Wall clock time and date at job start Wed Apr 1 2020 00:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47320 * 239.99651 * 2 1 3 5 5 N 1.46506 * 109.47084 * 184.99682 * 4 2 1 6 6 C 1.34772 * 120.00016 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99844 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46878 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99562 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00346 * 0.02562 * 10 9 8 12 12 C 1.38807 * 119.99767 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99979 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46805 * 60.00348 * 14 12 10 16 16 H 1.48500 * 109.47207 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46981 * 300.00264 * 14 12 10 18 18 N 1.46905 * 109.46833 * 119.99179 * 2 1 3 19 19 C 1.46902 * 110.99712 * 54.70478 * 18 2 1 20 20 C 1.46893 * 111.00256 * 290.74505 * 18 2 1 21 21 H 1.08999 * 109.47212 * 62.54860 * 20 18 2 22 22 C 1.52999 * 109.46915 * 182.54169 * 20 18 2 23 23 C 1.50695 * 109.47384 * 302.54124 * 20 18 2 24 24 N 1.31072 * 126.66106 * 314.98106 * 23 20 18 25 25 N 1.28839 * 107.98679 * 180.02562 * 24 23 20 26 26 N 1.28740 * 109.40520 * 359.97438 * 25 24 23 27 27 N 1.29018 * 108.80197 * 359.97438 * 26 25 24 28 28 C 1.46499 * 126.43676 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.46902 * 54.20515 * 1 2 3 30 30 H 1.09004 * 109.47024 * 174.19809 * 1 2 3 31 31 H 1.08998 * 109.47522 * 294.19539 * 1 2 3 32 32 H 1.09000 * 109.47276 * 304.99531 * 4 2 1 33 33 H 1.08998 * 109.47318 * 65.00392 * 4 2 1 34 34 H 0.97003 * 119.99898 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.46905 * 300.00352 * 8 6 5 36 36 H 1.08998 * 109.46671 * 60.00590 * 8 6 5 37 37 H 0.97001 * 120.00025 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.46863 * 296.03572 * 19 18 2 39 39 H 1.08995 * 109.47739 * 56.03834 * 19 18 2 40 40 H 1.08999 * 109.47310 * 176.04468 * 19 18 2 41 41 H 1.09006 * 109.47102 * 173.32390 * 22 20 18 42 42 H 1.09001 * 109.47231 * 293.32461 * 22 20 18 43 43 H 1.09002 * 109.47339 * 53.32863 * 22 20 18 44 44 H 1.09000 * 109.47027 * 89.97432 * 28 27 26 45 45 H 1.08993 * 109.47596 * 209.98115 * 28 27 26 46 46 H 1.09000 * 109.47083 * 329.97969 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5002 -0.8263 -1.1904 6 6 4.1731 -1.4291 -2.1904 7 8 3.5701 -1.8843 -3.1392 8 6 5.6751 -1.5377 -2.1297 9 16 6.2785 -2.3909 -3.6076 10 6 8.0101 -2.3791 -3.2820 11 1 8.3862 -1.9271 -2.3761 12 6 8.8907 -2.9518 -4.1893 13 7 8.4323 -3.5031 -5.2932 14 14 10.7266 -2.9387 -3.8445 15 1 10.9972 -3.6624 -2.5763 16 1 11.4445 -3.6073 -4.9594 17 1 11.1976 -1.5356 -3.7240 18 7 2.0196 -0.6924 1.1996 19 6 1.4480 -2.0419 1.2986 20 6 1.7371 0.0893 2.4108 21 1 0.6591 0.1967 2.5307 22 6 2.3163 -0.6317 3.6296 23 6 2.3673 1.4526 2.2872 24 7 3.5789 1.7193 1.8643 25 7 3.7424 2.9966 1.9055 26 7 2.6665 3.5517 2.3432 27 7 1.7948 2.6329 2.5889 28 6 0.4377 2.8358 3.1021 29 1 -0.3633 0.6011 -0.8336 30 1 -0.3633 -1.0224 -0.1039 31 1 -0.3634 0.4212 0.9373 32 1 1.6055 -1.7199 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.9824 -0.4626 -0.4314 35 1 6.1099 -0.5392 -2.0840 36 1 5.9630 -2.1005 -1.2418 37 1 9.0478 -3.9029 -5.9274 38 1 0.3676 -1.9705 1.4245 39 1 1.6717 -2.5991 0.3889 40 1 1.8802 -2.5576 2.1561 41 1 2.2120 0.0022 4.5103 42 1 1.7782 -1.5661 3.7888 43 1 3.3715 -0.8447 3.4583 44 1 -0.2511 2.9634 2.2670 45 1 0.1384 1.9687 3.6908 46 1 0.4162 3.7263 3.7302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329387213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:20 Heat of formation + Delta-G solvation = 96.830554 kcal Electronic energy + Delta-G solvation = -28139.464108 eV Core-core repulsion = 24229.061443 eV Total energy + Delta-G solvation = -3910.402665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53165 -39.87570 -38.56280 -36.09341 -34.98871 -33.21200 -32.32687 -31.91890 -29.88044 -29.24509 -28.87625 -27.00649 -26.05077 -25.29867 -24.42230 -23.35190 -21.85144 -20.12528 -19.98107 -17.99715 -17.80343 -17.67932 -17.08080 -16.19700 -16.12328 -16.01514 -15.04723 -14.80697 -14.70870 -14.49652 -14.27756 -14.05169 -13.81440 -13.66437 -13.45680 -13.33689 -12.90545 -12.81336 -12.66280 -12.49938 -12.45753 -12.33363 -12.17863 -12.00107 -11.77692 -11.51706 -11.33430 -11.22787 -11.12872 -10.95073 -10.93699 -10.67273 -10.35209 -9.71553 -9.24755 -8.96215 -8.86636 -8.64641 -8.11633 -6.38080 -6.11677 -3.80874 0.83664 1.52294 1.97376 3.08505 3.21930 3.29166 3.31889 3.35122 3.37167 3.43069 3.75439 3.89780 4.10057 4.23105 4.30942 4.34504 4.39983 4.54468 4.60921 4.66298 4.79017 4.87946 4.98856 5.04935 5.12090 5.18262 5.20948 5.23263 5.25390 5.36275 5.38602 5.50048 5.57768 5.66034 5.71421 5.72592 5.75721 5.92547 6.08588 6.34209 6.44033 6.48547 6.85573 7.70186 7.99484 8.33103 8.46005 8.81830 9.33745 10.95760 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002515 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.124086 B =11132.517649 C =11980.577186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.065 3.935 3 H 0.082 0.918 4 C 0.136 3.864 5 N -0.725 5.725 6 C 0.532 3.468 7 O -0.527 6.527 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.532 4.532 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.515 5.515 19 C 0.017 3.983 20 C 0.167 3.833 21 H 0.066 0.934 22 C -0.146 4.146 23 C 0.185 3.815 24 N -0.270 5.270 25 N -0.072 5.072 26 N -0.097 5.097 27 N -0.312 5.312 28 C 0.076 3.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.409 0.591 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.519 9.564 22.937 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.043 4.043 3 H 0.100 0.900 4 C 0.011 3.989 5 N -0.381 5.381 6 C 0.318 3.682 7 O -0.403 6.403 8 C -0.301 4.301 9 S 0.164 5.836 10 C -0.681 4.681 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.199 1.199 18 N -0.239 5.239 19 C -0.131 4.131 20 C 0.056 3.944 21 H 0.084 0.916 22 C -0.204 4.204 23 C -0.093 4.093 24 N -0.119 5.119 25 N -0.066 5.066 26 N -0.083 5.083 27 N -0.114 5.114 28 C -0.065 4.065 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.890 9.555 20.817 32.382 hybrid contribution 0.276 0.525 2.034 2.119 sum -22.613 10.079 22.852 33.692 Atomic orbital electron populations 1.22403 0.96279 1.03433 1.02250 1.22048 0.93324 0.98650 0.90310 0.90010 1.21197 0.82061 1.00256 0.95431 1.45845 1.06351 1.61322 1.24533 1.20288 0.89495 0.76787 0.81650 1.90680 1.69948 1.46752 1.32890 1.23504 0.93714 1.05630 1.07272 1.85308 1.04469 1.73184 1.20684 1.22852 0.91655 1.44002 1.09568 0.90953 1.24983 0.99494 0.94644 0.94493 1.70015 1.35388 1.35703 1.09413 0.86238 0.82927 0.78481 0.77945 1.19952 1.20911 1.19934 1.62090 1.59174 1.02675 0.99993 1.22573 0.97209 0.88889 1.04398 1.20033 0.96528 0.84531 0.93354 0.91600 1.21925 1.03925 1.00304 0.94259 1.25916 0.91560 0.91150 1.00718 1.75146 1.12762 1.06973 1.16999 1.78756 1.14276 0.99952 1.13605 1.78935 0.96146 1.16756 1.16432 1.48460 1.14634 1.04780 1.43548 1.22399 0.76467 1.06051 1.01615 0.91227 0.91089 0.92722 0.91479 0.91386 0.75499 0.89269 0.89204 0.92259 0.94810 0.89806 0.90370 0.92026 0.90545 0.89746 0.88448 0.87868 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.35 37.16 0.31 -0.72 16 2 C 0.07 0.55 2.29 -67.71 -0.15 0.40 16 3 H 0.08 0.84 6.59 -51.93 -0.34 0.49 16 4 C 0.14 1.62 4.83 -4.04 -0.02 1.60 16 5 N -0.73 -10.82 5.39 -60.29 -0.32 -11.15 16 6 C 0.53 10.60 7.85 -10.98 -0.09 10.51 16 7 O -0.53 -12.42 15.86 5.56 0.09 -12.33 16 8 C -0.15 -3.28 6.16 36.01 0.22 -3.06 16 9 S -0.06 -1.78 20.57 -107.50 -2.21 -4.00 16 10 C -0.53 -15.75 9.50 30.94 0.29 -15.46 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 13 N -0.87 -26.92 13.22 55.49 0.73 -26.19 16 14 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.51 -3.87 4.02 -228.30 -0.92 -4.79 16 19 C 0.02 0.10 8.31 60.07 0.50 0.60 16 20 C 0.17 0.96 2.10 -68.87 -0.14 0.81 16 21 H 0.07 0.20 5.63 -51.93 -0.29 -0.09 16 22 C -0.15 -0.71 8.68 37.16 0.32 -0.39 16 23 C 0.19 1.58 5.23 -155.43 -0.81 0.77 16 24 N -0.27 -3.39 12.21 32.70 0.40 -2.99 16 25 N -0.07 -0.99 13.43 60.35 0.81 -0.18 16 26 N -0.10 -1.08 13.29 60.35 0.80 -0.28 16 27 N -0.31 -2.28 3.75 -65.03 -0.24 -2.52 16 28 C 0.08 0.12 11.05 59.85 0.66 0.78 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 6.78 -51.93 -0.35 0.03 16 31 H 0.05 0.20 6.49 -51.93 -0.34 -0.13 16 32 H 0.07 0.81 6.69 -51.93 -0.35 0.46 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.41 5.76 8.14 -40.82 -0.33 5.43 16 35 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 36 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 37 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.03 0.15 6.59 -51.93 -0.34 -0.19 16 39 H 0.08 0.69 6.38 -51.93 -0.33 0.35 16 40 H 0.08 0.42 6.43 -51.93 -0.33 0.09 16 41 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.25 6.76 -51.93 -0.35 -0.10 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 45 H 0.10 -0.10 7.40 -51.93 -0.38 -0.49 16 46 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -38.91 387.58 -5.72 -44.64 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.67 Total: -1.07 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 1.00 Total: -2.12 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 1.26 Total: -48.10 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.91 -5.72 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329387213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.469 kcal (2) G-P(sol) polarization free energy of solvation -38.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds