Wall clock time and date at job start Wed Apr 1 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 116.99846 * 2 1 4 4 O 1.20825 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00193 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47292 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46699 * 179.97438 * 6 5 3 8 8 C 1.37101 * 119.99842 * 268.90274 * 7 6 5 9 9 H 1.07998 * 119.99883 * 139.51978 * 8 7 6 10 10 C 1.38948 * 120.00176 * 319.51971 * 8 7 6 11 11 N 1.31410 * 119.99857 * 338.86546 * 10 8 7 12 12 Si 1.86795 * 119.99972 * 158.86534 * 10 8 7 13 13 H 1.48505 * 109.47308 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47362 * 120.00031 * 12 10 8 15 15 H 1.48500 * 109.47163 * 240.00044 * 12 10 8 16 16 C 1.34771 * 119.99955 * 88.91343 * 7 6 5 17 17 O 1.21291 * 120.00094 * 355.11107 * 16 7 6 18 18 C 1.50705 * 119.99930 * 175.39693 * 16 7 6 19 19 H 1.09001 * 109.47008 * 38.31213 * 18 16 7 20 20 N 1.46499 * 109.46971 * 158.31663 * 18 16 7 21 21 C 1.34780 * 119.99525 * 205.00048 * 20 18 16 22 22 O 1.21281 * 120.00237 * 359.97438 * 21 20 18 23 23 C 1.50701 * 119.99965 * 180.02562 * 21 20 18 24 24 C 1.53002 * 117.49789 * 248.62020 * 23 21 20 25 25 C 1.52997 * 60.00042 * 252.50800 * 24 23 21 26 26 C 1.52997 * 109.46700 * 278.31066 * 18 16 7 27 27 H 1.09002 * 109.47268 * 60.59828 * 26 18 16 28 28 C 1.52998 * 109.47040 * 180.59662 * 26 18 16 29 29 O 1.42899 * 109.47694 * 300.59820 * 26 18 16 30 30 H 1.08997 * 109.48026 * 59.99503 * 1 2 3 31 31 H 1.08999 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47040 * 299.99415 * 1 2 3 33 33 H 1.09000 * 109.47055 * 59.99421 * 5 3 2 34 34 H 1.09000 * 109.46298 * 299.99653 * 5 3 2 35 35 H 1.09002 * 109.46834 * 59.99427 * 6 5 3 36 36 H 1.08990 * 109.46821 * 299.99843 * 6 5 3 37 37 H 0.97001 * 119.99653 * 180.02562 * 11 10 8 38 38 H 0.96997 * 120.00195 * 24.99472 * 20 18 16 39 39 H 1.09006 * 115.55218 * 34.31886 * 23 21 20 40 40 H 1.09004 * 117.49495 * 359.97438 * 24 23 21 41 41 H 1.09000 * 117.50451 * 145.01495 * 24 23 21 42 42 H 1.09003 * 117.49752 * 252.51159 * 25 24 23 43 43 H 1.08993 * 117.52120 * 107.47977 * 25 24 23 44 44 H 1.09002 * 109.46955 * 59.99974 * 28 26 18 45 45 H 1.09001 * 109.47213 * 180.02562 * 28 26 18 46 46 H 1.09008 * 109.47322 * 300.00367 * 28 26 18 47 47 H 0.96701 * 113.99888 * 300.00438 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4630 2.8188 -0.0011 8 6 6.1463 2.8778 1.1861 9 1 7.0628 2.3200 1.3099 10 6 5.6597 3.6551 2.2299 11 7 4.8182 4.6339 1.9834 12 14 6.2016 3.3087 3.9837 13 1 7.1464 2.1630 3.9928 14 1 6.8752 4.5096 4.5400 15 1 5.0145 2.9786 4.8125 16 6 6.1372 2.8315 -1.1680 17 8 5.5407 2.6903 -2.2146 18 6 7.6331 3.0146 -1.1720 19 1 8.0674 2.4753 -0.3302 20 7 8.1856 2.4922 -2.4243 21 6 9.4672 2.0783 -2.4744 22 8 10.1632 2.1387 -1.4830 23 6 10.0358 1.5415 -3.7626 24 6 10.3741 0.0503 -3.8183 25 6 11.4970 1.0876 -3.7550 26 6 7.9648 4.5032 -1.0501 27 1 7.5628 4.8895 -0.1134 28 6 9.4832 4.6905 -1.0692 29 8 7.3836 5.2123 -2.1462 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.9557 0.7809 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 3.6105 3.2365 0.8889 36 1 3.6100 3.2359 -0.8910 37 1 4.4788 5.1767 2.7121 38 1 7.6290 2.4442 -3.2172 39 1 9.6579 2.0064 -4.6732 40 1 10.1857 -0.5422 -2.9230 41 1 10.2186 -0.4660 -4.7656 42 1 12.0803 1.2538 -4.6608 43 1 12.0471 1.1778 -2.8185 44 1 9.8851 4.3042 -2.0058 45 1 9.7196 5.7510 -0.9818 46 1 9.9266 4.1497 -0.2330 47 1 7.6962 4.9204 -3.0135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643854881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:02 Heat of formation + Delta-G solvation = -197.457837 kcal Electronic energy + Delta-G solvation = -31694.245864 eV Core-core repulsion = 27263.743523 eV Total energy + Delta-G solvation = -4430.502341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77223 -41.47767 -40.28079 -38.45645 -37.64193 -36.94705 -36.86073 -35.14613 -33.89796 -32.75252 -31.74336 -29.17704 -28.38379 -26.96555 -25.49886 -24.61878 -23.26216 -22.67820 -21.75339 -21.18790 -21.03351 -19.36816 -18.80903 -18.28986 -17.98575 -17.75054 -17.60806 -17.30739 -17.19214 -16.47906 -16.23784 -15.95009 -15.74289 -15.68183 -15.20400 -15.00144 -14.90861 -14.29175 -14.24943 -14.02867 -13.80633 -13.51249 -13.45472 -13.31613 -13.10814 -12.96223 -12.80503 -12.76088 -12.54949 -12.38526 -12.16724 -12.07418 -11.95284 -11.80699 -11.63510 -11.48763 -11.43224 -11.31756 -11.09913 -10.85897 -10.52647 -9.94763 -9.55532 -8.34964 -6.16926 1.11151 1.39069 1.47693 1.50313 1.59135 1.62390 1.89981 2.01817 2.32701 2.93988 2.98014 2.99255 3.48810 3.72474 3.78993 3.90545 3.90838 3.98472 4.05613 4.12041 4.23494 4.27695 4.30171 4.30775 4.36190 4.42975 4.50315 4.57362 4.68156 4.79108 4.85769 4.92649 4.95780 5.05428 5.09675 5.22265 5.23327 5.28472 5.35150 5.39385 5.47166 5.91379 6.31389 6.55534 6.67898 6.75803 7.06428 7.23203 7.45134 7.87768 8.67408 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.003952 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.839689 B = 7083.746189 C = 8611.178560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.140 3.860 7 N -0.438 5.438 8 C -0.365 4.365 9 H 0.098 0.902 10 C 0.016 3.984 11 N -0.880 5.880 12 Si 0.970 3.030 13 H -0.254 1.254 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.473 3.527 17 O -0.613 6.613 18 C 0.126 3.874 19 H 0.101 0.899 20 N -0.703 5.703 21 C 0.538 3.462 22 O -0.569 6.569 23 C -0.201 4.201 24 C -0.145 4.145 25 C -0.142 4.142 26 C 0.113 3.887 27 H 0.090 0.910 28 C -0.154 4.154 29 O -0.566 6.566 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.273 0.727 38 H 0.413 0.587 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -9.460 -7.903 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.016 3.984 7 N -0.155 5.155 8 C -0.492 4.492 9 H 0.115 0.885 10 C -0.189 4.189 11 N -0.515 5.515 12 Si 0.794 3.206 13 H -0.178 1.178 14 H -0.206 1.206 15 H -0.203 1.203 16 C 0.262 3.738 17 O -0.500 6.500 18 C 0.017 3.983 19 H 0.118 0.882 20 N -0.356 5.356 21 C 0.326 3.674 22 O -0.449 6.449 23 C -0.222 4.222 24 C -0.183 4.183 25 C -0.179 4.179 26 C 0.052 3.948 27 H 0.108 0.892 28 C -0.212 4.212 29 O -0.372 6.372 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.167 0.833 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.861 -8.734 -7.097 12.259 hybrid contribution -0.490 0.135 0.451 0.680 sum 4.371 -8.599 -6.646 11.714 Atomic orbital electron populations 1.23583 0.74750 1.05884 1.02457 1.86506 1.25167 1.32323 1.83834 1.23822 0.92089 0.81291 0.71046 1.90647 1.67852 1.37487 1.46735 1.21661 0.86831 1.00552 1.06243 1.20842 0.82143 0.93102 1.02334 1.43410 1.04490 1.62656 1.04961 1.19621 1.10744 1.29080 0.89772 0.88500 1.26162 0.96377 0.92620 1.03778 1.70087 1.31667 1.15501 1.34203 0.85222 0.78514 0.78861 0.78003 1.17791 1.20588 1.20337 1.20644 0.89792 0.79655 0.83721 1.90487 1.70722 1.56458 1.32304 1.21086 0.91295 0.96889 0.89005 0.88157 1.45757 1.12537 1.64220 1.13125 1.20286 0.80801 0.76114 0.90154 1.90685 1.59799 1.56339 1.38071 1.22251 1.02241 1.01252 0.96478 1.23038 1.01647 0.88919 1.04667 1.23015 0.89236 1.01067 1.04630 1.21999 0.93841 0.88571 0.90379 0.89189 1.22342 0.93935 1.01817 1.03097 1.86628 1.70574 1.62811 1.17199 0.92089 0.84385 0.92148 0.87646 0.86343 0.89635 0.94335 0.91760 0.74943 0.83288 0.89785 0.85042 0.85225 0.89374 0.92007 0.91779 0.91597 0.77563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.10 10.57 -51.37 -0.54 -11.64 16 3 C 0.47 17.86 7.96 71.24 0.57 18.42 16 4 O -0.54 -23.55 15.73 21.97 0.35 -23.20 16 5 C -0.11 -4.45 6.13 29.85 0.18 -4.27 16 6 C 0.14 6.74 4.24 86.38 0.37 7.11 16 7 N -0.44 -21.11 2.50 -635.55 -1.59 -22.70 16 8 C -0.37 -17.54 7.97 84.04 0.67 -16.87 16 9 H 0.10 4.50 6.71 -2.91 -0.02 4.48 16 10 C 0.02 0.79 4.92 84.93 0.42 1.21 16 11 N -0.88 -46.47 11.68 21.66 0.25 -46.21 16 12 Si 0.97 38.56 29.60 68.60 2.03 40.59 16 13 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 14 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 16 C 0.47 21.75 6.49 87.66 0.57 22.32 16 17 O -0.61 -29.54 15.59 -3.06 -0.05 -29.59 16 18 C 0.13 4.95 1.83 44.25 0.08 5.03 16 19 H 0.10 4.23 6.00 -2.39 -0.01 4.22 16 20 N -0.70 -22.11 4.36 -446.09 -1.95 -24.06 16 21 C 0.54 15.66 5.95 87.66 0.52 16.18 16 22 O -0.57 -20.19 13.38 -3.03 -0.04 -20.23 16 23 C -0.20 -3.98 6.19 -11.54 -0.07 -4.05 16 24 C -0.15 -2.43 10.23 30.59 0.31 -2.12 16 25 C -0.14 -2.43 10.04 30.59 0.31 -2.12 16 26 C 0.11 4.41 3.39 30.59 0.10 4.52 16 27 H 0.09 4.16 7.67 -2.39 -0.02 4.14 16 28 C -0.15 -5.13 8.05 71.98 0.58 -4.55 16 29 O -0.57 -22.21 12.94 -148.98 -1.93 -24.14 16 30 H 0.06 1.37 8.13 -2.39 -0.02 1.36 16 31 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 34 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 35 H 0.09 4.53 5.71 -2.39 -0.01 4.52 16 36 H 0.04 2.02 7.49 -2.39 -0.02 2.01 16 37 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.41 12.15 7.75 -92.71 -0.72 11.43 16 39 H 0.15 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.89 7.67 -2.39 -0.02 1.87 16 44 H 0.06 1.91 5.79 -2.39 -0.01 1.90 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.31 7.49 -2.38 -0.02 2.29 16 47 H 0.38 11.80 8.51 -74.06 -0.63 11.17 16 Total: -1.00 -67.85 392.12 2.02 -65.83 By element: Atomic # 1 Polarization: 53.09 SS G_CDS: -0.33 Total: 52.77 kcal Atomic # 6 Polarization: 36.78 SS G_CDS: 5.80 Total: 42.58 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.28 Total: -92.97 kcal Atomic # 8 Polarization: -106.59 SS G_CDS: -2.21 Total: -108.81 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -67.85 2.02 -65.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643854881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.626 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds