Wall clock time and date at job start Wed Apr 1 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47149 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99967 * 3 2 1 6 6 H 1.48493 * 109.47009 * 149.99782 * 3 2 1 7 7 C 1.37872 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47463 * 180.02562 * 17 16 15 19 19 C 1.34520 * 124.46024 * 269.70136 * 18 17 16 20 20 O 1.21446 * 125.70869 * 0.03422 * 19 18 17 21 21 C 1.47815 * 108.58384 * 179.90364 * 19 18 17 22 22 C 1.38556 * 134.30049 * 180.12622 * 21 19 18 23 23 C 1.38614 * 119.71896 * 180.28721 * 22 21 19 24 24 C 1.38232 * 120.45742 * 359.95452 * 23 22 21 25 25 C 1.38607 * 120.46084 * 0.02562 * 24 23 22 26 26 C 1.38566 * 119.71807 * 0.02562 * 25 24 23 27 27 C 1.34522 * 124.46270 * 89.99776 * 18 17 16 28 28 O 1.21455 * 125.70627 * 359.94665 * 27 18 17 29 29 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 30 30 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 32 32 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 33 33 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 34 34 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 35 35 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 36 36 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 37 37 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 38 38 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 39 39 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 40 40 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 41 41 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 42 42 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 43 43 H 1.07997 * 120.14472 * 0.28875 * 22 21 19 44 44 H 1.08007 * 119.77257 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.76469 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.14093 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46133 * 58.27161 * 29 14 13 48 48 H 1.09002 * 109.46165 * 178.24800 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6824 0.8910 11 6 4.0231 -0.4715 -1.2493 12 6 5.5532 -0.5284 -1.2716 13 6 6.0049 -1.9902 -1.2405 14 7 5.4908 -2.6369 -0.0263 15 6 6.0188 -4.0012 0.1072 16 6 5.4749 -4.8719 -1.0272 17 6 6.0243 -6.2930 -0.8877 18 7 5.5040 -7.1266 -1.9743 19 6 4.3651 -7.8395 -1.9083 20 8 3.6166 -7.8928 -0.9535 21 6 4.1756 -8.5447 -3.1935 22 6 3.2074 -9.4000 -3.6945 23 6 3.3356 -9.9061 -4.9785 24 6 4.4214 -9.5627 -5.7620 25 6 5.3974 -8.7078 -5.2743 26 6 5.2831 -8.1950 -3.9921 27 6 6.1051 -7.2845 -3.1674 28 8 7.1486 -6.7658 -3.5095 29 6 4.0225 -2.6365 -0.0056 30 1 -0.4851 0.8400 -0.0004 31 1 3.6976 0.5685 -1.2278 32 1 3.6275 -0.9596 -2.1400 33 1 5.9217 -0.0528 -2.1805 34 1 5.9495 -0.0057 -0.4010 35 1 5.6198 -2.5082 -2.1187 36 1 7.0941 -2.0338 -1.2416 37 1 7.1073 -3.9762 0.0561 38 1 5.7096 -4.4183 1.0656 39 1 4.3864 -4.8969 -0.9761 40 1 5.7841 -4.4548 -1.9856 41 1 7.1128 -6.2684 -0.9385 42 1 5.7147 -6.7098 0.0707 43 1 2.3566 -9.6711 -3.0871 44 1 2.5816 -10.5732 -5.3697 45 1 4.5098 -9.9633 -6.7610 46 1 6.2438 -8.4433 -5.8907 47 1 3.6467 -3.1515 -0.8897 48 1 3.6718 -3.1493 0.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595610708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:25 Heat of formation + Delta-G solvation = -13.873697 kcal Electronic energy + Delta-G solvation = -29663.882344 eV Core-core repulsion = 25684.482824 eV Total energy + Delta-G solvation = -3979.399521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59706 -39.05239 -38.85852 -38.64480 -36.24079 -34.86378 -33.06129 -32.04828 -31.59269 -30.28321 -30.12126 -26.40459 -25.42976 -24.93621 -24.19274 -22.63209 -22.53972 -21.56041 -20.87433 -20.16964 -18.58544 -18.13362 -17.58426 -16.87271 -16.71481 -16.48780 -15.66645 -15.50640 -15.05777 -14.98818 -14.75868 -14.46156 -14.34241 -14.21838 -14.07418 -13.92677 -13.40535 -13.17455 -12.90277 -12.78449 -12.53142 -12.34475 -12.17027 -12.08744 -11.85842 -11.67050 -11.14751 -11.07223 -10.82120 -10.72220 -10.57079 -10.29757 -10.09462 -10.04053 -9.90463 -9.68752 -9.68319 -9.60245 -9.08224 -8.89982 -8.48311 -7.79854 -6.03674 -4.02653 -0.32158 0.51552 1.65612 2.05372 2.66806 3.16107 3.26644 3.30881 3.41971 3.45749 3.96094 4.15848 4.36237 4.40429 4.45494 4.59222 4.67700 4.75319 4.84648 4.94605 5.04952 5.20568 5.24890 5.27687 5.30043 5.45935 5.48005 5.49309 5.60181 5.65866 5.71676 5.76510 5.79935 5.89663 6.07255 6.11739 6.16512 6.23441 6.32564 6.35977 6.42810 6.52090 6.64323 6.83123 6.86404 6.92255 7.23319 7.39116 7.42110 7.61129 7.68038 7.89179 8.55802 8.99757 9.59179 11.09642 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002662 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.121197 B =10514.587805 C =11278.286803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.123 4.123 12 C -0.120 4.120 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.062 3.938 16 C -0.179 4.179 17 C 0.116 3.884 18 N -0.574 5.574 19 C 0.571 3.429 20 O -0.454 6.454 21 C -0.137 4.137 22 C -0.045 4.045 23 C -0.096 4.096 24 C -0.098 4.098 25 C -0.046 4.046 26 C -0.140 4.140 27 C 0.574 3.426 28 O -0.463 6.463 29 C 0.074 3.926 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.029 0.971 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.945 -21.202 -10.734 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.000 4.000 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.067 4.067 16 C -0.219 4.219 17 C -0.004 4.004 18 N -0.316 5.316 19 C 0.360 3.640 20 O -0.324 6.324 21 C -0.141 4.141 22 C -0.064 4.064 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.065 4.065 26 C -0.144 4.144 27 C 0.363 3.637 28 O -0.334 6.334 29 C -0.053 4.053 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.047 0.953 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.141 -20.489 -9.890 26.274 hybrid contribution -0.018 0.543 -0.846 1.006 sum 13.122 -19.946 -10.736 26.178 Atomic orbital electron populations 1.69902 1.06302 1.26893 1.51019 1.24985 0.94664 0.99038 0.94440 0.86822 0.80030 0.83462 0.77813 1.20778 1.22653 1.18785 1.21006 0.88815 0.94477 1.50867 0.90997 1.19166 0.95950 0.91177 0.93665 0.94679 1.22029 0.92671 1.00211 1.01112 1.21659 0.98064 0.95241 1.00816 1.22014 0.98483 0.95371 0.90874 1.62261 1.10640 1.15419 1.37579 1.22097 0.99442 0.88064 0.97097 1.22722 1.02952 0.94198 1.02017 1.21808 0.99963 0.90229 0.88397 1.46632 1.23821 1.44615 1.16572 1.18391 0.80132 0.78188 0.87316 1.90846 1.45155 1.59895 1.36495 1.20613 0.97514 1.00929 0.95050 1.20849 0.97104 0.93122 0.95318 1.21492 0.98000 0.98730 0.93203 1.21474 0.93322 0.96375 1.00430 1.20811 0.98920 0.94102 0.92654 1.20605 0.96843 1.00661 0.96295 1.18373 0.84024 0.80028 0.81265 1.90810 1.20852 1.47560 1.74178 1.22126 0.83720 0.99601 0.99834 0.92723 0.93547 0.92682 0.92849 0.91794 0.95282 0.91854 0.91003 0.90441 0.90334 0.91181 0.88590 0.88347 0.83882 0.83993 0.84048 0.84041 0.95315 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.89 22.53 24.35 -169.99 -4.14 18.40 16 4 H -0.28 -6.94 6.89 56.52 0.39 -6.55 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 7 C -0.51 -14.67 9.15 -34.44 -0.32 -14.98 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 10 H 0.04 0.89 7.21 -51.93 -0.37 0.52 16 11 C -0.12 -2.72 4.73 -26.60 -0.13 -2.85 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C 0.06 1.00 5.05 -3.83 -0.02 0.98 16 14 N -0.54 -9.32 4.86 -234.67 -1.14 -10.46 16 15 C 0.06 0.85 5.36 -3.83 -0.02 0.83 16 16 C -0.18 -2.41 4.84 -26.73 -0.13 -2.54 16 17 C 0.12 1.31 5.75 -4.04 -0.02 1.29 16 18 N -0.57 -7.00 2.62 -117.62 -0.31 -7.31 16 19 C 0.57 7.26 8.02 -12.46 -0.10 7.16 16 20 O -0.45 -6.95 17.67 5.41 0.10 -6.86 16 21 C -0.14 -1.40 6.40 -104.84 -0.67 -2.07 16 22 C -0.05 -0.34 10.09 -39.33 -0.40 -0.73 16 23 C -0.10 -0.48 10.04 -39.44 -0.40 -0.88 16 24 C -0.10 -0.47 10.04 -39.45 -0.40 -0.87 16 25 C -0.05 -0.32 10.09 -39.32 -0.40 -0.72 16 26 C -0.14 -1.39 6.40 -104.84 -0.67 -2.06 16 27 C 0.57 6.96 8.02 -12.46 -0.10 6.86 16 28 O -0.46 -6.52 17.68 5.41 0.10 -6.43 16 29 C 0.07 1.53 4.06 -3.84 -0.02 1.51 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.05 1.09 3.34 -51.93 -0.17 0.91 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 36 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.25 6.51 -51.93 -0.34 0.91 16 40 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 41 H 0.10 0.95 7.96 -51.93 -0.41 0.53 16 42 H 0.10 1.03 7.96 -51.93 -0.41 0.62 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 45 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.03 0.61 6.61 -51.93 -0.34 0.27 16 48 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -34.40 381.46 -10.07 -44.48 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.99 Total: -1.09 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -4.21 Total: -9.15 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.68 Total: -45.10 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.19 Total: -13.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.40 -10.07 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.605 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds