Wall clock time and date at job start Wed Apr 1 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00547 * 2 1 4 4 O 1.20831 * 119.99291 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00544 * 179.97438 * 3 2 1 6 6 C 1.53038 * 109.46278 * 179.97438 * 5 3 2 7 7 C 1.53186 * 109.31130 * 181.37200 * 6 5 3 8 8 N 1.46929 * 108.89627 * 305.29231 * 7 6 5 9 9 C 1.34777 * 120.63208 * 233.68082 * 8 7 6 10 10 O 1.21281 * 119.99897 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00112 * 179.97438 * 9 8 7 12 12 N 1.46497 * 109.47248 * 179.97438 * 11 9 8 13 13 C 1.36936 * 120.00223 * 270.00292 * 12 11 9 14 14 H 1.07995 * 120.00212 * 142.08995 * 13 12 11 15 15 C 1.38810 * 119.99923 * 322.08195 * 13 12 11 16 16 N 1.31624 * 119.99996 * 157.00102 * 15 13 12 17 17 Si 1.86803 * 120.00295 * 337.00725 * 15 13 12 18 18 H 1.48492 * 109.47115 * 95.69618 * 17 15 13 19 19 H 1.48497 * 109.47221 * 215.70272 * 17 15 13 20 20 H 1.48504 * 109.46744 * 335.70058 * 17 15 13 21 21 C 1.46503 * 119.99768 * 89.99974 * 12 11 9 22 22 C 1.53004 * 109.47234 * 89.81899 * 21 12 11 23 23 C 1.50698 * 109.47265 * 179.97438 * 22 21 12 24 24 O 1.20822 * 120.00070 * 0.02562 * 23 22 21 25 25 O 1.34236 * 119.99708 * 180.02562 * 23 22 21 26 26 C 1.47197 * 118.55492 * 53.53875 * 8 7 6 27 27 C 1.53039 * 109.44674 * 300.05936 * 5 3 2 28 28 H 1.08994 * 109.47393 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47055 * 300.00472 * 1 2 3 30 30 H 1.08998 * 109.46517 * 60.00125 * 1 2 3 31 31 H 1.09002 * 109.45847 * 60.01820 * 5 3 2 32 32 H 1.09000 * 109.49790 * 61.42102 * 6 5 3 33 33 H 1.09000 * 109.52338 * 301.33757 * 6 5 3 34 34 H 1.09001 * 109.59302 * 65.15390 * 7 6 5 35 35 H 1.09005 * 109.58855 * 185.43586 * 7 6 5 36 36 H 1.08996 * 109.46849 * 299.99975 * 11 9 8 37 37 H 1.09004 * 109.46837 * 59.99612 * 11 9 8 38 38 H 0.96997 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47377 * 209.81838 * 21 12 11 40 40 H 1.08998 * 109.47076 * 329.82267 * 21 12 11 41 41 H 1.09001 * 109.46889 * 300.00239 * 22 21 12 42 42 H 1.09009 * 109.46918 * 59.99472 * 22 21 12 43 43 H 0.96696 * 116.99408 * 180.02562 * 25 23 22 44 44 H 1.08997 * 109.53744 * 186.68075 * 26 8 7 45 45 H 1.09007 * 109.67908 * 66.37175 * 26 8 7 46 46 H 1.08999 * 109.49642 * 298.57128 * 27 5 3 47 47 H 1.08998 * 109.49988 * 58.66861 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7424 -0.0002 7 6 5.5297 2.8187 -0.0342 8 7 6.0702 2.0332 1.0837 9 6 6.9356 2.5864 1.9564 10 8 7.2756 3.7429 1.8228 11 6 7.4808 1.7679 3.0983 12 7 8.3935 2.5901 3.8964 13 6 9.7272 2.6286 3.5884 14 1 10.2751 3.5551 3.6759 15 6 10.3750 1.4767 3.1639 16 7 11.4791 1.5665 2.4530 17 14 9.6798 -0.2011 3.6014 18 1 8.8459 -0.6995 2.4784 19 1 10.7951 -1.1498 3.8489 20 1 8.8458 -0.0875 4.8249 21 6 7.8793 3.3713 5.0241 22 6 7.9318 2.5244 6.2973 23 6 7.4035 3.3281 7.4574 24 8 7.0234 4.4618 7.2837 25 8 7.3551 2.7845 8.6838 26 6 5.6435 0.6322 1.2305 27 6 4.1126 0.5799 1.2499 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 3.9563 0.7807 -0.8894 32 1 3.6315 3.2312 0.9016 33 1 3.5913 3.2426 -0.8782 34 1 5.8951 2.4116 -0.9770 35 1 5.8461 3.8573 0.0623 36 1 6.6576 1.4252 3.7251 37 1 8.0195 0.9066 2.7032 38 1 11.9315 0.7615 2.1560 39 1 8.4903 4.2642 5.1563 40 1 6.8483 3.6628 4.8240 41 1 7.3208 1.6315 6.1652 42 1 8.9629 2.2327 6.4974 43 1 7.0080 3.3386 9.3962 44 1 6.0348 0.2278 2.1639 45 1 6.0182 0.0446 0.3922 46 1 3.7428 1.0887 2.1402 47 1 3.7838 -0.4593 1.2613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606403161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:15 Heat of formation + Delta-G solvation = -184.481788 kcal Electronic energy + Delta-G solvation = -31070.977627 eV Core-core repulsion = 26641.037970 eV Total energy + Delta-G solvation = -4429.939657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96734 -39.94129 -39.55520 -37.41315 -36.60208 -36.05686 -35.50556 -33.01618 -32.13874 -31.46994 -30.47400 -28.40643 -27.39176 -25.61067 -25.03370 -23.32366 -22.32127 -21.72646 -20.60728 -19.92549 -18.91573 -17.89521 -17.84123 -17.25150 -17.00567 -16.62436 -16.36654 -16.12911 -15.77316 -15.39920 -15.29659 -14.78926 -14.38747 -14.07757 -13.94432 -13.84935 -13.47947 -13.21998 -13.18088 -12.82098 -12.78946 -12.63366 -12.37667 -12.21507 -12.10736 -11.87134 -11.68231 -11.38100 -11.30695 -11.24637 -11.11827 -10.98338 -10.81992 -10.79641 -10.54165 -10.26660 -10.23828 -10.22808 -9.73176 -9.18746 -8.61126 -8.33790 -7.03431 -6.09286 -3.52397 1.93553 2.41693 2.51844 3.10967 3.23762 3.29547 3.32719 3.40888 3.42854 4.29874 4.36977 4.43814 4.53028 4.77871 4.80750 4.85271 4.92187 4.96860 5.14003 5.19187 5.19726 5.24583 5.41813 5.45173 5.51031 5.54329 5.59679 5.65300 5.73415 5.81345 5.86905 5.91887 6.01770 6.06815 6.12028 6.15933 6.17763 6.47765 6.68181 6.81903 6.86693 7.47421 7.74350 7.94360 8.15539 8.32302 8.76885 8.95056 9.56920 9.93394 11.05881 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003385 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.077572 B = 8270.039917 C = 9548.841309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.506 6.506 5 C -0.078 4.078 6 C -0.116 4.116 7 C 0.112 3.888 8 N -0.630 5.630 9 C 0.492 3.508 10 O -0.512 6.512 11 C 0.117 3.883 12 N -0.575 5.575 13 C -0.265 4.265 14 H 0.083 0.917 15 C 0.037 3.963 16 N -0.889 5.889 17 Si 0.864 3.136 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.263 1.263 21 C 0.168 3.832 22 C -0.138 4.138 23 C 0.480 3.520 24 O -0.521 6.521 25 O -0.524 6.524 26 C 0.112 3.888 27 C -0.126 4.126 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.400 0.600 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 -7.511 -1.191 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.393 6.393 5 C -0.097 4.097 6 C -0.155 4.155 7 C -0.011 4.011 8 N -0.368 5.368 9 C 0.279 3.721 10 O -0.385 6.385 11 C -0.013 4.013 12 N -0.294 5.294 13 C -0.394 4.394 14 H 0.100 0.900 15 C -0.164 4.164 16 N -0.529 5.529 17 Si 0.693 3.307 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.187 1.187 21 C 0.041 3.959 22 C -0.178 4.178 23 C 0.323 3.677 24 O -0.409 6.409 25 O -0.336 6.336 26 C -0.012 4.012 27 C -0.165 4.165 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.129 0.871 43 H 0.258 0.742 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.229 -6.548 -1.681 19.442 hybrid contribution -0.864 -0.825 0.481 1.288 sum -19.093 -7.373 -1.200 20.502 Atomic orbital electron populations 1.23261 0.76471 1.03659 1.02532 1.86516 1.23327 1.33606 1.84080 1.23928 0.92114 0.81231 0.71930 1.90674 1.67186 1.36406 1.44986 1.21127 0.86503 0.99958 1.02106 1.21856 0.96416 0.93044 1.04177 1.21461 0.91229 0.98838 0.89588 1.48589 1.46922 1.12016 1.29307 1.22752 0.76986 0.88946 0.83455 1.90630 1.56740 1.17741 1.73363 1.21419 0.94126 0.94553 0.91178 1.43749 1.04522 1.53820 1.27269 1.18814 0.82795 0.95341 1.42424 0.89964 1.25500 0.95569 0.97677 0.97662 1.69898 1.19934 1.28867 1.34155 0.87127 0.78392 0.85846 0.79372 1.21216 1.22295 1.18725 1.20726 0.98529 0.93161 0.83482 1.22373 1.03831 1.00274 0.91325 1.24082 0.74087 0.86169 0.83366 1.90691 1.45334 1.20033 1.84883 1.84625 1.78832 1.50407 1.19711 1.21671 0.92917 0.83288 1.03336 1.21962 0.96505 1.01523 0.96496 0.88093 0.91914 0.91964 0.87024 0.90549 0.90082 0.91853 0.88448 0.91227 0.89927 0.92530 0.91386 0.93162 0.88807 0.87101 0.74183 0.89210 0.91046 0.90701 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.41 10.44 -39.25 -0.41 -3.82 16 3 C 0.47 5.10 7.25 36.00 0.26 5.36 16 4 O -0.51 -6.95 15.73 -18.75 -0.29 -7.25 16 5 C -0.08 -0.75 2.59 -91.73 -0.24 -0.99 16 6 C -0.12 -1.32 4.65 -26.62 -0.12 -1.45 16 7 C 0.11 1.51 6.42 -3.71 -0.02 1.48 16 8 N -0.63 -9.74 2.98 -172.54 -0.52 -10.25 16 9 C 0.49 9.94 7.77 -10.99 -0.09 9.85 16 10 O -0.51 -12.49 15.84 5.56 0.09 -12.40 16 11 C 0.12 2.34 3.35 -5.20 -0.02 2.32 16 12 N -0.57 -13.12 1.56 -174.61 -0.27 -13.39 16 13 C -0.27 -7.17 9.90 -15.06 -0.15 -7.32 16 14 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 15 C 0.04 1.01 5.29 -17.43 -0.09 0.92 16 16 N -0.89 -26.16 13.97 55.49 0.78 -25.39 16 17 Si 0.86 19.62 25.10 -169.99 -4.27 15.35 16 18 H -0.28 -6.05 6.68 56.52 0.38 -5.67 16 19 H -0.30 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 C 0.17 3.37 4.96 -4.04 -0.02 3.35 16 22 C -0.14 -2.32 6.13 -27.88 -0.17 -2.49 16 23 C 0.48 7.56 8.33 36.00 0.30 7.86 16 24 O -0.52 -9.63 16.74 -18.75 -0.31 -9.94 16 25 O -0.52 -6.55 13.42 -39.27 -0.53 -7.07 16 26 C 0.11 1.30 6.35 -3.56 -0.02 1.28 16 27 C -0.13 -1.19 5.30 -26.61 -0.14 -1.33 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 33 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.53 7.00 -51.93 -0.36 1.16 16 36 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 37 H 0.08 1.74 3.19 -51.93 -0.17 1.57 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 1.47 8.00 -51.93 -0.42 1.06 16 40 H 0.05 0.98 8.03 -51.93 -0.42 0.57 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 43 H 0.40 3.13 9.10 45.56 0.41 3.54 16 44 H 0.09 1.04 5.97 -51.93 -0.31 0.73 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -36.19 388.36 -5.64 -41.83 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.30 Total: 6.33 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 0.54 Total: 20.15 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.01 Total: -49.03 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.46 Total: -40.48 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.27 Total: 15.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.19 -5.64 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606403161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.655 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds