Wall clock time and date at job start Wed Apr 1 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47149 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99967 * 3 2 1 6 6 H 1.48493 * 109.47009 * 149.99782 * 3 2 1 7 7 C 1.37872 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47463 * 180.02562 * 17 16 15 19 19 C 1.34520 * 124.46024 * 269.70136 * 18 17 16 20 20 O 1.21446 * 125.70869 * 0.03422 * 19 18 17 21 21 C 1.47815 * 108.58384 * 179.90364 * 19 18 17 22 22 C 1.38556 * 134.30049 * 180.12622 * 21 19 18 23 23 C 1.38614 * 119.71896 * 180.28721 * 22 21 19 24 24 C 1.38232 * 120.45742 * 359.95452 * 23 22 21 25 25 C 1.38607 * 120.46084 * 0.02562 * 24 23 22 26 26 C 1.38566 * 119.71807 * 0.02562 * 25 24 23 27 27 C 1.34522 * 124.46270 * 89.99776 * 18 17 16 28 28 O 1.21455 * 125.70627 * 359.94665 * 27 18 17 29 29 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 30 30 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 32 32 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 33 33 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 34 34 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 35 35 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 36 36 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 37 37 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 38 38 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 39 39 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 40 40 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 41 41 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 42 42 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 43 43 H 1.07997 * 120.14472 * 0.28875 * 22 21 19 44 44 H 1.08007 * 119.77257 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.76469 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.14093 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46133 * 58.27161 * 29 14 13 48 48 H 1.09002 * 109.46165 * 178.24800 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6824 0.8910 11 6 4.0231 -0.4715 -1.2493 12 6 5.5532 -0.5284 -1.2716 13 6 6.0049 -1.9902 -1.2405 14 7 5.4908 -2.6369 -0.0263 15 6 6.0188 -4.0012 0.1072 16 6 5.4749 -4.8719 -1.0272 17 6 6.0243 -6.2930 -0.8877 18 7 5.5040 -7.1266 -1.9743 19 6 4.3651 -7.8395 -1.9083 20 8 3.6166 -7.8928 -0.9535 21 6 4.1756 -8.5447 -3.1935 22 6 3.2074 -9.4000 -3.6945 23 6 3.3356 -9.9061 -4.9785 24 6 4.4214 -9.5627 -5.7620 25 6 5.3974 -8.7078 -5.2743 26 6 5.2831 -8.1950 -3.9921 27 6 6.1051 -7.2845 -3.1674 28 8 7.1486 -6.7658 -3.5095 29 6 4.0225 -2.6365 -0.0056 30 1 -0.4851 0.8400 -0.0004 31 1 3.6976 0.5685 -1.2278 32 1 3.6275 -0.9596 -2.1400 33 1 5.9217 -0.0528 -2.1805 34 1 5.9495 -0.0057 -0.4010 35 1 5.6198 -2.5082 -2.1187 36 1 7.0941 -2.0338 -1.2416 37 1 7.1073 -3.9762 0.0561 38 1 5.7096 -4.4183 1.0656 39 1 4.3864 -4.8969 -0.9761 40 1 5.7841 -4.4548 -1.9856 41 1 7.1128 -6.2684 -0.9385 42 1 5.7147 -6.7098 0.0707 43 1 2.3566 -9.6711 -3.0871 44 1 2.5816 -10.5732 -5.3697 45 1 4.5098 -9.9633 -6.7610 46 1 6.2438 -8.4433 -5.8907 47 1 3.6467 -3.1515 -0.8897 48 1 3.6718 -3.1493 0.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595610708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:24 Heat of formation + Delta-G solvation = -37.064378 kcal Electronic energy + Delta-G solvation = -29664.887968 eV Core-core repulsion = 25684.482824 eV Total energy + Delta-G solvation = -3980.405144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.45258 -40.32633 -39.86025 -39.48989 -37.30202 -36.28245 -34.65344 -33.45720 -32.14541 -32.06590 -31.15498 -27.54402 -26.89551 -26.25578 -25.33560 -23.56563 -23.26534 -23.05312 -22.44392 -20.99232 -20.18638 -18.89022 -18.86677 -18.45925 -17.76715 -17.44864 -17.01822 -16.53949 -16.25583 -15.95629 -15.68090 -15.64183 -15.44640 -15.34161 -15.24881 -15.07259 -15.06183 -14.78347 -14.14285 -13.88475 -13.80074 -13.46751 -13.26830 -13.12071 -13.01349 -12.96318 -12.70060 -12.65424 -12.34877 -11.95154 -11.85070 -11.67583 -11.59346 -11.49571 -11.45616 -11.06617 -11.03935 -10.84454 -10.64190 -10.24688 -10.22648 -9.22302 -8.33267 -6.37386 -1.06685 -0.03769 0.93260 1.18293 1.27516 1.34024 1.45751 1.75023 2.30417 2.53874 2.59957 3.00921 3.02293 3.15318 3.56751 3.68645 3.75048 3.99743 4.03520 4.04767 4.07116 4.14042 4.15950 4.19735 4.25682 4.28236 4.43317 4.47294 4.49462 4.56602 4.67263 4.69145 4.79164 4.81618 4.87000 4.90528 4.94681 4.99958 5.11145 5.15032 5.19321 5.22893 5.25064 5.40888 5.49731 5.60097 5.67827 5.68971 6.00611 6.10487 6.22534 6.31395 6.45941 6.69716 7.28246 8.83920 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002662 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.121197 B =10514.587805 C =11278.286803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.027 0.973 9 C 0.020 3.980 10 H 0.027 0.973 11 C -0.123 4.123 12 C -0.115 4.115 13 C 0.060 3.940 14 N -0.540 5.540 15 C 0.064 3.936 16 C -0.166 4.166 17 C 0.116 3.884 18 N -0.580 5.580 19 C 0.566 3.434 20 O -0.495 6.495 21 C -0.164 4.164 22 C -0.050 4.050 23 C -0.083 4.083 24 C -0.082 4.082 25 C -0.044 4.044 26 C -0.162 4.162 27 C 0.573 3.427 28 O -0.489 6.489 29 C 0.089 3.911 30 H 0.266 0.734 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.150 0.850 44 H 0.180 0.820 45 H 0.183 0.817 46 H 0.158 0.842 47 H 0.013 0.987 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.660 -22.018 -13.007 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.560 4.560 8 H 0.046 0.954 9 C 0.001 3.999 10 H 0.045 0.955 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.067 4.067 14 N -0.263 5.263 15 C -0.065 4.065 16 C -0.206 4.206 17 C -0.004 4.004 18 N -0.321 5.321 19 C 0.357 3.643 20 O -0.369 6.369 21 C -0.168 4.168 22 C -0.068 4.068 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.063 4.063 26 C -0.165 4.165 27 C 0.364 3.636 28 O -0.362 6.362 29 C -0.039 4.039 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.168 0.832 44 H 0.197 0.803 45 H 0.200 0.800 46 H 0.176 0.824 47 H 0.031 0.969 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.886 -21.329 -12.177 29.251 hybrid contribution -0.954 0.619 -0.219 1.158 sum 14.932 -20.711 -12.397 28.383 Atomic orbital electron populations 1.70054 1.08240 1.28089 1.52739 1.25883 0.95456 1.03107 0.94045 0.85751 0.79139 0.78339 0.78671 1.19265 1.22547 1.16969 1.21324 0.91575 0.92877 1.50258 0.95425 1.19078 0.92847 0.93578 0.94446 0.95480 1.21926 0.96144 0.98839 0.99117 1.21642 0.94390 0.96715 1.02488 1.22101 1.00380 0.94133 0.90123 1.62214 1.07848 1.17886 1.38351 1.22211 1.01039 0.85996 0.97224 1.22535 1.00743 0.95739 1.01565 1.21829 1.00947 0.88889 0.88726 1.46731 1.23881 1.44514 1.16987 1.18923 0.79590 0.77843 0.87896 1.90807 1.46378 1.61578 1.38137 1.20559 0.99325 1.03001 0.93911 1.21178 0.96566 0.92400 0.96672 1.21967 0.98609 0.97841 0.91663 1.21985 0.91777 0.94395 1.01808 1.21196 0.99982 0.93680 0.91415 1.20575 0.96611 1.01740 0.97611 1.18761 0.83740 0.79824 0.81278 1.90777 1.21945 1.48865 1.74638 1.21760 0.86489 0.97070 0.98587 0.92494 0.94509 0.93848 0.89963 0.91387 0.95781 0.88326 0.87739 0.89912 0.93727 0.92018 0.86578 0.87831 0.83237 0.80258 0.79986 0.82443 0.96909 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 2 C 0.01 0.72 5.45 84.65 0.46 1.18 16 3 Si 0.95 46.93 24.35 68.60 1.67 48.60 16 4 H -0.27 -12.44 6.89 99.48 0.69 -11.75 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 7 C -0.52 -31.33 9.15 25.60 0.23 -31.09 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 9 C 0.02 0.97 1.85 -11.49 -0.02 0.95 16 10 H 0.03 1.37 7.21 -2.39 -0.02 1.36 16 11 C -0.12 -5.36 4.73 30.68 0.15 -5.21 16 12 C -0.11 -3.84 6.09 30.65 0.19 -3.65 16 13 C 0.06 1.84 5.05 86.32 0.44 2.27 16 14 N -0.54 -18.18 4.86 -896.36 -4.35 -22.54 16 15 C 0.06 1.66 5.36 86.30 0.46 2.12 16 16 C -0.17 -4.55 4.84 30.59 0.15 -4.40 16 17 C 0.12 2.66 5.75 86.38 0.50 3.16 16 18 N -0.58 -14.77 2.62 -762.95 -2.00 -16.77 16 19 C 0.57 15.41 8.02 86.82 0.70 16.10 16 20 O -0.50 -16.48 17.67 -3.55 -0.06 -16.54 16 21 C -0.16 -3.40 6.40 -20.00 -0.13 -3.53 16 22 C -0.05 -0.68 10.09 22.44 0.23 -0.45 16 23 C -0.08 -0.53 10.04 22.36 0.22 -0.31 16 24 C -0.08 -0.45 10.04 22.36 0.22 -0.23 16 25 C -0.04 -0.51 10.09 22.44 0.23 -0.29 16 26 C -0.16 -3.13 6.40 -20.00 -0.13 -3.26 16 27 C 0.57 14.13 8.02 86.82 0.70 14.83 16 28 O -0.49 -13.77 17.68 -3.57 -0.06 -13.83 16 29 C 0.09 3.79 4.06 86.33 0.35 4.14 16 30 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 31 H 0.04 1.66 3.34 -2.39 -0.01 1.66 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.02 0.77 6.75 -2.39 -0.02 0.75 16 36 H 0.10 2.39 8.06 -2.38 -0.02 2.38 16 37 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.52 6.51 -2.39 -0.02 1.50 16 40 H 0.06 1.79 6.68 -2.38 -0.02 1.77 16 41 H 0.12 2.18 7.96 -2.39 -0.02 2.16 16 42 H 0.10 2.24 7.96 -2.38 -0.02 2.22 16 43 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 45 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 46 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.01 0.58 6.61 -2.39 -0.02 0.56 16 48 H 0.05 2.44 8.12 -2.39 -0.02 2.42 16 Total: -1.00 -80.66 381.46 1.32 -79.34 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.89 Total: 10.71 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.94 Total: -7.68 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -6.06 Total: -100.60 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.13 Total: -30.38 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.67 Total: 48.60 kcal Total: -80.66 1.32 -79.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595610708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.279 kcal (2) G-P(sol) polarization free energy of solvation -80.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds