Wall clock time and date at job start Wed Apr 1 2020 01:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34241 * 116.99830 * 2 1 4 4 O 1.20823 * 119.99534 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00059 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.38843 * 30.11391 * 5 3 2 7 7 C 1.54383 * 110.34616 * 152.34975 * 5 3 2 8 8 N 1.48435 * 104.65599 * 142.73673 * 7 5 3 9 9 C 1.34775 * 127.97977 * 140.37019 * 8 7 5 10 10 O 1.21596 * 119.99706 * 180.08578 * 9 8 7 11 11 N 1.34775 * 120.00530 * 0.09125 * 9 8 7 12 12 C 1.46490 * 120.00375 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47390 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47653 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47514 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99554 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99857 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00415 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99932 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46958 * 90.00110 * 19 17 15 21 21 H 1.48497 * 109.47379 * 210.00369 * 19 17 15 22 22 H 1.48495 * 109.46929 * 330.00437 * 19 17 15 23 23 C 1.48144 * 104.18103 * 320.44316 * 8 7 5 24 24 C 1.54283 * 110.34247 * 267.88795 * 5 3 2 25 25 H 1.09002 * 110.34421 * 122.25804 * 24 5 3 26 26 C 1.50709 * 110.34434 * 359.97438 * 24 5 3 27 27 O 1.20826 * 119.99680 * 274.79621 * 26 24 5 28 28 O 1.34229 * 119.99988 * 94.79015 * 26 24 5 29 29 C 1.45196 * 116.99993 * 180.02562 * 28 26 24 30 30 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47026 * 299.99664 * 1 2 3 32 32 H 1.09001 * 109.47204 * 59.99967 * 1 2 3 33 33 H 1.09004 * 110.40859 * 261.52518 * 7 5 3 34 34 H 1.09004 * 110.40460 * 23.83662 * 7 5 3 35 35 H 0.97000 * 119.99178 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47315 * 300.00270 * 12 11 9 37 37 H 1.09001 * 109.47092 * 60.00090 * 12 11 9 38 38 H 1.08995 * 109.47639 * 300.00257 * 13 12 11 39 39 H 1.09003 * 109.47078 * 60.00527 * 13 12 11 40 40 H 1.09007 * 109.46729 * 300.00254 * 14 13 12 41 41 H 1.08995 * 109.46451 * 59.99775 * 14 13 12 42 42 H 0.96996 * 120.00356 * 179.97438 * 18 17 15 43 43 H 1.08997 * 110.40858 * 280.72995 * 23 8 7 44 44 H 1.08998 * 110.41204 * 158.41139 * 23 8 7 45 45 H 1.08997 * 109.47577 * 179.97438 * 29 28 26 46 46 H 1.09001 * 109.46903 * 300.00350 * 29 28 26 47 47 H 1.09004 * 109.46809 * 59.99849 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9916 0.4124 -0.5135 7 6 4.0349 2.5837 -0.6723 8 7 5.2167 3.0095 0.1186 9 6 6.3671 3.5470 -0.3332 10 8 7.2485 3.8433 0.4502 11 7 6.5405 3.7563 -1.6533 12 6 7.7906 4.3411 -2.1443 13 6 7.7297 4.4702 -3.6675 14 6 9.0357 5.0804 -4.1805 15 6 8.9753 5.2082 -5.6808 16 1 8.0938 4.8859 -6.2151 17 6 10.0455 5.7364 -6.3712 18 7 11.1191 6.1283 -5.7206 19 14 9.9710 5.8941 -8.2311 20 1 9.4029 7.2175 -8.5933 21 1 11.3399 5.7723 -8.7935 22 1 9.1107 4.8179 -8.7851 23 6 4.8438 2.7067 1.5200 24 6 4.0996 1.3561 1.4448 25 1 4.7870 0.5333 1.6418 26 6 2.9569 1.3328 2.4271 27 8 2.3878 2.3587 2.7162 28 8 2.5712 0.1724 2.9807 29 6 1.4633 0.2251 3.9177 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 4.3179 2.3989 -1.7086 34 1 3.2502 3.3387 -0.6222 35 1 5.8371 3.5203 -2.2781 36 1 7.9293 5.3271 -1.7009 37 1 8.6259 3.6977 -1.8677 38 1 7.5913 3.4840 -4.1106 39 1 6.8944 5.1134 -3.9445 40 1 9.1745 6.0667 -3.7374 41 1 9.8706 4.4369 -3.9035 42 1 11.8720 6.4996 -6.2064 43 1 4.1863 3.4815 1.9142 44 1 5.7360 2.6151 2.1394 45 1 1.2539 -0.7778 4.2896 46 1 1.7242 0.8755 4.7526 47 1 0.5798 0.6173 3.4139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677224374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:57 Heat of formation + Delta-G solvation = -216.368929 kcal Electronic energy + Delta-G solvation = -30273.083996 eV Core-core repulsion = 25841.761609 eV Total energy + Delta-G solvation = -4431.322387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68653 -41.18421 -41.07238 -38.92341 -37.59025 -37.47667 -36.90078 -35.20488 -33.75643 -32.65467 -31.01385 -29.09407 -28.67041 -28.32207 -26.09303 -24.81434 -24.36727 -22.61590 -22.27194 -21.12842 -20.99550 -19.60618 -19.35648 -18.49718 -18.46524 -18.14117 -17.82783 -17.24039 -16.99141 -16.89616 -16.79181 -16.45542 -15.96538 -15.69655 -15.18182 -15.00514 -14.76531 -14.69367 -14.29218 -14.25120 -14.15639 -14.05090 -13.69374 -13.45947 -13.10388 -13.09404 -13.01236 -12.74813 -12.70945 -12.50886 -12.34002 -12.29688 -11.97631 -11.93573 -11.83393 -11.67903 -11.64264 -11.49689 -11.32711 -11.14563 -10.52780 -10.34790 -9.75137 -8.16915 -6.28005 0.77044 0.89895 1.09083 1.43557 1.44686 1.55460 1.59699 1.66369 2.03358 2.43687 2.84379 2.98673 3.16405 3.16929 3.56088 3.67138 3.77344 3.96659 4.07743 4.17813 4.18288 4.25484 4.26609 4.26935 4.28386 4.37514 4.50386 4.59297 4.63748 4.66997 4.68811 4.69220 4.86594 4.99464 5.02546 5.18930 5.20427 5.22130 5.45246 5.56011 5.74957 5.86954 5.89031 6.25395 6.47702 6.52904 6.84861 6.90337 7.41249 7.44486 8.95068 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.001955 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.324562 B =14319.495067 C =15333.364491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.456 3.544 4 O -0.514 6.514 5 C -0.078 4.078 6 H 0.171 0.829 7 C 0.110 3.890 8 N -0.635 5.635 9 C 0.729 3.271 10 O -0.628 6.628 11 N -0.725 5.725 12 C 0.149 3.851 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.259 1.259 23 C 0.133 3.867 24 C -0.078 4.078 25 H 0.165 0.835 26 C 0.457 3.543 27 O -0.515 6.515 28 O -0.348 6.348 29 C 0.028 3.972 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.066 0.934 40 H -0.009 1.009 41 H -0.005 1.005 42 H 0.263 0.737 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.063 0.937 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.927 -19.778 16.214 35.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.298 3.702 4 O -0.402 6.402 5 C -0.098 4.098 6 H 0.188 0.812 7 C -0.013 4.013 8 N -0.372 5.372 9 C 0.431 3.569 10 O -0.509 6.509 11 N -0.381 5.381 12 C 0.025 3.975 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.183 1.183 23 C 0.010 3.990 24 C -0.098 4.098 25 H 0.183 0.817 26 C 0.299 3.701 27 O -0.404 6.404 28 O -0.263 6.263 29 C -0.065 4.065 30 H 0.155 0.845 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.010 0.990 41 H 0.013 0.987 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.156 0.844 46 H 0.082 0.918 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.443 -18.846 16.813 35.146 hybrid contribution -0.392 0.714 -0.779 1.127 sum -24.835 -18.132 16.034 34.679 Atomic orbital electron populations 1.23581 0.74638 1.05968 1.02299 1.86529 1.24923 1.31698 1.83260 1.23596 0.92089 0.81879 0.72641 1.90740 1.67410 1.37214 1.44829 1.22027 0.87631 1.03871 0.96294 0.81157 1.22538 0.87726 0.94007 0.97049 1.47764 1.14532 1.66187 1.08758 1.15356 0.80650 0.78048 0.82846 1.90923 1.43485 1.59885 1.56558 1.45033 1.20474 1.67367 1.05184 1.21141 0.84621 0.97105 0.94629 1.21595 0.99125 1.01527 0.91628 1.18946 0.92867 0.94574 0.95083 1.21681 1.01682 1.40913 0.93422 0.91481 1.26019 0.95126 0.95180 1.03880 1.70108 1.06298 1.43338 1.37745 0.85426 0.77402 0.78871 0.79202 1.20038 1.21117 1.18334 1.22120 0.99759 0.93930 0.83233 1.22004 0.94521 1.02926 0.90388 0.81702 1.23587 0.84209 0.81887 0.80428 1.90742 1.54747 1.35154 1.59719 1.86524 1.50393 1.33659 1.55749 1.23592 0.86125 1.06047 0.90751 0.84523 0.92809 0.91653 0.86210 0.89806 0.75274 0.93507 0.92799 0.90986 0.91557 0.99040 0.98668 0.92876 0.90580 0.88209 0.84399 0.91819 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -4.67 10.57 -51.53 -0.54 -5.22 16 3 C 0.46 7.61 5.13 71.23 0.37 7.97 16 4 O -0.51 -12.16 14.93 24.46 0.37 -11.79 16 5 C -0.08 -0.95 3.56 -10.64 -0.04 -0.99 16 6 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 7 C 0.11 1.70 6.42 86.48 0.56 2.25 16 8 N -0.63 -13.88 3.33 -825.13 -2.75 -16.62 16 9 C 0.73 21.82 8.57 179.06 1.54 23.35 16 10 O -0.63 -24.59 16.61 -4.02 -0.07 -24.66 16 11 N -0.72 -19.93 5.53 -478.56 -2.65 -22.58 16 12 C 0.15 5.19 5.67 86.38 0.49 5.68 16 13 C -0.10 -3.78 5.27 30.59 0.16 -3.62 16 14 C 0.02 1.18 4.97 29.85 0.15 1.33 16 15 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 19 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 23 C 0.13 2.63 6.54 86.54 0.57 3.20 16 24 C -0.08 -1.07 3.56 -10.63 -0.04 -1.10 16 25 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 26 C 0.46 8.11 5.17 71.24 0.37 8.48 16 27 O -0.52 -12.76 14.94 24.45 0.37 -12.40 16 28 O -0.35 -4.89 10.57 -51.40 -0.54 -5.43 16 29 C 0.03 0.27 10.56 113.37 1.20 1.46 16 30 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.59 8.13 -2.38 -0.02 0.57 16 32 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 33 H 0.12 1.22 6.89 -2.39 -0.02 1.21 16 34 H 0.08 1.61 6.87 -2.38 -0.02 1.59 16 35 H 0.41 8.47 6.89 -92.71 -0.64 7.83 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.08 1.78 6.90 -2.39 -0.02 1.76 16 44 H 0.10 2.01 7.88 -2.39 -0.02 1.99 16 45 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 47 H 0.05 0.60 8.13 -2.38 -0.02 0.58 16 Total: -1.00 -82.27 396.59 4.04 -78.23 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.35 Total: 11.28 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 7.20 Total: 20.19 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -5.11 Total: -95.78 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -0.42 Total: -59.49 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -82.27 4.04 -78.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677224374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.142 kcal (2) G-P(sol) polarization free energy of solvation -82.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds