Wall clock time and date at job start Wed Apr 1 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00547 * 2 1 4 4 O 1.20831 * 119.99291 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00544 * 179.97438 * 3 2 1 6 6 C 1.53038 * 109.46278 * 179.97438 * 5 3 2 7 7 C 1.53186 * 109.31130 * 181.37200 * 6 5 3 8 8 N 1.46929 * 108.89627 * 305.29231 * 7 6 5 9 9 C 1.34777 * 120.63208 * 233.68082 * 8 7 6 10 10 O 1.21281 * 119.99897 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00112 * 179.97438 * 9 8 7 12 12 N 1.46497 * 109.47248 * 179.97438 * 11 9 8 13 13 C 1.36936 * 120.00223 * 270.00292 * 12 11 9 14 14 H 1.07995 * 120.00212 * 142.08995 * 13 12 11 15 15 C 1.38810 * 119.99923 * 322.08195 * 13 12 11 16 16 N 1.31624 * 119.99996 * 157.00102 * 15 13 12 17 17 Si 1.86803 * 120.00295 * 337.00725 * 15 13 12 18 18 H 1.48492 * 109.47115 * 95.69618 * 17 15 13 19 19 H 1.48497 * 109.47221 * 215.70272 * 17 15 13 20 20 H 1.48504 * 109.46744 * 335.70058 * 17 15 13 21 21 C 1.46503 * 119.99768 * 89.99974 * 12 11 9 22 22 C 1.53004 * 109.47234 * 89.81899 * 21 12 11 23 23 C 1.50698 * 109.47265 * 179.97438 * 22 21 12 24 24 O 1.20822 * 120.00070 * 0.02562 * 23 22 21 25 25 O 1.34236 * 119.99708 * 180.02562 * 23 22 21 26 26 C 1.47197 * 118.55492 * 53.53875 * 8 7 6 27 27 C 1.53039 * 109.44674 * 300.05936 * 5 3 2 28 28 H 1.08994 * 109.47393 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47055 * 300.00472 * 1 2 3 30 30 H 1.08998 * 109.46517 * 60.00125 * 1 2 3 31 31 H 1.09002 * 109.45847 * 60.01820 * 5 3 2 32 32 H 1.09000 * 109.49790 * 61.42102 * 6 5 3 33 33 H 1.09000 * 109.52338 * 301.33757 * 6 5 3 34 34 H 1.09001 * 109.59302 * 65.15390 * 7 6 5 35 35 H 1.09005 * 109.58855 * 185.43586 * 7 6 5 36 36 H 1.08996 * 109.46849 * 299.99975 * 11 9 8 37 37 H 1.09004 * 109.46837 * 59.99612 * 11 9 8 38 38 H 0.96997 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47377 * 209.81838 * 21 12 11 40 40 H 1.08998 * 109.47076 * 329.82267 * 21 12 11 41 41 H 1.09001 * 109.46889 * 300.00239 * 22 21 12 42 42 H 1.09009 * 109.46918 * 59.99472 * 22 21 12 43 43 H 0.96696 * 116.99408 * 180.02562 * 25 23 22 44 44 H 1.08997 * 109.53744 * 186.68075 * 26 8 7 45 45 H 1.09007 * 109.67908 * 66.37175 * 26 8 7 46 46 H 1.08999 * 109.49642 * 298.57128 * 27 5 3 47 47 H 1.08998 * 109.49988 * 58.66861 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7424 -0.0002 7 6 5.5297 2.8187 -0.0342 8 7 6.0702 2.0332 1.0837 9 6 6.9356 2.5864 1.9564 10 8 7.2756 3.7429 1.8228 11 6 7.4808 1.7679 3.0983 12 7 8.3935 2.5901 3.8964 13 6 9.7272 2.6286 3.5884 14 1 10.2751 3.5551 3.6759 15 6 10.3750 1.4767 3.1639 16 7 11.4791 1.5665 2.4530 17 14 9.6798 -0.2011 3.6014 18 1 8.8459 -0.6995 2.4784 19 1 10.7951 -1.1498 3.8489 20 1 8.8458 -0.0875 4.8249 21 6 7.8793 3.3713 5.0241 22 6 7.9318 2.5244 6.2973 23 6 7.4035 3.3281 7.4574 24 8 7.0234 4.4618 7.2837 25 8 7.3551 2.7845 8.6838 26 6 5.6435 0.6322 1.2305 27 6 4.1126 0.5799 1.2499 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 3.9563 0.7807 -0.8894 32 1 3.6315 3.2312 0.9016 33 1 3.5913 3.2426 -0.8782 34 1 5.8951 2.4116 -0.9770 35 1 5.8461 3.8573 0.0623 36 1 6.6576 1.4252 3.7251 37 1 8.0195 0.9066 2.7032 38 1 11.9315 0.7615 2.1560 39 1 8.4903 4.2642 5.1563 40 1 6.8483 3.6628 4.8240 41 1 7.3208 1.6315 6.1652 42 1 8.9629 2.2327 6.4974 43 1 7.0080 3.3386 9.3962 44 1 6.0348 0.2278 2.1639 45 1 6.0182 0.0446 0.3922 46 1 3.7428 1.0887 2.1402 47 1 3.7838 -0.4593 1.2613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606403161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:14 Heat of formation + Delta-G solvation = -210.777715 kcal Electronic energy + Delta-G solvation = -31072.117904 eV Core-core repulsion = 26641.037970 eV Total energy + Delta-G solvation = -4431.079934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83295 -41.20575 -40.83867 -38.60561 -37.60805 -37.34991 -36.93919 -34.18060 -34.06515 -32.59481 -31.91078 -29.31248 -28.68698 -26.82187 -26.58685 -24.33269 -23.54480 -22.98378 -21.69603 -21.24204 -20.21813 -19.11851 -18.81318 -18.66815 -18.29925 -17.61822 -17.52130 -17.36877 -17.07378 -16.82317 -16.62324 -16.17919 -15.45152 -15.22755 -15.11176 -14.97922 -14.74493 -14.65250 -14.31978 -14.23693 -13.92765 -13.81722 -13.64539 -13.41609 -13.23725 -13.11354 -12.92819 -12.79209 -12.55130 -12.48939 -12.29298 -12.02927 -11.88849 -11.84142 -11.77465 -11.67911 -11.60191 -11.55742 -11.42904 -10.85974 -10.53498 -9.59323 -8.88478 -8.16147 -5.61052 1.12267 1.27138 1.34018 1.51233 1.61570 1.69370 1.86327 2.02088 2.23417 2.46626 3.03240 3.38907 3.46458 3.64593 3.73611 3.85435 4.03602 4.10144 4.15542 4.21642 4.28133 4.32954 4.33533 4.34627 4.41851 4.42046 4.61163 4.62615 4.70237 4.73093 4.74615 4.77370 4.85334 4.96422 4.99566 5.05381 5.22349 5.22421 5.37248 5.65864 5.66692 5.90860 6.20179 6.46201 6.69049 6.88175 7.07865 7.38982 7.58054 7.95632 9.03790 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003385 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.077572 B = 8270.039917 C = 9548.841309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.541 6.541 5 C -0.075 4.075 6 C -0.106 4.106 7 C 0.111 3.889 8 N -0.623 5.623 9 C 0.484 3.516 10 O -0.574 6.574 11 C 0.114 3.886 12 N -0.585 5.585 13 C -0.266 4.266 14 H 0.020 0.980 15 C -0.022 4.022 16 N -0.949 5.949 17 Si 0.939 3.061 18 H -0.253 1.253 19 H -0.307 1.307 20 H -0.227 1.227 21 C 0.171 3.829 22 C -0.129 4.129 23 C 0.494 3.506 24 O -0.555 6.555 25 O -0.511 6.511 26 C 0.100 3.900 27 C -0.117 4.117 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.265 0.735 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.425 0.575 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.593 -11.755 -0.520 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.094 4.094 6 C -0.144 4.144 7 C -0.011 4.011 8 N -0.359 5.359 9 C 0.271 3.729 10 O -0.452 6.452 11 C -0.015 4.015 12 N -0.306 5.306 13 C -0.395 4.395 14 H 0.038 0.962 15 C -0.219 4.219 16 N -0.591 5.591 17 Si 0.763 3.237 18 H -0.178 1.178 19 H -0.236 1.236 20 H -0.149 1.149 21 C 0.045 3.955 22 C -0.169 4.169 23 C 0.337 3.663 24 O -0.446 6.446 25 O -0.324 6.324 26 C -0.021 4.021 27 C -0.155 4.155 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.286 0.714 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.443 -10.848 -0.984 24.051 hybrid contribution 0.043 0.592 0.236 0.639 sum -21.401 -10.255 -0.748 23.743 Atomic orbital electron populations 1.23536 0.75037 1.05702 1.02307 1.86501 1.24711 1.32506 1.83517 1.24058 0.92410 0.81154 0.70932 1.90673 1.67994 1.37636 1.46769 1.21129 0.85986 0.98534 1.03705 1.21685 0.94406 0.94820 1.03486 1.21529 0.92708 0.97140 0.89765 1.48578 1.45225 1.13830 1.28286 1.22783 0.77546 0.88260 0.84301 1.90614 1.59354 1.20227 1.74963 1.21597 0.94754 0.93584 0.91566 1.43702 1.03380 1.54576 1.28894 1.18472 0.84957 0.93510 1.42582 0.96239 1.26275 0.96101 1.02639 0.96861 1.70077 1.22671 1.30195 1.36180 0.85937 0.78114 0.78374 0.81300 1.17849 1.23575 1.14916 1.20563 0.97626 0.92516 0.84763 1.22052 1.04292 1.00415 0.90121 1.23639 0.73264 0.85209 0.84141 1.90700 1.46980 1.21369 1.85567 1.84534 1.78367 1.50389 1.19108 1.22071 0.94528 0.80691 1.04841 1.21919 0.94572 1.03209 0.95775 0.84928 0.92336 0.92109 0.84271 0.92716 0.89384 0.89627 0.91665 0.86555 0.90236 0.92599 0.94784 0.92779 0.85835 0.87637 0.71364 0.88402 0.88715 0.91503 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.51 10.44 -51.40 -0.54 -6.05 16 3 C 0.47 9.02 7.25 71.24 0.52 9.54 16 4 O -0.54 -14.13 15.73 21.95 0.35 -13.79 16 5 C -0.07 -1.19 2.59 -11.52 -0.03 -1.22 16 6 C -0.11 -2.26 4.65 30.67 0.14 -2.12 16 7 C 0.11 2.92 6.42 86.36 0.55 3.48 16 8 N -0.62 -18.22 2.98 -818.20 -2.44 -20.66 16 9 C 0.48 19.48 7.77 87.66 0.68 20.16 16 10 O -0.57 -29.41 15.84 -3.03 -0.05 -29.46 16 11 C 0.11 4.32 3.35 85.63 0.29 4.61 16 12 N -0.59 -26.98 1.56 -706.35 -1.10 -28.08 16 13 C -0.27 -15.09 9.90 84.03 0.83 -14.26 16 14 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 15 C -0.02 -1.24 5.29 84.86 0.45 -0.79 16 16 N -0.95 -58.30 13.97 21.65 0.30 -58.00 16 17 Si 0.94 39.19 25.10 68.60 1.72 40.91 16 18 H -0.25 -9.22 6.68 99.48 0.66 -8.56 16 19 H -0.31 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.23 -8.11 7.11 99.48 0.71 -7.40 16 21 C 0.17 6.99 4.96 86.38 0.43 7.42 16 22 C -0.13 -4.09 6.13 29.85 0.18 -3.91 16 23 C 0.49 14.61 8.33 71.24 0.59 15.20 16 24 O -0.55 -20.21 16.74 21.98 0.37 -19.84 16 25 O -0.51 -11.05 13.42 -51.48 -0.69 -11.74 16 26 C 0.10 1.90 6.35 86.31 0.55 2.45 16 27 C -0.12 -1.68 5.30 30.67 0.16 -1.52 16 28 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.69 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.09 1.77 8.07 -2.39 -0.02 1.75 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.15 7.00 -2.38 -0.02 2.14 16 36 H 0.12 3.28 7.63 -2.39 -0.02 3.27 16 37 H 0.08 3.07 3.19 -2.38 -0.01 3.07 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.03 1.58 8.00 -2.39 -0.02 1.56 16 40 H 0.05 2.14 8.03 -2.39 -0.02 2.12 16 41 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 43 H 0.42 5.17 9.10 -74.06 -0.67 4.50 16 44 H 0.10 1.74 5.97 -2.39 -0.01 1.73 16 45 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.12 1.08 8.08 -2.39 -0.02 1.06 16 Total: -1.00 -86.77 388.36 4.75 -82.03 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.28 Total: 24.15 kcal Atomic # 6 Polarization: 33.98 SS G_CDS: 6.55 Total: 40.53 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.24 Total: -106.75 kcal Atomic # 8 Polarization: -80.31 SS G_CDS: -0.56 Total: -80.87 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.72 Total: 40.91 kcal Total: -86.77 4.75 -82.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606403161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.752 kcal (2) G-P(sol) polarization free energy of solvation -86.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds