Wall clock time and date at job start Wed Apr 1 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47094 * 2 1 4 4 C 1.34228 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00359 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.51053 * 55.10574 * 6 4 3 8 8 C 1.53295 * 109.51400 * 295.00459 * 6 4 3 9 9 N 1.47144 * 108.38523 * 187.72520 * 8 6 4 10 10 C 1.34779 * 120.98231 * 230.51491 * 9 8 6 11 11 O 1.21352 * 119.99548 * 7.92345 * 10 9 8 12 12 C 1.49452 * 120.00199 * 187.93320 * 10 9 8 13 13 O 1.21346 * 119.99956 * 6.66441 * 12 10 9 14 14 N 1.34779 * 119.99871 * 186.66714 * 12 10 9 15 15 C 1.46495 * 119.99720 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47068 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47225 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47241 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00126 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00018 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99762 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47359 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47119 * 119.99756 * 22 20 18 25 25 H 1.48500 * 109.46885 * 239.99644 * 22 20 18 26 26 C 1.47152 * 118.03971 * 50.77756 * 9 8 6 27 27 C 1.53706 * 108.16540 * 309.16575 * 26 9 8 28 28 O 1.42957 * 109.55248 * 175.22811 * 6 4 3 29 29 H 1.09005 * 109.47068 * 300.00321 * 1 2 3 30 30 H 1.08997 * 109.47020 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46844 * 239.99545 * 2 1 3 33 33 H 1.09000 * 109.46582 * 119.99761 * 2 1 3 34 34 H 1.08990 * 109.68219 * 67.99372 * 8 6 4 35 35 H 1.09003 * 109.70797 * 307.46183 * 8 6 4 36 36 H 0.96999 * 120.00111 * 359.97438 * 14 12 10 37 37 H 1.09000 * 109.47457 * 59.99982 * 15 14 12 38 38 H 1.09000 * 109.47018 * 299.99556 * 15 14 12 39 39 H 1.09000 * 109.46993 * 299.99761 * 16 15 14 40 40 H 1.09000 * 109.46841 * 59.99795 * 16 15 14 41 41 H 1.09000 * 109.47161 * 299.99929 * 17 16 15 42 42 H 1.09000 * 109.47157 * 60.00260 * 17 16 15 43 43 H 0.97000 * 120.00461 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.67701 * 68.94249 * 26 9 8 45 45 H 1.09006 * 109.68628 * 189.49106 * 26 9 8 46 46 H 1.09004 * 109.65653 * 292.56940 * 27 26 9 47 47 H 1.09001 * 109.44869 * 172.37084 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5164 3.4989 0.8421 8 6 3.5528 3.6432 -1.3101 9 7 4.2775 4.9225 -1.3674 10 6 3.6316 6.0743 -1.6373 11 8 2.4196 6.0910 -1.6952 12 6 4.4081 7.3307 -1.8656 13 8 5.6193 7.2925 -1.9282 14 7 3.7629 8.5062 -2.0019 15 6 4.5240 9.7377 -2.2262 16 6 3.5590 10.9190 -2.3459 17 6 4.3539 12.2052 -2.5795 18 6 3.4035 13.3688 -2.6967 19 1 2.3389 13.2071 -2.6134 20 6 3.8929 14.6397 -2.9114 21 7 5.1892 14.8368 -3.0134 22 14 2.7147 16.0820 -3.0575 23 1 1.3188 15.5979 -2.9082 24 1 3.0117 17.0736 -1.9927 25 1 2.8770 16.7209 -4.3881 26 6 5.7291 4.9066 -1.1271 27 6 5.9902 4.1400 0.1793 28 8 5.3441 2.8663 0.1128 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4790 3.8278 -1.3385 35 1 3.8406 3.0200 -2.1568 36 1 2.7947 8.5367 -1.9522 37 1 5.1011 9.6457 -3.1464 38 1 5.2007 9.9043 -1.3881 39 1 2.8827 10.7521 -3.1842 40 1 2.9817 11.0111 -1.4259 41 1 5.0300 12.3719 -1.7409 42 1 4.9315 12.1134 -3.4993 43 1 5.5335 15.7310 -3.1641 44 1 6.2328 4.4083 -1.9554 45 1 6.0972 5.9284 -1.0344 46 1 5.5933 4.7059 1.0221 47 1 7.0632 3.9976 0.3083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335438794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:37 Heat of formation + Delta-G solvation = -188.075220 kcal Electronic energy + Delta-G solvation = -29479.938051 eV Core-core repulsion = 25049.842571 eV Total energy + Delta-G solvation = -4430.095480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48976 -40.81881 -39.36809 -38.40479 -37.04493 -36.06008 -35.00916 -33.40102 -32.84348 -31.78086 -31.33158 -28.87955 -27.36897 -26.20699 -24.36706 -23.91213 -23.05599 -22.04424 -21.28562 -20.89971 -19.86359 -18.54644 -17.83760 -17.60519 -17.21941 -16.94863 -16.54457 -16.48998 -16.22851 -15.93891 -15.60362 -15.14644 -14.97471 -14.62340 -14.47106 -14.33620 -14.08465 -14.03518 -13.48138 -13.34932 -13.23505 -12.89796 -12.44364 -12.35711 -12.19888 -12.05962 -11.93500 -11.87392 -11.59004 -11.33650 -11.04394 -10.96684 -10.90180 -10.82750 -10.73427 -10.60558 -9.97120 -9.71313 -9.38588 -9.19158 -9.12569 -9.07858 -8.42162 -6.06683 -4.09814 1.19957 1.57112 1.73013 2.03464 2.98589 3.18958 3.27503 3.35414 3.39065 3.42988 3.94933 4.09715 4.22281 4.30601 4.41129 4.43046 4.46514 4.49985 4.74102 4.76265 4.84228 5.00598 5.14016 5.16176 5.28352 5.28742 5.29562 5.48739 5.49532 5.57338 5.60465 5.73635 5.89501 5.99490 6.20484 6.39143 6.46517 6.58084 6.66105 6.88719 7.12194 7.23554 7.50467 7.57006 7.67874 7.87719 7.91715 8.32394 8.96853 9.54962 11.04528 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.001711 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.569392 B =16363.901589 C =17386.539263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.473 3.527 5 O -0.480 6.480 6 C 0.090 3.910 7 H 0.105 0.895 8 C 0.089 3.911 9 N -0.591 5.591 10 C 0.514 3.486 11 O -0.513 6.513 12 C 0.504 3.496 13 O -0.517 6.517 14 N -0.686 5.686 15 C 0.112 3.888 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.038 3.962 27 C 0.048 3.952 28 O -0.357 6.357 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.063 0.937 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -29.319 7.074 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.270 6.270 4 C 0.313 3.687 5 O -0.365 6.365 6 C 0.030 3.970 7 H 0.122 0.878 8 C -0.034 4.034 9 N -0.326 5.326 10 C 0.297 3.703 11 O -0.388 6.388 12 C 0.284 3.716 13 O -0.396 6.396 14 N -0.337 5.337 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.084 4.084 27 C -0.029 4.029 28 O -0.275 6.275 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.170 0.830 46 H 0.081 0.919 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.807 -29.653 6.963 30.696 hybrid contribution -1.007 0.833 -0.099 1.311 sum -4.814 -28.820 6.863 30.015 Atomic orbital electron populations 1.21831 0.92141 1.03218 1.03900 1.23125 0.95637 0.79356 1.02920 1.86485 1.23289 1.33224 1.83990 1.22798 0.81130 0.91239 0.73541 1.90711 1.60361 1.42314 1.43145 1.21677 0.84517 0.90636 1.00152 0.87753 1.22185 1.00317 0.84411 0.96480 1.47897 1.09826 1.05838 1.69060 1.20356 0.87614 0.84694 0.77659 1.90774 1.13309 1.85394 1.49310 1.19885 0.87699 0.84803 0.79180 1.90515 1.13483 1.85428 1.50165 1.46123 1.12068 1.06722 1.68741 1.21903 0.95346 0.81610 1.02073 1.21939 0.98108 0.94752 1.01328 1.19037 0.95318 0.89509 0.97496 1.21232 0.93266 0.92135 1.49520 0.92505 1.25023 0.95101 0.99044 0.95257 1.69966 1.11760 1.21978 1.49528 0.86521 0.81207 0.82497 0.77676 1.19731 1.20984 1.20988 1.23671 0.79049 1.07561 0.98078 1.23344 0.99130 0.83466 0.96920 1.88040 1.15517 1.29478 1.94491 0.91266 0.91167 0.89973 0.90885 0.90946 0.86314 0.89468 0.75167 0.90887 0.90860 0.92369 0.92385 0.96164 0.96162 0.92949 0.89850 0.82954 0.91903 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 37.16 0.38 -0.25 16 2 C 0.06 0.39 6.19 37.16 0.23 0.62 16 3 O -0.35 -2.94 10.21 -39.25 -0.40 -3.34 16 4 C 0.47 4.64 7.29 36.01 0.26 4.90 16 5 O -0.48 -6.10 16.26 -25.45 -0.41 -6.51 16 6 C 0.09 0.79 3.30 -27.73 -0.09 0.70 16 7 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 8 C 0.09 0.79 5.92 -3.54 -0.02 0.77 16 9 N -0.59 -6.03 3.01 -172.54 -0.52 -6.55 16 10 C 0.51 6.29 7.75 -11.58 -0.09 6.20 16 11 O -0.51 -7.08 15.97 5.49 0.09 -6.99 16 12 C 0.50 6.74 7.75 -11.58 -0.09 6.65 16 13 O -0.52 -7.53 13.20 5.50 0.07 -7.45 16 14 N -0.69 -9.31 5.55 -60.73 -0.34 -9.65 16 15 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 16 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 17 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 18 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.04 0.34 6.16 -3.32 -0.02 0.32 16 27 C 0.05 0.36 7.00 37.52 0.26 0.63 16 28 O -0.36 -3.54 9.93 -55.09 -0.55 -4.09 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.12 1.05 7.06 -51.93 -0.37 0.69 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.41 5.12 7.96 -40.82 -0.33 4.79 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.15 1.55 4.48 -54.03 -0.24 1.31 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -33.14 396.23 -7.50 -40.64 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.24 Total: 0.03 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.11 Total: 7.28 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.12 Total: -41.63 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.20 Total: -28.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.14 -7.50 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335438794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.439 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds