Wall clock time and date at job start Wed Apr 1 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47094 * 2 1 4 4 C 1.34228 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00359 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.51053 * 55.10574 * 6 4 3 8 8 C 1.53295 * 109.51400 * 295.00459 * 6 4 3 9 9 N 1.47144 * 108.38523 * 187.72520 * 8 6 4 10 10 C 1.34779 * 120.98231 * 230.51491 * 9 8 6 11 11 O 1.21352 * 119.99548 * 7.92345 * 10 9 8 12 12 C 1.49452 * 120.00199 * 187.93320 * 10 9 8 13 13 O 1.21346 * 119.99956 * 6.66441 * 12 10 9 14 14 N 1.34779 * 119.99871 * 186.66714 * 12 10 9 15 15 C 1.46495 * 119.99720 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47068 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47225 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47241 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00126 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00018 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99762 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47359 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47119 * 119.99756 * 22 20 18 25 25 H 1.48500 * 109.46885 * 239.99644 * 22 20 18 26 26 C 1.47152 * 118.03971 * 50.77756 * 9 8 6 27 27 C 1.53706 * 108.16540 * 309.16575 * 26 9 8 28 28 O 1.42957 * 109.55248 * 175.22811 * 6 4 3 29 29 H 1.09005 * 109.47068 * 300.00321 * 1 2 3 30 30 H 1.08997 * 109.47020 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46844 * 239.99545 * 2 1 3 33 33 H 1.09000 * 109.46582 * 119.99761 * 2 1 3 34 34 H 1.08990 * 109.68219 * 67.99372 * 8 6 4 35 35 H 1.09003 * 109.70797 * 307.46183 * 8 6 4 36 36 H 0.96999 * 120.00111 * 359.97438 * 14 12 10 37 37 H 1.09000 * 109.47457 * 59.99982 * 15 14 12 38 38 H 1.09000 * 109.47018 * 299.99556 * 15 14 12 39 39 H 1.09000 * 109.46993 * 299.99761 * 16 15 14 40 40 H 1.09000 * 109.46841 * 59.99795 * 16 15 14 41 41 H 1.09000 * 109.47161 * 299.99929 * 17 16 15 42 42 H 1.09000 * 109.47157 * 60.00260 * 17 16 15 43 43 H 0.97000 * 120.00461 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.67701 * 68.94249 * 26 9 8 45 45 H 1.09006 * 109.68628 * 189.49106 * 26 9 8 46 46 H 1.09004 * 109.65653 * 292.56940 * 27 26 9 47 47 H 1.09001 * 109.44869 * 172.37084 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5164 3.4989 0.8421 8 6 3.5528 3.6432 -1.3101 9 7 4.2775 4.9225 -1.3674 10 6 3.6316 6.0743 -1.6373 11 8 2.4196 6.0910 -1.6952 12 6 4.4081 7.3307 -1.8656 13 8 5.6193 7.2925 -1.9282 14 7 3.7629 8.5062 -2.0019 15 6 4.5240 9.7377 -2.2262 16 6 3.5590 10.9190 -2.3459 17 6 4.3539 12.2052 -2.5795 18 6 3.4035 13.3688 -2.6967 19 1 2.3389 13.2071 -2.6134 20 6 3.8929 14.6397 -2.9114 21 7 5.1892 14.8368 -3.0134 22 14 2.7147 16.0820 -3.0575 23 1 1.3188 15.5979 -2.9082 24 1 3.0117 17.0736 -1.9927 25 1 2.8770 16.7209 -4.3881 26 6 5.7291 4.9066 -1.1271 27 6 5.9902 4.1400 0.1793 28 8 5.3441 2.8663 0.1128 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4790 3.8278 -1.3385 35 1 3.8406 3.0200 -2.1568 36 1 2.7947 8.5367 -1.9522 37 1 5.1011 9.6457 -3.1464 38 1 5.2007 9.9043 -1.3881 39 1 2.8827 10.7521 -3.1842 40 1 2.9817 11.0111 -1.4259 41 1 5.0300 12.3719 -1.7409 42 1 4.9315 12.1134 -3.4993 43 1 5.5335 15.7310 -3.1641 44 1 6.2328 4.4083 -1.9554 45 1 6.0972 5.9284 -1.0344 46 1 5.5933 4.7059 1.0221 47 1 7.0632 3.9976 0.3083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335438794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:36 Heat of formation + Delta-G solvation = -210.420638 kcal Electronic energy + Delta-G solvation = -29480.907021 eV Core-core repulsion = 25049.842571 eV Total energy + Delta-G solvation = -4431.064450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34335 -41.67379 -40.24026 -39.35286 -37.80107 -37.28221 -36.05703 -35.14550 -33.48165 -33.04877 -32.30038 -29.72581 -28.87666 -27.20002 -25.62057 -24.62635 -24.06591 -23.00787 -22.37683 -22.02242 -20.98033 -19.35465 -18.74909 -18.52321 -18.41816 -17.92167 -17.75850 -17.39978 -17.13321 -16.90167 -16.48582 -16.42857 -16.17793 -16.01206 -15.34071 -15.17682 -15.08890 -14.96531 -14.42030 -14.28900 -14.01632 -13.81669 -13.70117 -13.64547 -13.46019 -13.00589 -12.83530 -12.77769 -12.57404 -12.53721 -12.46546 -12.35830 -12.08186 -11.72232 -11.68136 -11.59659 -11.50760 -11.45633 -11.18873 -10.54260 -10.49411 -10.25225 -9.95034 -8.18669 -6.29110 0.18362 0.77831 1.05455 1.17071 1.42204 1.43305 1.55674 1.96544 2.22140 2.43250 2.78069 3.14249 3.15616 3.29556 3.44170 3.65108 3.82394 3.99368 4.03633 4.09009 4.12256 4.13927 4.20995 4.30886 4.33523 4.44999 4.54984 4.66247 4.77508 4.80114 4.92185 4.93382 4.94072 5.00194 5.09224 5.17355 5.30752 5.35089 5.53667 5.68925 5.73061 5.76881 5.86250 6.07634 6.25040 6.51414 6.52100 6.82021 6.88335 7.40380 8.93176 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.001711 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.569392 B =16363.901589 C =17386.539263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.478 3.522 5 O -0.514 6.514 6 C 0.093 3.907 7 H 0.121 0.879 8 C 0.092 3.908 9 N -0.584 5.584 10 C 0.519 3.481 11 O -0.530 6.530 12 C 0.506 3.494 13 O -0.530 6.530 14 N -0.682 5.682 15 C 0.128 3.872 16 C -0.107 4.107 17 C 0.024 3.976 18 C -0.541 4.541 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.281 1.281 26 C 0.038 3.962 27 C 0.051 3.949 28 O -0.374 6.374 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.419 0.581 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.067 0.933 41 H -0.002 1.002 42 H -0.003 1.003 43 H 0.263 0.737 44 H 0.087 0.913 45 H 0.144 0.856 46 H 0.073 0.927 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -30.084 7.554 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.320 3.680 5 O -0.401 6.401 6 C 0.033 3.967 7 H 0.138 0.862 8 C -0.031 4.031 9 N -0.319 5.319 10 C 0.302 3.698 11 O -0.407 6.407 12 C 0.287 3.713 13 O -0.409 6.409 14 N -0.334 5.334 15 C 0.005 3.995 16 C -0.145 4.145 17 C -0.014 4.014 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.788 3.212 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.207 1.207 26 C -0.083 4.083 27 C -0.026 4.026 28 O -0.293 6.293 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.257 0.743 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.161 0.839 46 H 0.091 0.909 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.261 -30.447 7.451 31.784 hybrid contribution -0.530 0.993 -0.242 1.151 sum -5.791 -29.454 7.209 30.871 Atomic orbital electron populations 1.21852 0.90338 1.04513 1.03851 1.23395 0.97031 0.78389 1.03061 1.86496 1.22447 1.34557 1.83431 1.22979 0.81332 0.91207 0.72483 1.90696 1.61147 1.43371 1.44935 1.21724 0.84284 0.90174 1.00540 0.86180 1.22244 1.00277 0.83646 0.96902 1.47950 1.10429 1.05685 1.67805 1.20024 0.87196 0.84693 0.77917 1.90771 1.13778 1.85591 1.50527 1.20085 0.87579 0.85041 0.78617 1.90534 1.14095 1.85755 1.50482 1.45912 1.12305 1.06147 1.69000 1.21509 0.94589 0.81727 1.01699 1.21645 0.97826 0.92965 1.02062 1.18941 0.95046 0.91970 0.95414 1.21720 0.94065 0.93251 1.48917 0.91821 1.25948 0.96746 1.02179 0.94968 1.70093 1.13728 1.22729 1.50683 0.85424 0.79358 0.78780 0.77623 1.18491 1.20577 1.20659 1.23686 0.78181 1.07214 0.99187 1.23472 1.00258 0.82596 0.96227 1.88033 1.16026 1.30698 1.94520 0.91211 0.91254 0.88014 0.90826 0.90833 0.86111 0.88891 0.74303 0.91585 0.91151 0.91605 0.91385 0.98335 0.98502 0.92835 0.89444 0.83935 0.90923 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.29 71.98 0.74 -0.25 16 2 C 0.05 0.63 6.19 71.98 0.45 1.07 16 3 O -0.35 -5.52 10.21 -51.40 -0.53 -6.04 16 4 C 0.48 8.97 7.29 71.24 0.52 9.49 16 5 O -0.51 -12.86 16.26 28.36 0.46 -12.40 16 6 C 0.09 1.50 3.30 29.95 0.10 1.60 16 7 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 8 C 0.09 1.50 5.92 86.36 0.51 2.01 16 9 N -0.58 -11.07 3.01 -818.14 -2.47 -13.54 16 10 C 0.52 12.02 7.75 87.27 0.68 12.69 16 11 O -0.53 -13.88 15.97 -3.25 -0.05 -13.94 16 12 C 0.51 12.99 7.75 87.27 0.68 13.66 16 13 O -0.53 -14.96 13.20 -3.23 -0.04 -15.01 16 14 N -0.68 -17.74 5.55 -464.41 -2.58 -20.32 16 15 C 0.13 3.96 5.67 86.38 0.49 4.45 16 16 C -0.11 -3.88 5.27 30.59 0.16 -3.72 16 17 C 0.02 1.19 4.97 29.85 0.15 1.33 16 18 C -0.54 -29.48 9.11 25.60 0.23 -29.24 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 21 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 22 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.04 0.63 6.16 86.49 0.53 1.16 16 27 C 0.05 0.67 7.00 72.22 0.51 1.18 16 28 O -0.37 -6.87 9.93 -129.99 -1.29 -8.16 16 29 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 34 H 0.12 1.96 7.06 -2.39 -0.02 1.95 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.42 9.79 7.96 -92.71 -0.74 9.05 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.14 2.74 4.48 -35.64 -0.16 2.58 16 46 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.61 396.23 2.12 -68.49 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.10 Total: 15.00 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.20 Total: 15.86 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -4.76 Total: -88.98 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.45 Total: -55.54 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.61 2.12 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335438794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.935 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds