Wall clock time and date at job start Wed Apr 1 2020 00:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46790 * 2 1 4 4 O 1.42894 * 109.47304 * 240.00211 * 2 1 3 5 5 C 1.53002 * 109.47231 * 120.00070 * 2 1 3 6 6 H 1.09006 * 109.51243 * 294.90104 * 5 2 1 7 7 C 1.52877 * 109.58348 * 174.88284 * 5 2 1 8 8 N 1.47144 * 108.60685 * 187.92436 * 7 5 2 9 9 C 1.34783 * 120.98135 * 230.50039 * 8 7 5 10 10 O 1.21348 * 119.99794 * 6.60479 * 9 8 7 11 11 C 1.49446 * 119.99823 * 186.60650 * 9 8 7 12 12 O 1.21346 * 120.00582 * 6.45512 * 11 9 8 13 13 N 1.34784 * 119.99847 * 186.45193 * 11 9 8 14 14 C 1.47022 * 125.64654 * 0.02986 * 13 11 9 15 15 C 1.54324 * 107.26888 * 178.89553 * 14 13 11 16 16 C 1.55154 * 102.94466 * 337.80449 * 15 14 13 17 17 O 1.42892 * 111.00829 * 277.38975 * 16 15 14 18 18 C 1.50702 * 111.00484 * 153.57146 * 16 15 14 19 19 H 1.07992 * 120.00675 * 248.74022 * 18 16 15 20 20 C 1.37886 * 119.99388 * 68.74030 * 18 16 15 21 21 N 1.31508 * 120.00403 * 4.92505 * 20 18 16 22 22 Si 1.86799 * 119.99627 * 184.92298 * 20 18 16 23 23 H 1.48499 * 109.46977 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47410 * 300.00125 * 22 20 18 25 25 H 1.48508 * 109.47187 * 60.00115 * 22 20 18 26 26 C 1.47470 * 125.62752 * 179.97438 * 13 11 9 27 27 C 1.47154 * 118.04063 * 50.22543 * 8 7 5 28 28 C 1.53293 * 108.38242 * 309.71698 * 27 8 7 29 29 O 1.42958 * 109.51225 * 54.99891 * 5 2 1 30 30 H 1.09004 * 109.47278 * 299.99678 * 1 2 3 31 31 H 1.08996 * 109.47367 * 59.99749 * 1 2 3 32 32 H 1.09000 * 109.46790 * 179.97438 * 1 2 3 33 33 H 0.96699 * 114.00132 * 300.00248 * 4 2 1 34 34 H 1.09004 * 109.61788 * 68.09993 * 7 5 2 35 35 H 1.08997 * 109.52223 * 307.69005 * 7 5 2 36 36 H 1.09007 * 109.88449 * 59.48094 * 14 13 11 37 37 H 1.08993 * 110.01120 * 298.38996 * 14 13 11 38 38 H 1.09005 * 110.72078 * 219.43904 * 15 14 13 39 39 H 1.09003 * 110.72083 * 96.17145 * 15 14 13 40 40 H 0.96697 * 114.00061 * 171.82118 * 17 16 15 41 41 H 0.97007 * 119.99873 * 354.94244 * 21 20 18 42 42 H 1.08995 * 110.34682 * 85.33545 * 26 13 11 43 43 H 1.08995 * 110.40822 * 322.99015 * 26 13 11 44 44 H 1.09006 * 109.67430 * 69.43735 * 27 8 7 45 45 H 1.08995 * 109.68365 * 189.98850 * 27 8 7 46 46 H 1.08996 * 109.51290 * 172.22147 * 28 27 8 47 47 H 1.08992 * 109.51564 * 292.37513 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 1 1.7535 -0.1579 2.1374 7 6 3.5634 -0.8350 1.1892 8 7 4.0141 -1.6931 2.2963 9 6 4.9978 -1.2945 3.1270 10 8 5.4430 -0.1687 3.0439 11 6 5.5402 -2.2390 4.1503 12 8 5.1800 -3.3977 4.1579 13 7 6.4296 -1.8037 5.0648 14 6 6.9489 -0.4323 5.1698 15 6 7.9125 -0.3984 6.3748 16 6 7.4487 -1.6106 7.2250 17 8 6.3295 -1.2642 8.0431 18 6 8.5806 -2.1478 8.0624 19 1 9.0028 -3.1170 7.8419 20 6 9.0772 -1.4017 9.1102 21 7 8.5014 -0.2663 9.4401 22 14 10.5679 -2.0038 10.0614 23 1 10.9006 -1.0278 11.1300 24 1 10.2658 -3.3233 10.6720 25 1 11.7231 -2.1386 9.1378 26 6 7.0417 -2.6244 6.1262 27 6 3.3550 -2.9968 2.4735 28 6 1.8381 -2.7755 2.4742 29 8 1.4705 -2.0311 1.3103 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7210 -1.5951 -1.2329 34 1 4.0084 0.1552 1.2875 35 1 3.8584 -1.2777 0.2379 36 1 6.1264 0.2641 5.3333 37 1 7.4847 -0.1656 4.2590 38 1 7.7989 0.5306 6.9335 39 1 8.9440 -0.5290 6.0475 40 1 5.9264 -2.0167 8.4971 41 1 7.7739 0.0829 8.9017 42 1 7.9206 -3.1437 5.7443 43 1 6.3184 -3.3391 6.5188 44 1 3.6288 -3.6609 1.6536 45 1 3.6622 -3.4376 3.4218 46 1 1.3296 -3.7395 2.4655 47 1 1.5517 -2.2200 3.3671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326228192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:33 Heat of formation + Delta-G solvation = -212.592695 kcal Electronic energy + Delta-G solvation = -31548.173018 eV Core-core repulsion = 27117.014381 eV Total energy + Delta-G solvation = -4431.158637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30874 -40.92142 -39.78640 -39.16132 -37.91810 -36.61935 -35.70392 -34.32576 -33.15152 -31.83596 -30.95010 -30.15861 -29.45527 -27.15208 -25.86165 -25.12584 -24.04945 -22.89492 -22.00303 -21.73613 -20.55472 -19.52394 -18.60513 -18.42135 -17.87195 -17.82018 -17.44828 -17.25718 -17.03773 -16.60139 -16.18105 -15.71659 -15.61821 -15.59688 -15.46883 -15.11060 -14.90614 -14.68087 -14.40111 -14.28506 -14.03207 -13.99448 -13.72370 -13.40172 -13.19316 -12.96262 -12.83823 -12.62095 -12.55501 -12.35697 -12.30577 -12.07872 -11.92737 -11.90685 -11.83317 -11.46454 -11.32484 -11.03832 -10.58824 -10.45184 -10.22246 -9.87250 -9.74384 -8.50106 -6.39272 0.13877 0.98480 1.59071 1.64279 1.83765 1.89886 2.08971 2.53851 2.59734 2.89759 3.20029 3.30423 3.54531 3.64279 3.70290 3.73399 3.82862 3.95262 3.99965 4.08426 4.14965 4.24493 4.27725 4.32233 4.40297 4.41797 4.54837 4.64885 4.68226 4.70027 4.82117 4.88067 4.89342 4.97324 5.06123 5.08630 5.13072 5.32744 5.40139 5.75125 5.86372 5.94341 6.07678 6.17194 6.38597 6.66834 6.71072 6.76340 7.09071 7.53981 8.86868 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002392 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.742488 B =11701.563688 C =11955.399859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 H 0.119 0.881 4 O -0.570 6.570 5 C 0.051 3.949 6 H 0.068 0.932 7 C 0.083 3.917 8 N -0.583 5.583 9 C 0.511 3.489 10 O -0.533 6.533 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.576 5.576 14 C 0.123 3.877 15 C -0.111 4.111 16 C 0.223 3.777 17 O -0.578 6.578 18 C -0.645 4.645 19 H 0.054 0.946 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 1.109 2.891 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.095 3.905 27 C 0.037 3.963 28 C 0.054 3.946 29 O -0.375 6.375 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.390 0.610 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.368 0.632 41 H 0.278 0.722 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 -3.028 -17.788 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.060 3.940 3 H 0.136 0.864 4 O -0.377 6.377 5 C -0.008 4.008 6 H 0.086 0.914 7 C -0.038 4.038 8 N -0.317 5.317 9 C 0.294 3.706 10 O -0.410 6.410 11 C 0.296 3.704 12 O -0.416 6.416 13 N -0.307 5.307 14 C 0.001 3.999 15 C -0.149 4.149 16 C 0.183 3.817 17 O -0.384 6.384 18 C -0.682 4.682 19 H 0.073 0.927 20 C -0.209 4.209 21 N -0.554 5.554 22 Si 0.932 3.068 23 H -0.215 1.215 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.026 4.026 27 C -0.084 4.084 28 C -0.023 4.023 29 O -0.294 6.294 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.240 0.760 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.215 0.785 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.149 0.851 46 H 0.154 0.846 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.641 -1.590 -17.104 21.935 hybrid contribution -1.017 -1.207 -0.485 1.651 sum -14.657 -2.796 -17.589 23.066 Atomic orbital electron populations 1.22331 0.94359 1.03444 1.03063 1.21962 0.94666 0.95840 0.81484 0.86369 1.86517 1.77266 1.30638 1.43320 1.23194 0.91003 0.85676 1.00915 0.91357 1.22380 0.95808 0.96604 0.89025 1.48046 1.34233 1.20447 1.29000 1.19930 0.81262 0.86966 0.82476 1.90736 1.59541 1.20056 1.70673 1.19960 0.80161 0.87989 0.82246 1.90464 1.58800 1.18822 1.73517 1.48505 1.40097 1.13140 1.28977 1.22102 0.97252 0.81687 0.98908 1.22676 0.98406 0.99500 0.94323 1.20034 0.84623 0.90333 0.86679 1.86362 1.48468 1.38559 1.65012 1.22388 1.20047 1.06443 1.19364 0.92743 1.26983 1.02679 0.94373 0.96861 1.70742 1.24503 1.20999 1.39109 0.83031 0.72939 0.75534 0.75298 1.21524 1.19859 1.19675 1.23108 0.97112 0.94760 0.87659 1.23557 0.93790 0.83411 1.07650 1.23129 0.92935 0.98330 0.87877 1.87872 1.70975 1.26736 1.43806 0.91227 0.91141 0.91441 0.76024 0.88796 0.88737 0.91670 0.90011 0.91930 0.90263 0.78478 0.90913 0.90540 0.90782 0.89421 0.85092 0.84555 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.34 71.98 0.67 -1.21 16 2 C 0.12 1.58 3.52 30.60 0.11 1.69 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 4 O -0.57 -8.45 12.33 -144.45 -1.78 -10.23 16 5 C 0.05 0.83 2.66 30.55 0.08 0.91 16 6 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 7 C 0.08 1.71 5.84 86.22 0.50 2.22 16 8 N -0.58 -14.62 3.03 -819.74 -2.48 -17.10 16 9 C 0.51 16.28 7.71 87.27 0.67 16.96 16 10 O -0.53 -18.76 13.64 -3.24 -0.04 -18.81 16 11 C 0.51 18.04 7.78 87.27 0.68 18.72 16 12 O -0.54 -18.98 13.43 -3.23 -0.04 -19.03 16 13 N -0.58 -21.86 3.33 -813.18 -2.71 -24.57 16 14 C 0.12 4.68 5.49 86.73 0.48 5.16 16 15 C -0.11 -4.82 5.66 31.78 0.18 -4.64 16 16 C 0.22 10.30 0.69 -10.13 -0.01 10.29 16 17 O -0.58 -27.44 11.36 -148.98 -1.69 -29.14 16 18 C -0.64 -32.93 8.24 25.60 0.21 -32.72 16 19 H 0.05 2.74 7.77 -2.91 -0.02 2.71 16 20 C 0.00 -0.25 5.32 84.66 0.45 0.20 16 21 N -0.92 -52.76 13.39 21.45 0.29 -52.48 16 22 Si 1.11 47.14 29.91 68.60 2.05 49.19 16 23 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 C 0.10 3.86 6.08 86.86 0.53 4.39 16 27 C 0.04 0.77 6.17 86.35 0.53 1.31 16 28 C 0.05 0.85 6.99 72.08 0.50 1.36 16 29 O -0.38 -5.95 9.17 -144.45 -1.33 -7.28 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 33 H 0.39 4.09 8.73 -74.06 -0.65 3.44 16 34 H 0.09 2.13 7.06 -2.38 -0.02 2.11 16 35 H 0.09 1.86 7.32 -2.39 -0.02 1.84 16 36 H 0.06 2.54 7.73 -2.38 -0.02 2.52 16 37 H 0.08 2.92 7.56 -2.39 -0.02 2.90 16 38 H 0.06 2.94 7.10 -2.38 -0.02 2.92 16 39 H 0.08 3.41 8.03 -2.39 -0.02 3.40 16 40 H 0.37 15.64 9.10 -74.06 -0.67 14.97 16 41 H 0.28 16.25 4.97 -92.70 -0.46 15.79 16 42 H 0.08 3.07 8.01 -2.39 -0.02 3.05 16 43 H 0.07 2.93 8.04 -2.39 -0.02 2.91 16 44 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.13 3.33 4.42 -40.93 -0.18 3.15 16 46 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.32 372.80 -2.31 -66.62 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.16 Total: 38.19 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 5.59 Total: 24.62 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -4.90 Total: -94.14 kcal Atomic # 8 Polarization: -79.59 SS G_CDS: -4.89 Total: -84.48 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.05 Total: 49.19 kcal Total: -64.32 -2.31 -66.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326228192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.970 kcal (2) G-P(sol) polarization free energy of solvation -64.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds