Wall clock time and date at job start Wed Apr 1 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34241 * 116.99830 * 2 1 4 4 O 1.20823 * 119.99534 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00059 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.38843 * 30.11391 * 5 3 2 7 7 C 1.54383 * 110.34616 * 152.34975 * 5 3 2 8 8 N 1.48435 * 104.65599 * 142.73673 * 7 5 3 9 9 C 1.34775 * 127.97977 * 140.37019 * 8 7 5 10 10 O 1.21596 * 119.99706 * 180.08578 * 9 8 7 11 11 N 1.34775 * 120.00530 * 0.09125 * 9 8 7 12 12 C 1.46490 * 120.00375 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47390 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47653 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47514 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99554 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99857 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00415 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99932 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46958 * 90.00110 * 19 17 15 21 21 H 1.48497 * 109.47379 * 210.00369 * 19 17 15 22 22 H 1.48495 * 109.46929 * 330.00437 * 19 17 15 23 23 C 1.48144 * 104.18103 * 320.44316 * 8 7 5 24 24 C 1.54283 * 110.34247 * 267.88795 * 5 3 2 25 25 H 1.09002 * 110.34421 * 122.25804 * 24 5 3 26 26 C 1.50709 * 110.34434 * 359.97438 * 24 5 3 27 27 O 1.20826 * 119.99680 * 274.79621 * 26 24 5 28 28 O 1.34229 * 119.99988 * 94.79015 * 26 24 5 29 29 C 1.45196 * 116.99993 * 180.02562 * 28 26 24 30 30 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47026 * 299.99664 * 1 2 3 32 32 H 1.09001 * 109.47204 * 59.99967 * 1 2 3 33 33 H 1.09004 * 110.40859 * 261.52518 * 7 5 3 34 34 H 1.09004 * 110.40460 * 23.83662 * 7 5 3 35 35 H 0.97000 * 119.99178 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47315 * 300.00270 * 12 11 9 37 37 H 1.09001 * 109.47092 * 60.00090 * 12 11 9 38 38 H 1.08995 * 109.47639 * 300.00257 * 13 12 11 39 39 H 1.09003 * 109.47078 * 60.00527 * 13 12 11 40 40 H 1.09007 * 109.46729 * 300.00254 * 14 13 12 41 41 H 1.08995 * 109.46451 * 59.99775 * 14 13 12 42 42 H 0.96996 * 120.00356 * 179.97438 * 18 17 15 43 43 H 1.08997 * 110.40858 * 280.72995 * 23 8 7 44 44 H 1.08998 * 110.41204 * 158.41139 * 23 8 7 45 45 H 1.08997 * 109.47577 * 179.97438 * 29 28 26 46 46 H 1.09001 * 109.46903 * 300.00350 * 29 28 26 47 47 H 1.09004 * 109.46809 * 59.99849 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9916 0.4124 -0.5135 7 6 4.0349 2.5837 -0.6723 8 7 5.2167 3.0095 0.1186 9 6 6.3671 3.5470 -0.3332 10 8 7.2485 3.8433 0.4502 11 7 6.5405 3.7563 -1.6533 12 6 7.7906 4.3411 -2.1443 13 6 7.7297 4.4702 -3.6675 14 6 9.0357 5.0804 -4.1805 15 6 8.9753 5.2082 -5.6808 16 1 8.0938 4.8859 -6.2151 17 6 10.0455 5.7364 -6.3712 18 7 11.1191 6.1283 -5.7206 19 14 9.9710 5.8941 -8.2311 20 1 9.4029 7.2175 -8.5933 21 1 11.3399 5.7723 -8.7935 22 1 9.1107 4.8179 -8.7851 23 6 4.8438 2.7067 1.5200 24 6 4.0996 1.3561 1.4448 25 1 4.7870 0.5333 1.6418 26 6 2.9569 1.3328 2.4271 27 8 2.3878 2.3587 2.7162 28 8 2.5712 0.1724 2.9807 29 6 1.4633 0.2251 3.9177 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 4.3179 2.3989 -1.7086 34 1 3.2502 3.3387 -0.6222 35 1 5.8371 3.5203 -2.2781 36 1 7.9293 5.3271 -1.7009 37 1 8.6259 3.6977 -1.8677 38 1 7.5913 3.4840 -4.1106 39 1 6.8944 5.1134 -3.9445 40 1 9.1745 6.0667 -3.7374 41 1 9.8706 4.4369 -3.9035 42 1 11.8720 6.4996 -6.2064 43 1 4.1863 3.4815 1.9142 44 1 5.7360 2.6151 2.1394 45 1 1.2539 -0.7778 4.2896 46 1 1.7242 0.8755 4.7526 47 1 0.5798 0.6173 3.4139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677224374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:58 Heat of formation + Delta-G solvation = -191.619890 kcal Electronic energy + Delta-G solvation = -30272.010797 eV Core-core repulsion = 25841.761609 eV Total energy + Delta-G solvation = -4430.249188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96174 -40.49973 -40.00100 -38.06446 -36.89497 -36.68183 -35.38632 -33.41193 -32.62913 -31.08336 -30.25718 -28.35770 -28.13113 -26.80392 -24.97063 -24.00811 -22.82964 -21.89833 -20.66822 -20.31950 -19.96667 -18.88511 -18.34054 -17.80561 -17.44936 -17.11918 -16.49203 -16.37698 -16.19940 -15.90021 -15.72516 -14.98771 -14.59636 -14.48972 -14.20506 -14.12321 -14.05765 -13.73850 -13.53737 -13.32140 -13.22725 -12.60868 -12.60446 -12.36741 -12.21878 -12.04987 -11.79996 -11.72227 -11.63239 -11.34307 -11.23965 -11.21529 -10.90535 -10.79845 -10.72751 -10.59572 -10.21772 -9.86724 -9.45778 -9.14857 -9.12653 -8.64346 -8.36887 -6.01452 -4.04562 1.47795 1.59046 1.83398 2.22139 2.54796 3.19107 3.31114 3.37525 3.40079 3.64162 3.75239 4.01970 4.13838 4.29011 4.43568 4.45057 4.54995 4.59396 4.63432 4.68074 4.70171 4.72280 4.98936 5.01370 5.07740 5.26575 5.34325 5.37241 5.48532 5.60874 5.76778 5.79860 5.81717 5.85458 6.17038 6.47823 6.61082 6.77335 6.97693 7.01709 7.14729 7.19386 7.64016 7.76674 7.96374 7.97392 8.38067 8.61796 9.02072 9.59576 11.09773 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.001955 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.324562 B =14319.495067 C =15333.364491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.455 3.545 4 O -0.479 6.479 5 C -0.084 4.084 6 H 0.133 0.867 7 C 0.112 3.888 8 N -0.641 5.641 9 C 0.729 3.271 10 O -0.582 6.582 11 N -0.737 5.737 12 C 0.134 3.866 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.136 3.864 24 C -0.086 4.086 25 H 0.132 0.868 26 C 0.456 3.544 27 O -0.480 6.480 28 O -0.350 6.350 29 C 0.035 3.965 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.237 -17.304 17.361 33.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.295 3.705 4 O -0.364 6.364 5 C -0.104 4.104 6 H 0.151 0.849 7 C -0.012 4.012 8 N -0.380 5.380 9 C 0.431 3.569 10 O -0.459 6.459 11 N -0.391 5.391 12 C 0.011 3.989 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.012 3.988 24 C -0.106 4.106 25 H 0.150 0.850 26 C 0.296 3.704 27 O -0.365 6.365 28 O -0.266 6.266 29 C -0.059 4.059 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.676 -16.310 17.963 33.210 hybrid contribution -0.811 -0.022 -1.238 1.480 sum -23.487 -16.332 16.725 33.138 Atomic orbital electron populations 1.23327 0.75846 1.03986 1.02699 1.86534 1.23719 1.32584 1.83797 1.23295 0.91483 0.82031 0.73669 1.90745 1.66508 1.36018 1.43122 1.21938 0.88582 1.03360 0.96561 0.84905 1.22395 0.89354 0.93561 0.95869 1.47918 1.15044 1.67400 1.07673 1.15323 0.80194 0.78151 0.83193 1.90953 1.41473 1.58005 1.55465 1.45408 1.21076 1.67674 1.04940 1.21574 0.83477 0.97962 0.95847 1.21899 1.02188 1.01009 0.90768 1.19030 0.90497 0.96112 0.95734 1.21194 1.01347 1.41380 0.92129 0.92655 1.25030 0.95494 0.95509 0.98464 1.69961 1.05417 1.42235 1.35598 0.86582 0.77248 0.78422 0.85650 1.20679 1.21220 1.19920 1.22111 0.99918 0.92778 0.84019 1.21988 0.94703 1.03527 0.90419 0.84977 1.23303 0.84361 0.82046 0.80673 1.90749 1.53476 1.33878 1.58400 1.86531 1.49824 1.34606 1.55628 1.23321 0.87120 1.04027 0.91389 0.87698 0.92064 0.91501 0.88804 0.88422 0.77246 0.91742 0.91717 0.92725 0.92716 0.96207 0.96192 0.92925 0.88929 0.88014 0.87696 0.91553 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.76 10.57 -39.29 -0.42 -3.17 16 3 C 0.45 4.19 5.13 36.00 0.18 4.37 16 4 O -0.48 -5.77 14.93 -21.35 -0.32 -6.09 16 5 C -0.08 -0.62 3.56 -90.38 -0.32 -0.95 16 6 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 7 C 0.11 0.98 6.42 -2.25 -0.01 0.97 16 8 N -0.64 -7.37 3.33 -174.78 -0.58 -7.95 16 9 C 0.73 11.15 8.57 -86.92 -0.75 10.40 16 10 O -0.58 -11.25 16.61 5.28 0.09 -11.16 16 11 N -0.74 -10.61 5.53 -65.23 -0.36 -10.97 16 12 C 0.13 2.34 5.67 -4.05 -0.02 2.32 16 13 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.14 1.38 6.54 -2.41 -0.02 1.36 16 24 C -0.09 -0.67 3.56 -90.37 -0.32 -0.99 16 25 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 26 C 0.46 4.29 5.17 36.01 0.19 4.48 16 27 O -0.48 -5.89 14.94 -21.35 -0.32 -6.21 16 28 O -0.35 -2.78 10.57 -39.25 -0.41 -3.20 16 29 C 0.04 0.19 10.56 101.05 1.07 1.26 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.09 0.64 6.89 -51.93 -0.36 0.28 16 34 H 0.10 0.98 6.87 -51.93 -0.36 0.62 16 35 H 0.39 4.57 6.89 -40.82 -0.28 4.29 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.09 1.05 6.90 -51.93 -0.36 0.69 16 44 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 47 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -36.84 396.59 -7.48 -44.32 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.22 Total: -1.17 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.37 Total: 9.21 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.21 Total: -44.89 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.38 Total: -29.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.84 -7.48 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677224374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.301 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds