75716 4.81430 4.91805 4.98294 5.14817 5.17436 5.24045 5.28142 5.38345 5.41773 5.46452 5.52685 5.63908 5.67442 5.76053 5.76526 5.83985 5.99902 6.08431 6.14162 6.30504 6.46889 6.68421 6.70824 6.82924 6.91001 7.18217 7.27307 7.49368 7.72110 7.81448 8.09782 8.20534 8.75690 8.88324 9.53790 10.95376 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002392 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.742488 B =11701.563688 C =11955.399859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 H 0.113 0.887 4 O -0.558 6.558 5 C 0.045 3.955 6 H 0.071 0.929 7 C 0.084 3.916 8 N -0.592 5.592 9 C 0.513 3.487 10 O -0.512 6.512 11 C 0.513 3.487 12 O -0.533 6.533 13 N -0.568 5.568 14 C 0.106 3.894 15 C -0.114 4.114 16 C 0.234 3.766 17 O -0.567 6.567 18 C -0.640 4.640 19 H 0.055 0.945 20 C 0.040 3.960 21 N -0.887 5.887 22 Si 1.065 2.935 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.084 3.916 27 C 0.039 3.961 28 C 0.050 3.950 29 O -0.379 6.379 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.382 0.618 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.361 0.639 41 H 0.290 0.710 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.150 0.850 46 H 0.109 0.891 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -2.085 -16.342 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.057 3.943 3 H 0.130 0.870 4 O -0.364 6.364 5 C -0.014 4.014 6 H 0.089 0.911 7 C -0.038 4.038 8 N -0.327 5.327 9 C 0.296 3.704 10 O -0.387 6.387 11 C 0.297 3.703 12 O -0.414 6.414 13 N -0.298 5.298 14 C -0.016 4.016 15 C -0.153 4.153 16 C 0.194 3.806 17 O -0.372 6.372 18 C -0.678 4.678 19 H 0.074 0.926 20 C -0.170 4.170 21 N -0.522 5.522 22 Si 0.893 3.107 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.213 1.213 26 C -0.037 4.037 27 C -0.083 4.083 28 C -0.027 4.027 29 O -0.298 6.298 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.230 0.770 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.207 0.793 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.167 0.833 46 H 0.127 0.873 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.611 -0.599 -15.613 20.079 hybrid contribution -1.237 -1.418 -0.857 2.068 sum -13.848 -2.017 -16.470 21.613 Atomic orbital electron populations 1.22389 0.95417 1.03438 1.02560 1.21922 0.93939 0.95882 0.82530 0.86978 1.86529 1.76963 1.29819 1.43136 1.23195 0.92594 0.85508 1.00084 0.91132 1.22213 0.94378 0.97399 0.89824 1.47914 1.35568 1.19649 1.29599 1.20230 0.80440 0.87517 0.82225 1.90746 1.58437 1.19541 1.69934 1.19584 0.80774 0.87647 0.82338 1.90440 1.59026 1.18546 1.73421 1.48538 1.39275 1.13483 1.28539 1.22316 0.97980 0.81620 0.99669 1.22797 0.97874 1.00908 0.93686 1.19981 0.85246 0.89094 0.86245 1.86381 1.48417 1.37827 1.64610 1.22066 1.19641 1.06696 1.19355 0.92624 1.25745 1.00856 0.94753 0.95666 1.70635 1.23660 1.19591 1.38271 0.83608 0.75187 0.75632 0.76235 1.20728 1.21395 1.21305 1.23405 0.96939 0.95430 0.87960 1.23505 0.92261 0.84232 1.08294 1.23082 0.94660 0.97027 0.87977 1.87848 1.71297 1.26798 1.43845 0.91665 0.91695 0.91233 0.77008 0.87988 0.89397 0.91241 0.91210 0.90087 0.90091 0.79300 0.89687 0.90525 0.91005 0.90553 0.83311 0.87262 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.34 37.16 0.35 -0.83 16 2 C 0.12 0.89 3.52 -26.73 -0.09 0.80 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 4 O -0.56 -4.73 12.33 -39.97 -0.49 -5.23 16 5 C 0.05 0.41 2.66 -26.79 -0.07 0.34 16 6 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.08 0.93 5.84 -3.75 -0.02 0.91 16 8 N -0.59 -7.83 3.03 -173.04 -0.52 -8.35 16 9 C 0.51 8.37 7.71 -11.58 -0.09 8.29 16 10 O -0.51 -9.15 13.64 5.50 0.08 -9.07 16 11 C 0.51 9.22 7.78 -11.58 -0.09 9.13 16 12 O -0.53 -9.71 13.43 5.50 0.07 -9.64 16 13 N -0.57 -10.89 3.33 -170.97 -0.57 -11.46 16 14 C 0.11 2.03 5.49 -3.06 -0.02 2.01 16 15 C -0.11 -2.45 5.66 -24.90 -0.14 -2.59 16 16 C 0.23 5.36 0.69 -89.60 -0.06 5.30 16 17 O -0.57 -13.27 11.36 -35.23 -0.40 -13.67 16 18 C -0.64 -16.33 8.24 -34.44 -0.28 -16.61 16 19 H 0.06 1.41 7.77 -52.49 -0.41 1.00 16 20 C 0.04 1.06 5.32 -17.82 -0.09 0.97 16 21 N -0.89 -25.11 13.39 55.43 0.74 -24.37 16 22 Si 1.07 23.54 29.91 -169.99 -5.08 18.45 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.08 1.71 6.08 -2.48 -0.02 1.69 16 27 C 0.04 0.44 6.17 -3.53 -0.02 0.42 16 28 C 0.05 0.45 6.99 37.31 0.26 0.71 16 29 O -0.38 -3.51 9.17 -39.97 -0.37 -3.87 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 33 H 0.38 2.43 8.73 45.56 0.40 2.83 16 34 H 0.10 1.21 7.06 -51.93 -0.37 0.84 16 35 H 0.09 0.95 7.32 -51.93 -0.38 0.57 16 36 H 0.07 1.35 7.73 -51.92 -0.40 0.95 16 37 H 0.07 1.26 7.56 -51.93 -0.39 0.87 16 38 H 0.08 1.84 7.10 -51.93 -0.37 1.47 16 39 H 0.08 1.72 8.03 -51.93 -0.42 1.31 16 40 H 0.36 7.56 9.10 45.56 0.41 7.98 16 41 H 0.29 8.23 4.97 -40.82 -0.20 8.03 16 42 H 0.08 1.56 8.01 -51.93 -0.42 1.14 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.15 1.99 4.42 -54.37 -0.24 1.75 16 46 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -30.46 372.80 -6.67 -37.13 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.35 Total: 13.93 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.39 Total: 10.54 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.35 Total: -44.18 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.11 Total: -41.48 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.08 Total: 18.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.46 -6.67 -37.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326228192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.559 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds