Wall clock time and date at job start Wed Apr 1 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47015 * 2 1 4 4 C 1.46503 * 119.99940 * 269.99991 * 3 2 1 5 5 C 1.50700 * 109.46771 * 269.99934 * 4 3 2 6 6 H 1.07998 * 120.00439 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99675 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99706 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46975 * 90.00710 * 9 7 5 11 11 H 1.48506 * 109.47091 * 210.00021 * 9 7 5 12 12 H 1.48493 * 109.47171 * 330.00514 * 9 7 5 13 13 C 1.34774 * 120.00198 * 89.99795 * 3 2 1 14 14 O 1.21290 * 120.00292 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99997 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.48564 * 110.99825 * 170.00157 * 16 15 13 18 18 C 1.54383 * 104.59268 * 200.96819 * 17 16 15 19 19 H 1.09003 * 110.32026 * 264.85533 * 18 17 16 20 20 C 1.50698 * 110.32387 * 142.75124 * 18 17 16 21 21 O 1.20823 * 120.00115 * 329.68832 * 20 18 17 22 22 O 1.34235 * 119.99884 * 149.68638 * 20 18 17 23 23 C 1.45202 * 116.99566 * 179.97438 * 22 20 18 24 24 C 1.54256 * 105.15371 * 23.79800 * 18 17 16 25 25 H 1.08997 * 110.32932 * 241.15898 * 24 18 17 26 26 C 1.50701 * 110.32409 * 118.94955 * 24 18 17 27 27 O 1.20825 * 119.99801 * 271.96428 * 26 24 18 28 28 O 1.34226 * 120.00036 * 91.95998 * 26 24 18 29 29 C 1.48565 * 110.99842 * 54.58866 * 16 15 13 30 30 H 1.08996 * 109.47489 * 299.99764 * 1 2 3 31 31 H 1.08997 * 109.47199 * 60.00114 * 1 2 3 32 32 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47489 * 240.00236 * 2 1 3 34 34 H 1.09005 * 109.47506 * 119.99730 * 2 1 3 35 35 H 1.08995 * 109.47214 * 29.99923 * 4 3 2 36 36 H 1.09001 * 109.46961 * 149.99801 * 4 3 2 37 37 H 0.97001 * 119.99437 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.46879 * 60.00091 * 15 13 3 39 39 H 1.08998 * 109.47376 * 300.00474 * 15 13 3 40 40 H 1.08994 * 110.41048 * 82.18469 * 17 16 15 41 41 H 1.09003 * 110.51021 * 319.78903 * 17 16 15 42 42 H 1.08993 * 109.47045 * 60.00463 * 23 22 20 43 43 H 1.08994 * 109.47449 * 299.99798 * 23 22 20 44 44 H 1.09006 * 109.46523 * 180.02562 * 23 22 20 45 45 H 0.96696 * 117.00091 * 180.02562 * 28 26 24 46 46 H 1.09005 * 110.40692 * 277.81713 * 29 16 15 47 47 H 1.08999 * 110.41116 * 40.13378 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 5.3913 2.1834 -3.2573 9 14 3.0130 3.4360 -3.9287 10 1 3.1158 4.8561 -3.5069 11 1 3.4067 3.3137 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9911 1.3064 2.4723 16 7 2.3100 2.2062 3.5888 17 6 1.8517 1.6343 4.8811 18 6 1.7486 2.8484 5.8291 19 1 2.6640 2.9527 6.4115 20 6 0.5610 2.6982 6.7446 21 8 -0.4178 2.0967 6.3706 22 8 0.5908 3.2326 7.9756 23 6 -0.5886 3.0492 8.8025 24 6 1.5607 4.0679 4.9034 25 1 2.3847 4.7700 5.0301 26 6 0.2456 4.7454 5.1907 27 8 -0.7575 4.3828 4.6230 28 8 0.1885 5.7516 6.0773 29 6 1.5641 3.4857 3.4712 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 5.7174 2.5739 -4.0832 38 1 2.6210 0.4187 2.5303 39 1 0.9431 1.0126 2.5298 40 1 2.5805 0.9174 5.2592 41 1 0.8776 1.1593 4.7645 42 1 -0.7670 1.9841 8.9498 43 1 -1.4513 3.4973 8.3095 44 1 -0.4330 3.5291 9.7688 45 1 -0.6772 6.1548 6.2286 46 1 2.0765 4.1629 2.7876 47 1 0.5453 3.3018 3.1302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:50 Heat of formation + Delta-G solvation = -212.123914 kcal Electronic energy + Delta-G solvation = -31580.786359 eV Core-core repulsion = 27149.648049 eV Total energy + Delta-G solvation = -4431.138309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58133 -41.08353 -40.93177 -39.19445 -37.57094 -37.24331 -36.93626 -34.90005 -34.04187 -31.88765 -30.79714 -30.14776 -28.82491 -27.78539 -25.24469 -24.53756 -24.21481 -23.14896 -22.19766 -21.07757 -19.95210 -19.56387 -19.08160 -18.83288 -18.20897 -18.07706 -17.83332 -17.14584 -16.97852 -16.69564 -16.48454 -16.29571 -16.14691 -15.30066 -15.18654 -14.74446 -14.61544 -14.54325 -14.41009 -14.24504 -14.13746 -13.77899 -13.62975 -13.35705 -13.16938 -13.12005 -12.97802 -12.83972 -12.68658 -12.58370 -12.47883 -12.37681 -12.20287 -12.02657 -11.93587 -11.88352 -11.87659 -11.71702 -11.49397 -10.81738 -10.51930 -9.67302 -9.37413 -8.32454 -6.36610 0.80941 0.93449 1.32421 1.36113 1.41286 1.44356 1.78420 1.90268 2.20143 2.31306 2.98126 3.01844 3.04623 3.26496 3.62619 3.65870 3.91019 4.05342 4.07677 4.12540 4.19102 4.24072 4.26575 4.28640 4.37688 4.40175 4.57334 4.61848 4.66034 4.73062 4.75932 4.79499 4.88629 4.92393 4.98848 4.99743 5.19866 5.34604 5.39570 5.47483 5.53775 5.63713 5.71515 6.26262 6.52539 6.64734 6.71080 6.78111 7.23536 7.43459 8.84417 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.002789 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.378011 B =10037.190160 C =10488.168083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.032 0.968 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.242 1.242 13 C 0.498 3.502 14 O -0.573 6.573 15 C 0.037 3.963 16 N -0.492 5.492 17 C 0.041 3.959 18 C -0.069 4.069 19 H 0.166 0.834 20 C 0.456 3.544 21 O -0.519 6.519 22 O -0.349 6.349 23 C 0.028 3.972 24 C -0.073 4.073 25 H 0.154 0.846 26 C 0.474 3.526 27 O -0.532 6.532 28 O -0.497 6.497 29 C 0.044 3.956 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.137 0.863 45 H 0.427 0.573 46 H 0.099 0.901 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 -0.657 25.289 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.105 3.895 5 C -0.569 4.569 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.165 1.165 13 C 0.287 3.713 14 O -0.452 6.452 15 C -0.094 4.094 16 N -0.216 5.216 17 C -0.087 4.087 18 C -0.088 4.088 19 H 0.183 0.817 20 C 0.299 3.701 21 O -0.407 6.407 22 O -0.264 6.264 23 C -0.065 4.065 24 C -0.093 4.093 25 H 0.172 0.828 26 C 0.316 3.684 27 O -0.421 6.421 28 O -0.310 6.310 29 C -0.084 4.084 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.155 0.845 45 H 0.288 0.712 46 H 0.117 0.883 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.282 -0.429 24.820 27.696 hybrid contribution -1.695 0.638 -0.929 2.035 sum -13.977 0.208 23.891 27.680 Atomic orbital electron populations 1.22161 0.94517 1.03594 1.01673 1.21779 0.95138 0.81226 1.04260 1.48036 1.64209 1.15222 1.05768 1.19271 0.94879 0.92919 0.82467 1.21532 0.96888 1.31914 1.06592 0.95001 1.25798 0.96614 0.97204 0.98940 1.70046 1.17306 1.46603 1.24470 0.85763 0.80408 0.79128 0.77929 1.20224 1.20012 1.16534 1.21005 0.77301 0.86767 0.86248 1.90579 1.47075 1.20048 1.87532 1.22285 1.02687 0.96844 0.87542 1.65381 1.52114 1.02840 1.01299 1.23358 1.01912 0.95441 0.87944 1.21860 0.97604 0.95168 0.94179 0.81679 1.23765 0.88923 0.75467 0.81988 1.90716 1.35179 1.39540 1.75284 1.86540 1.43962 1.70636 1.25288 1.23582 0.85065 1.03211 0.94684 1.21883 0.94478 0.97163 0.95783 0.82841 1.23433 0.91330 0.77776 0.75813 1.90759 1.38328 1.63427 1.49611 1.84518 1.42651 1.46475 1.57371 1.23265 0.97307 0.93637 0.94183 0.92857 0.93533 0.88638 0.90588 0.88332 0.93705 0.96519 0.92314 0.85045 0.89853 0.85209 0.92269 0.91660 0.92746 0.84504 0.71180 0.88328 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.98 0.74 -3.07 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.32 2.46 -826.15 -2.03 -26.35 16 4 C 0.23 11.15 4.23 85.63 0.36 11.52 16 5 C -0.53 -31.26 9.94 25.60 0.25 -31.00 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 7 C 0.01 0.74 5.47 84.65 0.46 1.20 16 8 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 9 Si 0.94 45.00 27.47 68.60 1.88 46.88 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.50 19.98 7.39 87.66 0.65 20.63 16 14 O -0.57 -27.81 13.24 -3.06 -0.04 -27.85 16 15 C 0.04 1.04 4.10 85.56 0.35 1.39 16 16 N -0.49 -13.31 5.34 -885.53 -4.73 -18.03 16 17 C 0.04 0.80 5.99 86.45 0.52 1.32 16 18 C -0.07 -1.22 3.55 -10.65 -0.04 -1.26 16 19 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 20 C 0.46 9.42 5.16 71.24 0.37 9.78 16 21 O -0.52 -14.15 14.96 24.33 0.36 -13.78 16 22 O -0.35 -5.77 10.57 -51.46 -0.54 -6.31 16 23 C 0.03 0.32 10.56 113.37 1.20 1.51 16 24 C -0.07 -1.60 3.57 -10.57 -0.04 -1.64 16 25 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 26 C 0.47 11.28 5.50 71.24 0.39 11.67 16 27 O -0.53 -16.76 15.96 24.32 0.39 -16.38 16 28 O -0.50 -8.13 13.42 -51.37 -0.69 -8.82 16 29 C 0.04 1.31 4.81 86.53 0.42 1.73 16 30 H 0.05 1.24 7.22 -2.39 -0.02 1.22 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.10 2.26 6.44 -2.38 -0.02 2.24 16 35 H 0.05 2.05 7.13 -2.39 -0.02 2.04 16 36 H 0.02 0.89 6.85 -2.39 -0.02 0.87 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.13 3.05 7.40 -2.39 -0.02 3.04 16 39 H 0.08 2.06 6.92 -2.39 -0.02 2.04 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.33 6.58 -2.39 -0.02 1.31 16 42 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 43 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 44 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.43 3.61 9.10 -74.06 -0.67 2.94 16 46 H 0.10 3.56 6.05 -2.38 -0.01 3.54 16 47 H 0.04 1.38 6.73 -2.39 -0.02 1.37 16 Total: -1.00 -87.50 384.53 1.32 -86.18 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.28 Total: 16.83 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 6.14 Total: 27.18 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -6.45 Total: -103.93 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -0.52 Total: -73.14 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -87.50 1.32 -86.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.944 kcal (2) G-P(sol) polarization free energy of solvation -87.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds