Wall clock time and date at job start Wed Apr 1 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47320 * 239.99651 * 2 1 3 5 5 N 1.46506 * 109.47084 * 184.99682 * 4 2 1 6 6 C 1.34772 * 120.00016 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99844 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46878 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99562 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00346 * 0.02562 * 10 9 8 12 12 C 1.38807 * 119.99767 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99979 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46805 * 60.00348 * 14 12 10 16 16 H 1.48500 * 109.47207 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46981 * 300.00264 * 14 12 10 18 18 N 1.46905 * 109.46833 * 119.99179 * 2 1 3 19 19 C 1.46902 * 110.99712 * 54.70478 * 18 2 1 20 20 C 1.46893 * 111.00256 * 290.74505 * 18 2 1 21 21 H 1.08999 * 109.47212 * 62.54860 * 20 18 2 22 22 C 1.52999 * 109.46915 * 182.54169 * 20 18 2 23 23 C 1.50695 * 109.47384 * 302.54124 * 20 18 2 24 24 N 1.31072 * 126.66106 * 314.98106 * 23 20 18 25 25 N 1.28839 * 107.98679 * 180.02562 * 24 23 20 26 26 N 1.28740 * 109.40520 * 359.97438 * 25 24 23 27 27 N 1.29018 * 108.80197 * 359.97438 * 26 25 24 28 28 C 1.46499 * 126.43676 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.46902 * 54.20515 * 1 2 3 30 30 H 1.09004 * 109.47024 * 174.19809 * 1 2 3 31 31 H 1.08998 * 109.47522 * 294.19539 * 1 2 3 32 32 H 1.09000 * 109.47276 * 304.99531 * 4 2 1 33 33 H 1.08998 * 109.47318 * 65.00392 * 4 2 1 34 34 H 0.97003 * 119.99898 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.46905 * 300.00352 * 8 6 5 36 36 H 1.08998 * 109.46671 * 60.00590 * 8 6 5 37 37 H 0.97001 * 120.00025 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.46863 * 296.03572 * 19 18 2 39 39 H 1.08995 * 109.47739 * 56.03834 * 19 18 2 40 40 H 1.08999 * 109.47310 * 176.04468 * 19 18 2 41 41 H 1.09006 * 109.47102 * 173.32390 * 22 20 18 42 42 H 1.09001 * 109.47231 * 293.32461 * 22 20 18 43 43 H 1.09002 * 109.47339 * 53.32863 * 22 20 18 44 44 H 1.09000 * 109.47027 * 89.97432 * 28 27 26 45 45 H 1.08993 * 109.47596 * 209.98115 * 28 27 26 46 46 H 1.09000 * 109.47083 * 329.97969 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5002 -0.8263 -1.1904 6 6 4.1731 -1.4291 -2.1904 7 8 3.5701 -1.8843 -3.1392 8 6 5.6751 -1.5377 -2.1297 9 16 6.2785 -2.3909 -3.6076 10 6 8.0101 -2.3791 -3.2820 11 1 8.3862 -1.9271 -2.3761 12 6 8.8907 -2.9518 -4.1893 13 7 8.4323 -3.5031 -5.2932 14 14 10.7266 -2.9387 -3.8445 15 1 10.9972 -3.6624 -2.5763 16 1 11.4445 -3.6073 -4.9594 17 1 11.1976 -1.5356 -3.7240 18 7 2.0196 -0.6924 1.1996 19 6 1.4480 -2.0419 1.2986 20 6 1.7371 0.0893 2.4108 21 1 0.6591 0.1967 2.5307 22 6 2.3163 -0.6317 3.6296 23 6 2.3673 1.4526 2.2872 24 7 3.5789 1.7193 1.8643 25 7 3.7424 2.9966 1.9055 26 7 2.6665 3.5517 2.3432 27 7 1.7948 2.6329 2.5889 28 6 0.4377 2.8358 3.1021 29 1 -0.3633 0.6011 -0.8336 30 1 -0.3633 -1.0224 -0.1039 31 1 -0.3634 0.4212 0.9373 32 1 1.6055 -1.7199 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.9824 -0.4626 -0.4314 35 1 6.1099 -0.5392 -2.0840 36 1 5.9630 -2.1005 -1.2418 37 1 9.0478 -3.9029 -5.9274 38 1 0.3676 -1.9705 1.4245 39 1 1.6717 -2.5991 0.3889 40 1 1.8802 -2.5576 2.1561 41 1 2.2120 0.0022 4.5103 42 1 1.7782 -1.5661 3.7888 43 1 3.3715 -0.8447 3.4583 44 1 -0.2511 2.9634 2.2670 45 1 0.1384 1.9687 3.6908 46 1 0.4162 3.7263 3.7302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329387213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:18 Heat of formation + Delta-G solvation = 65.109051 kcal Electronic energy + Delta-G solvation = -28140.839656 eV Core-core repulsion = 24229.061443 eV Total energy + Delta-G solvation = -3911.778213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.22251 -40.85904 -39.75948 -36.68670 -35.96328 -34.57800 -34.18924 -32.68560 -30.95995 -30.21854 -29.23727 -27.73913 -27.48270 -26.87178 -25.10066 -23.95812 -22.49976 -21.61595 -20.69252 -19.75627 -18.51002 -18.36612 -17.75766 -17.69525 -17.33293 -16.86931 -16.62061 -16.39370 -15.91416 -15.53184 -15.04783 -14.65588 -14.58420 -14.56688 -14.50229 -14.16370 -14.04242 -13.82416 -13.51222 -13.27290 -13.15779 -13.13228 -13.11233 -12.87200 -12.81121 -12.74710 -12.58684 -12.46179 -12.29339 -12.04830 -11.80992 -11.77609 -11.70959 -11.12251 -11.02622 -10.92937 -10.28341 -10.03111 -9.33737 -8.65205 -8.33594 -6.11338 0.20363 1.10151 1.20021 1.28017 1.44336 1.46729 1.58116 1.65603 2.27708 2.34486 2.66907 2.86764 2.99934 3.33716 3.37445 3.63820 3.79027 3.85027 4.04890 4.07446 4.15509 4.21597 4.25293 4.30311 4.33353 4.42563 4.53317 4.53698 4.55749 4.64505 4.67036 4.73558 4.78609 4.81792 4.87730 4.94827 5.14052 5.21683 5.23525 5.33438 5.42587 5.49908 5.92630 5.99134 6.20913 6.57776 7.07319 7.28987 7.59107 8.75521 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002515 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.124086 B =11132.517649 C =11980.577186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.064 0.936 4 C 0.131 3.869 5 N -0.701 5.701 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.129 4.129 9 S -0.144 6.144 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.264 1.264 18 N -0.535 5.535 19 C 0.018 3.982 20 C 0.171 3.829 21 H 0.108 0.892 22 C -0.143 4.143 23 C 0.192 3.808 24 N -0.310 5.310 25 N -0.119 5.119 26 N -0.111 5.111 27 N -0.297 5.297 28 C 0.057 3.943 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.416 0.584 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.272 0.728 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.292 9.820 25.912 37.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 H 0.082 0.918 4 C 0.007 3.993 5 N -0.354 5.354 6 C 0.319 3.681 7 O -0.448 6.448 8 C -0.280 4.280 9 S 0.083 5.917 10 C -0.696 4.696 11 H 0.097 0.903 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.189 1.189 18 N -0.261 5.261 19 C -0.129 4.129 20 C 0.060 3.940 21 H 0.125 0.875 22 C -0.201 4.201 23 C -0.087 4.087 24 N -0.159 5.159 25 N -0.113 5.113 26 N -0.097 5.097 27 N -0.100 5.100 28 C -0.082 4.082 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.710 9.842 23.851 35.725 hybrid contribution 0.644 0.488 1.221 1.464 sum -24.066 10.329 25.072 36.256 Atomic orbital electron populations 1.22375 0.93472 1.04159 1.03813 1.21812 0.95272 0.96866 0.89060 0.91797 1.21446 0.79647 1.00850 0.97371 1.45668 1.07870 1.58976 1.22918 1.19971 0.88726 0.77205 0.82197 1.90665 1.70343 1.49039 1.34720 1.23347 0.95258 1.05218 1.04156 1.85418 1.05652 1.74902 1.25682 1.23173 0.91874 1.44486 1.10110 0.90294 1.26120 1.05202 0.93745 0.93982 1.70172 1.37461 1.36499 1.10549 0.85015 0.75700 0.79014 0.78331 1.18593 1.20060 1.18913 1.61971 1.60316 1.03425 1.00339 1.22570 0.98910 0.87783 1.03610 1.20283 0.98484 0.82686 0.92573 0.87485 1.21930 1.02451 1.01534 0.94223 1.26343 0.90651 0.92394 0.99354 1.75014 1.15350 1.06839 1.18729 1.78712 1.15931 1.00808 1.15830 1.78807 0.96465 1.17875 1.16595 1.48819 1.15599 1.03703 1.41905 1.23040 0.73748 1.08381 1.02997 0.91453 0.90416 0.89762 0.91233 0.92523 0.74732 0.88320 0.87623 0.91938 0.92135 0.92206 0.89406 0.90781 0.88304 0.92524 0.86456 0.84388 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.35 71.98 0.60 -0.77 16 2 C 0.08 1.18 2.29 44.91 0.10 1.28 16 3 H 0.06 1.23 6.59 -2.39 -0.02 1.21 16 4 C 0.13 3.07 4.83 86.38 0.42 3.49 16 5 N -0.70 -20.98 5.39 -463.06 -2.50 -23.48 16 6 C 0.53 21.72 7.85 87.66 0.69 22.41 16 7 O -0.57 -27.70 15.86 -3.04 -0.05 -27.74 16 8 C -0.13 -5.71 6.16 71.24 0.44 -5.27 16 9 S -0.14 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.55 -32.98 9.50 67.96 0.65 -32.34 16 11 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 12 C 0.01 0.85 5.49 84.86 0.47 1.31 16 13 N -0.91 -57.54 13.22 21.65 0.29 -57.26 16 14 Si 1.00 45.49 29.55 68.60 2.03 47.51 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 18 N -0.53 -6.78 4.02 -876.22 -3.52 -10.30 16 19 C 0.02 0.17 8.31 127.69 1.06 1.23 16 20 C 0.17 1.36 2.10 44.17 0.09 1.45 16 21 H 0.11 0.01 5.63 -2.39 -0.01 -0.01 16 22 C -0.14 -0.95 8.68 71.98 0.62 -0.32 16 23 C 0.19 2.90 5.23 138.13 0.72 3.62 16 24 N -0.31 -7.76 12.21 -50.45 -0.62 -8.38 16 25 N -0.12 -3.35 13.43 37.01 0.50 -2.86 16 26 N -0.11 -2.41 13.29 37.02 0.49 -1.92 16 27 N -0.30 -3.67 3.75 -359.66 -1.35 -5.02 16 28 C 0.06 -0.05 11.05 127.77 1.41 1.36 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.54 6.78 -2.38 -0.02 0.52 16 31 H 0.08 0.16 6.49 -2.39 -0.02 0.15 16 32 H 0.07 1.64 6.69 -2.39 -0.02 1.63 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.42 11.65 8.14 -92.71 -0.75 10.89 16 35 H 0.10 4.17 8.14 -2.40 -0.02 4.15 16 36 H 0.11 4.32 8.14 -2.40 -0.02 4.30 16 37 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 38 H 0.06 0.26 6.59 -2.38 -0.02 0.25 16 39 H 0.06 0.89 6.38 -2.39 -0.02 0.87 16 40 H 0.09 0.68 6.43 -2.39 -0.02 0.66 16 41 H 0.07 0.32 8.14 -2.38 -0.02 0.31 16 42 H 0.10 0.23 6.76 -2.39 -0.02 0.21 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.14 -1.07 7.40 -2.39 -0.02 -1.08 16 46 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: -1.00 -90.49 387.58 1.64 -88.84 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.26 Total: 12.71 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 7.27 Total: -2.54 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -6.71 Total: -109.21 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -90.49 1.64 -88.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329387213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.954 kcal (2) G-P(sol) polarization free energy of solvation -90.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds