Wall clock time and date at job start Wed Apr 1 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47015 * 2 1 4 4 C 1.46503 * 119.99940 * 269.99991 * 3 2 1 5 5 C 1.50700 * 109.46771 * 269.99934 * 4 3 2 6 6 H 1.07998 * 120.00439 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99675 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99706 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46975 * 90.00710 * 9 7 5 11 11 H 1.48506 * 109.47091 * 210.00021 * 9 7 5 12 12 H 1.48493 * 109.47171 * 330.00514 * 9 7 5 13 13 C 1.34774 * 120.00198 * 89.99795 * 3 2 1 14 14 O 1.21290 * 120.00292 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99997 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.48564 * 110.99825 * 170.00157 * 16 15 13 18 18 C 1.54383 * 104.59268 * 200.96819 * 17 16 15 19 19 H 1.09003 * 110.32026 * 264.85533 * 18 17 16 20 20 C 1.50698 * 110.32387 * 142.75124 * 18 17 16 21 21 O 1.20823 * 120.00115 * 329.68832 * 20 18 17 22 22 O 1.34235 * 119.99884 * 149.68638 * 20 18 17 23 23 C 1.45202 * 116.99566 * 179.97438 * 22 20 18 24 24 C 1.54256 * 105.15371 * 23.79800 * 18 17 16 25 25 H 1.08997 * 110.32932 * 241.15898 * 24 18 17 26 26 C 1.50701 * 110.32409 * 118.94955 * 24 18 17 27 27 O 1.20825 * 119.99801 * 271.96428 * 26 24 18 28 28 O 1.34226 * 120.00036 * 91.95998 * 26 24 18 29 29 C 1.48565 * 110.99842 * 54.58866 * 16 15 13 30 30 H 1.08996 * 109.47489 * 299.99764 * 1 2 3 31 31 H 1.08997 * 109.47199 * 60.00114 * 1 2 3 32 32 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47489 * 240.00236 * 2 1 3 34 34 H 1.09005 * 109.47506 * 119.99730 * 2 1 3 35 35 H 1.08995 * 109.47214 * 29.99923 * 4 3 2 36 36 H 1.09001 * 109.46961 * 149.99801 * 4 3 2 37 37 H 0.97001 * 119.99437 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.46879 * 60.00091 * 15 13 3 39 39 H 1.08998 * 109.47376 * 300.00474 * 15 13 3 40 40 H 1.08994 * 110.41048 * 82.18469 * 17 16 15 41 41 H 1.09003 * 110.51021 * 319.78903 * 17 16 15 42 42 H 1.08993 * 109.47045 * 60.00463 * 23 22 20 43 43 H 1.08994 * 109.47449 * 299.99798 * 23 22 20 44 44 H 1.09006 * 109.46523 * 180.02562 * 23 22 20 45 45 H 0.96696 * 117.00091 * 180.02562 * 28 26 24 46 46 H 1.09005 * 110.40692 * 277.81713 * 29 16 15 47 47 H 1.08999 * 110.41116 * 40.13378 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 5.3913 2.1834 -3.2573 9 14 3.0130 3.4360 -3.9287 10 1 3.1158 4.8561 -3.5069 11 1 3.4067 3.3137 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9911 1.3064 2.4723 16 7 2.3100 2.2062 3.5888 17 6 1.8517 1.6343 4.8811 18 6 1.7486 2.8484 5.8291 19 1 2.6640 2.9527 6.4115 20 6 0.5610 2.6982 6.7446 21 8 -0.4178 2.0967 6.3706 22 8 0.5908 3.2326 7.9756 23 6 -0.5886 3.0492 8.8025 24 6 1.5607 4.0679 4.9034 25 1 2.3847 4.7700 5.0301 26 6 0.2456 4.7454 5.1907 27 8 -0.7575 4.3828 4.6230 28 8 0.1885 5.7516 6.0773 29 6 1.5641 3.4857 3.4712 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 5.7174 2.5739 -4.0832 38 1 2.6210 0.4187 2.5303 39 1 0.9431 1.0126 2.5298 40 1 2.5805 0.9174 5.2592 41 1 0.8776 1.1593 4.7645 42 1 -0.7670 1.9841 8.9498 43 1 -1.4513 3.4973 8.3095 44 1 -0.4330 3.5291 9.7688 45 1 -0.6772 6.1548 6.2286 46 1 2.0765 4.1629 2.7876 47 1 0.5453 3.3018 3.1302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605438349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:51 Heat of formation + Delta-G solvation = -182.351715 kcal Electronic energy + Delta-G solvation = -31579.495339 eV Core-core repulsion = 27149.648049 eV Total energy + Delta-G solvation = -4429.847290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67305 -40.17189 -39.58026 -38.10487 -36.70213 -36.32772 -35.39152 -33.17401 -32.56968 -30.36259 -29.86617 -28.73180 -27.92502 -26.44741 -24.25796 -23.06265 -22.97621 -21.83029 -21.17260 -20.20679 -18.81175 -18.35477 -17.94732 -17.30281 -17.12082 -16.90621 -16.55062 -16.12879 -15.79165 -15.55651 -15.43069 -15.07488 -14.47687 -14.12339 -13.92260 -13.62019 -13.52944 -13.46240 -13.24401 -13.03160 -12.67086 -12.53331 -12.44330 -12.12026 -12.01552 -11.97563 -11.87594 -11.69980 -11.48149 -11.29133 -11.26322 -11.17318 -10.99553 -10.93886 -10.70350 -10.58616 -10.49177 -10.13894 -9.51756 -8.99820 -8.57593 -8.51492 -7.72101 -6.07218 -4.05706 1.68081 1.84163 2.18070 2.71039 3.29782 3.29958 3.35833 3.37962 3.58406 3.92254 4.08745 4.20211 4.40763 4.41335 4.71690 4.74390 4.79014 4.81675 4.94680 5.04049 5.10506 5.13833 5.22271 5.26535 5.29507 5.43512 5.51712 5.54313 5.57146 5.70328 5.78859 5.94518 5.97818 6.08948 6.16088 6.18992 6.39714 6.61321 6.63699 6.79994 6.96080 7.32168 7.34922 7.58697 7.62353 8.23587 8.48364 8.93368 8.99066 9.53134 11.06173 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.002789 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.378011 B =10037.190160 C =10488.168083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.527 6.527 15 C 0.025 3.975 16 N -0.482 5.482 17 C 0.038 3.962 18 C -0.072 4.072 19 H 0.130 0.870 20 C 0.453 3.547 21 O -0.485 6.485 22 O -0.350 6.350 23 C 0.035 3.965 24 C -0.075 4.075 25 H 0.131 0.869 26 C 0.470 3.530 27 O -0.492 6.492 28 O -0.509 6.509 29 C 0.039 3.961 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.408 0.592 46 H 0.130 0.870 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.681 -0.237 23.263 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.404 6.404 15 C -0.106 4.106 16 N -0.206 5.206 17 C -0.090 4.090 18 C -0.092 4.092 19 H 0.148 0.852 20 C 0.294 3.706 21 O -0.371 6.371 22 O -0.267 6.267 23 C -0.059 4.059 24 C -0.095 4.095 25 H 0.149 0.851 26 C 0.311 3.689 27 O -0.378 6.378 28 O -0.321 6.321 29 C -0.088 4.088 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.267 0.733 46 H 0.148 0.852 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.976 0.012 22.738 25.249 hybrid contribution -2.132 0.503 -0.429 2.232 sum -13.108 0.515 22.309 25.880 Atomic orbital electron populations 1.22241 0.96763 1.01658 1.02245 1.21464 0.93365 0.83821 1.03213 1.47913 1.64062 1.13432 1.06925 1.19647 0.97352 0.93343 0.79972 1.21322 0.95264 1.32845 1.07083 0.90684 1.24853 0.94967 0.95821 0.97358 1.69900 1.15123 1.45011 1.23551 0.86865 0.81469 0.81634 0.79785 1.19931 1.21114 1.19132 1.20040 0.78516 0.87011 0.84782 1.90595 1.45200 1.17949 1.86675 1.22343 1.01122 0.96897 0.90199 1.65388 1.51935 1.02991 1.00287 1.23271 1.01639 0.94681 0.89431 1.21753 0.96502 0.96556 0.94420 0.85187 1.23599 0.89287 0.76188 0.81535 1.90724 1.33921 1.37904 1.74571 1.86547 1.42944 1.71262 1.25921 1.23296 0.86047 1.02664 0.93887 1.21893 0.93998 0.96094 0.97475 0.85105 1.23315 0.91685 0.77762 0.76184 1.90769 1.36988 1.62051 1.47958 1.84565 1.41164 1.47627 1.58700 1.23557 0.99238 0.93399 0.92627 0.93075 0.92172 0.91896 0.89559 0.91387 0.95288 0.94612 0.92592 0.87449 0.91693 0.88186 0.91231 0.91751 0.92049 0.87808 0.73305 0.85241 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.51 10.10 7.39 -10.99 -0.08 10.02 16 14 O -0.53 -12.31 13.24 5.55 0.07 -12.23 16 15 C 0.03 0.37 4.10 -4.97 -0.02 0.35 16 16 N -0.48 -6.77 5.34 -231.25 -1.23 -8.01 16 17 C 0.04 0.42 5.99 -2.18 -0.01 0.40 16 18 C -0.07 -0.73 3.55 -90.39 -0.32 -1.05 16 19 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 20 C 0.45 5.13 5.16 36.00 0.19 5.31 16 21 O -0.49 -6.87 14.96 -21.21 -0.32 -7.19 16 22 O -0.35 -3.35 10.57 -39.27 -0.41 -3.77 16 23 C 0.03 0.24 10.56 101.05 1.07 1.31 16 24 C -0.07 -0.86 3.57 -90.27 -0.32 -1.18 16 25 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 26 C 0.47 5.79 5.50 36.01 0.20 5.98 16 27 O -0.49 -7.69 15.96 -21.21 -0.34 -8.03 16 28 O -0.51 -4.63 13.42 -39.25 -0.53 -5.16 16 29 C 0.04 0.58 4.81 -2.06 -0.01 0.57 16 30 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 38 H 0.11 1.38 7.40 -51.93 -0.38 1.00 16 39 H 0.07 0.86 6.92 -51.93 -0.36 0.50 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 42 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 43 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.41 2.10 9.10 45.56 0.41 2.51 16 46 H 0.13 2.21 6.05 -51.93 -0.31 1.90 16 47 H 0.06 1.06 6.73 -51.93 -0.35 0.71 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -37.94 384.53 -6.87 -44.81 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.16 Total: 2.67 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 0.58 Total: 13.37 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.89 Total: -47.19 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.52 Total: -36.37 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.94 -6.87 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.540 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds