Wall clock time and date at job start Wed Apr 1 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 116.99846 * 2 1 4 4 O 1.20825 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00193 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47292 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46699 * 179.97438 * 6 5 3 8 8 C 1.37101 * 119.99842 * 268.90274 * 7 6 5 9 9 H 1.07998 * 119.99883 * 139.51978 * 8 7 6 10 10 C 1.38948 * 120.00176 * 319.51971 * 8 7 6 11 11 N 1.31410 * 119.99857 * 338.86546 * 10 8 7 12 12 Si 1.86795 * 119.99972 * 158.86534 * 10 8 7 13 13 H 1.48505 * 109.47308 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47362 * 120.00031 * 12 10 8 15 15 H 1.48500 * 109.47163 * 240.00044 * 12 10 8 16 16 C 1.34771 * 119.99955 * 88.91343 * 7 6 5 17 17 O 1.21291 * 120.00094 * 355.11107 * 16 7 6 18 18 C 1.50705 * 119.99930 * 175.39693 * 16 7 6 19 19 H 1.09001 * 109.47008 * 38.31213 * 18 16 7 20 20 N 1.46499 * 109.46971 * 158.31663 * 18 16 7 21 21 C 1.34780 * 119.99525 * 205.00048 * 20 18 16 22 22 O 1.21281 * 120.00237 * 359.97438 * 21 20 18 23 23 C 1.50701 * 119.99965 * 180.02562 * 21 20 18 24 24 C 1.53002 * 117.49789 * 248.62020 * 23 21 20 25 25 C 1.52997 * 60.00042 * 252.50800 * 24 23 21 26 26 C 1.52997 * 109.46700 * 278.31066 * 18 16 7 27 27 H 1.09002 * 109.47268 * 60.59828 * 26 18 16 28 28 C 1.52998 * 109.47040 * 180.59662 * 26 18 16 29 29 O 1.42899 * 109.47694 * 300.59820 * 26 18 16 30 30 H 1.08997 * 109.48026 * 59.99503 * 1 2 3 31 31 H 1.08999 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47040 * 299.99415 * 1 2 3 33 33 H 1.09000 * 109.47055 * 59.99421 * 5 3 2 34 34 H 1.09000 * 109.46298 * 299.99653 * 5 3 2 35 35 H 1.09002 * 109.46834 * 59.99427 * 6 5 3 36 36 H 1.08990 * 109.46821 * 299.99843 * 6 5 3 37 37 H 0.97001 * 119.99653 * 180.02562 * 11 10 8 38 38 H 0.96997 * 120.00195 * 24.99472 * 20 18 16 39 39 H 1.09006 * 115.55218 * 34.31886 * 23 21 20 40 40 H 1.09004 * 117.49495 * 359.97438 * 24 23 21 41 41 H 1.09000 * 117.50451 * 145.01495 * 24 23 21 42 42 H 1.09003 * 117.49752 * 252.51159 * 25 24 23 43 43 H 1.08993 * 117.52120 * 107.47977 * 25 24 23 44 44 H 1.09002 * 109.46955 * 59.99974 * 28 26 18 45 45 H 1.09001 * 109.47213 * 180.02562 * 28 26 18 46 46 H 1.09008 * 109.47322 * 300.00367 * 28 26 18 47 47 H 0.96701 * 113.99888 * 300.00438 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4630 2.8188 -0.0011 8 6 6.1463 2.8778 1.1861 9 1 7.0628 2.3200 1.3099 10 6 5.6597 3.6551 2.2299 11 7 4.8182 4.6339 1.9834 12 14 6.2016 3.3087 3.9837 13 1 7.1464 2.1630 3.9928 14 1 6.8752 4.5096 4.5400 15 1 5.0145 2.9786 4.8125 16 6 6.1372 2.8315 -1.1680 17 8 5.5407 2.6903 -2.2146 18 6 7.6331 3.0146 -1.1720 19 1 8.0674 2.4753 -0.3302 20 7 8.1856 2.4922 -2.4243 21 6 9.4672 2.0783 -2.4744 22 8 10.1632 2.1387 -1.4830 23 6 10.0358 1.5415 -3.7626 24 6 10.3741 0.0503 -3.8183 25 6 11.4970 1.0876 -3.7550 26 6 7.9648 4.5032 -1.0501 27 1 7.5628 4.8895 -0.1134 28 6 9.4832 4.6905 -1.0692 29 8 7.3836 5.2123 -2.1462 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.9557 0.7809 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 3.6105 3.2365 0.8889 36 1 3.6100 3.2359 -0.8910 37 1 4.4788 5.1767 2.7121 38 1 7.6290 2.4442 -3.2172 39 1 9.6579 2.0064 -4.6732 40 1 10.1857 -0.5422 -2.9230 41 1 10.2186 -0.4660 -4.7656 42 1 12.0803 1.2538 -4.6608 43 1 12.0471 1.1778 -2.8185 44 1 9.8851 4.3042 -2.0058 45 1 9.7196 5.7510 -0.9818 46 1 9.9266 4.1497 -0.2330 47 1 7.6962 4.9204 -3.0135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643854881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:02 Heat of formation + Delta-G solvation = -175.913230 kcal Electronic energy + Delta-G solvation = -31693.311620 eV Core-core repulsion = 27263.743523 eV Total energy + Delta-G solvation = -4429.568096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30794 -40.05390 -38.75500 -36.98738 -36.18922 -35.86941 -35.08677 -33.69702 -32.08735 -31.09730 -30.21852 -27.84384 -27.06290 -25.14654 -24.23866 -23.12789 -22.51008 -21.18584 -20.28311 -19.83758 -19.32440 -17.86080 -17.42551 -16.81659 -16.49186 -16.30049 -16.18019 -15.88899 -15.51867 -15.01402 -14.74823 -14.58505 -14.37909 -14.13989 -13.76092 -13.60806 -13.45333 -12.85995 -12.70015 -12.55345 -12.37630 -12.25813 -11.94942 -11.84438 -11.64812 -11.57518 -11.32076 -11.30758 -11.11605 -10.80523 -10.73535 -10.60376 -10.58123 -10.54087 -10.42257 -10.14711 -10.05201 -9.83057 -9.61766 -9.29465 -8.81573 -8.41574 -7.68438 -6.50079 -4.27075 2.62259 2.65393 2.98399 3.05334 3.18279 3.21314 3.29281 3.66929 3.84548 4.03820 4.58336 4.69204 4.77998 4.82144 4.84117 5.00803 5.13640 5.20724 5.25161 5.27695 5.45062 5.49289 5.58644 5.61806 5.66629 5.75845 5.83916 5.86002 5.88747 6.03889 6.07750 6.10049 6.22144 6.28789 6.50934 6.62928 6.68032 6.76622 6.87679 7.20485 7.34084 7.72771 7.81911 8.13084 8.14621 8.20009 8.47114 8.92581 9.27306 9.71472 10.51250 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.003952 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.839689 B = 7083.746189 C = 8611.178560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.134 3.866 7 N -0.427 5.427 8 C -0.363 4.363 9 H 0.093 0.907 10 C 0.054 3.946 11 N -0.842 5.842 12 Si 0.908 3.092 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.481 3.519 17 O -0.597 6.597 18 C 0.112 3.888 19 H 0.114 0.886 20 N -0.708 5.708 21 C 0.540 3.460 22 O -0.539 6.539 23 C -0.192 4.192 24 C -0.153 4.153 25 C -0.149 4.149 26 C 0.107 3.893 27 H 0.125 0.875 28 C -0.171 4.171 29 O -0.551 6.551 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.273 0.727 38 H 0.407 0.593 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -7.646 -6.935 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.009 3.991 7 N -0.145 5.145 8 C -0.490 4.490 9 H 0.110 0.890 10 C -0.156 4.156 11 N -0.476 5.476 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.204 1.204 16 C 0.269 3.731 17 O -0.483 6.483 18 C 0.005 3.995 19 H 0.132 0.868 20 N -0.361 5.361 21 C 0.326 3.674 22 O -0.416 6.416 23 C -0.213 4.213 24 C -0.191 4.191 25 C -0.186 4.186 26 C 0.046 3.954 27 H 0.142 0.858 28 C -0.228 4.228 29 O -0.354 6.354 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.244 0.756 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.781 -6.879 -6.100 9.941 hybrid contribution -0.099 -0.396 0.217 0.462 sum 3.682 -7.275 -5.883 10.054 Atomic orbital electron populations 1.23170 0.77323 1.03049 1.02358 1.86537 1.22780 1.34386 1.84642 1.24067 0.92382 0.80907 0.71750 1.90656 1.67272 1.36223 1.45050 1.21895 0.85879 1.03256 1.05315 1.21097 0.82041 0.90926 1.04989 1.43228 1.04377 1.62372 1.04483 1.19419 1.10607 1.29311 0.89672 0.88990 1.25427 0.96486 0.93151 1.00490 1.69980 1.30059 1.14305 1.33231 0.86172 0.78925 0.78981 0.82534 1.18883 1.20415 1.20362 1.20118 0.88411 0.80364 0.84210 1.90515 1.69935 1.55870 1.31951 1.21439 0.93597 0.96823 0.87682 0.86790 1.45817 1.11942 1.64015 1.14311 1.19545 0.81704 0.77163 0.88974 1.90697 1.59260 1.55221 1.36439 1.22197 1.01183 0.99967 0.97994 1.22918 1.02450 0.89861 1.03864 1.22927 0.89823 1.01685 1.04197 1.22207 0.92493 0.88996 0.91656 0.85770 1.22514 0.96183 1.01180 1.02956 1.86671 1.70011 1.62547 1.16214 0.92156 0.88607 0.92150 0.88354 0.87661 0.87341 0.91480 0.91675 0.75637 0.85995 0.88237 0.87960 0.88187 0.87406 0.93041 0.92886 0.90759 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.87 10.57 -39.25 -0.41 -6.28 16 3 C 0.47 8.78 7.96 36.01 0.29 9.07 16 4 O -0.51 -10.83 15.73 -18.75 -0.29 -11.12 16 5 C -0.12 -2.40 6.13 -27.88 -0.17 -2.58 16 6 C 0.13 3.09 4.24 -4.04 -0.02 3.07 16 7 N -0.43 -10.00 2.50 -114.81 -0.29 -10.29 16 8 C -0.36 -8.54 7.97 -14.93 -0.12 -8.66 16 9 H 0.09 2.11 6.71 -52.49 -0.35 1.76 16 10 C 0.05 1.28 4.92 -17.47 -0.09 1.19 16 11 N -0.84 -21.49 11.68 55.50 0.65 -20.84 16 12 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 13 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 16 C 0.48 10.82 6.49 -10.99 -0.07 10.75 16 17 O -0.60 -14.16 15.59 5.55 0.09 -14.08 16 18 C 0.11 2.18 1.83 -69.08 -0.13 2.05 16 19 H 0.11 2.35 6.00 -51.93 -0.31 2.04 16 20 N -0.71 -11.36 4.36 -54.93 -0.24 -11.60 16 21 C 0.54 8.17 5.95 -10.98 -0.07 8.11 16 22 O -0.54 -9.68 13.38 5.56 0.07 -9.61 16 23 C -0.19 -2.15 6.19 -91.77 -0.57 -2.72 16 24 C -0.15 -1.50 10.23 -26.73 -0.27 -1.77 16 25 C -0.15 -1.48 10.04 -26.73 -0.27 -1.74 16 26 C 0.11 2.06 3.39 -26.73 -0.09 1.97 16 27 H 0.12 2.75 7.67 -51.93 -0.40 2.35 16 28 C -0.17 -2.87 8.05 37.16 0.30 -2.57 16 29 O -0.55 -10.75 12.94 -35.23 -0.46 -11.21 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 34 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.11 2.74 5.71 -51.93 -0.30 2.44 16 36 H 0.07 1.68 7.49 -51.93 -0.39 1.29 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.41 6.19 7.75 -40.82 -0.32 5.87 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 1.23 7.67 -51.93 -0.40 0.84 16 44 H 0.05 0.82 5.79 -51.93 -0.30 0.52 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.30 7.49 -51.92 -0.39 0.92 16 47 H 0.36 5.77 8.51 45.56 0.39 6.16 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -30.31 392.12 -6.33 -36.65 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -6.12 Total: 21.20 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -0.20 Total: 17.65 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.12 Total: -42.73 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -1.00 Total: -52.30 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.31 -6.33 -36.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643854881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.266 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds