Wall clock time and date at job start Wed Apr 1 2020 00:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48508 * 109.47072 * 90.00126 * 3 2 1 5 5 H 1.48501 * 109.47196 * 330.00534 * 3 2 1 6 6 H 1.48500 * 109.47404 * 210.00332 * 3 2 1 7 7 C 1.37877 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47080 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47271 * 180.02562 * 10 9 7 12 12 C 1.48626 * 110.99759 * 52.56607 * 11 10 9 13 13 C 1.55144 * 103.34742 * 159.20230 * 12 11 10 14 14 C 1.53692 * 102.67426 * 323.33478 * 13 12 11 15 15 C 1.48162 * 111.00112 * 169.99631 * 11 10 9 16 16 C 1.50246 * 111.32457 * 143.18244 * 14 13 12 17 17 C 1.37702 * 133.51187 * 300.27207 * 16 14 13 18 18 C 1.38350 * 120.03359 * 179.91566 * 17 16 14 19 19 C 1.38300 * 119.85004 * 0.02562 * 18 17 16 20 20 C 1.37930 * 120.32106 * 0.05869 * 19 18 17 21 21 C 1.39177 * 105.86457 * 120.31293 * 16 14 13 22 22 N 1.39659 * 110.23048 * 0.07614 * 21 16 14 23 23 C 1.46506 * 123.91787 * 180.02562 * 22 21 16 24 24 C 1.54028 * 113.81265 * 222.04015 * 23 22 21 25 25 O 1.44449 * 85.42444 * 223.23791 * 24 23 22 26 26 C 1.44180 * 93.37906 * 24.09103 * 25 24 23 27 27 C 1.34689 * 112.16033 * 0.02757 * 22 21 16 28 28 O 1.21293 * 126.66079 * 179.88353 * 27 22 21 29 29 H 0.96998 * 119.99627 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47394 * 300.00532 * 9 7 2 31 31 H 1.09002 * 109.46630 * 60.00819 * 9 7 2 32 32 H 1.09002 * 109.46955 * 300.00206 * 10 9 7 33 33 H 1.08998 * 109.47504 * 59.99902 * 10 9 7 34 34 H 1.08999 * 110.64339 * 277.66894 * 12 11 10 35 35 H 1.08994 * 110.64486 * 40.73692 * 12 11 10 36 36 H 1.09007 * 110.76809 * 205.03680 * 13 12 11 37 37 H 1.09000 * 110.93023 * 81.70655 * 13 12 11 38 38 H 1.08994 * 110.01112 * 333.65138 * 15 11 10 39 39 H 1.09000 * 110.00836 * 94.97984 * 15 11 10 40 40 H 1.08003 * 119.98271 * 359.91545 * 17 16 14 41 41 H 1.08007 * 120.07510 * 180.02562 * 18 17 16 42 42 H 1.08002 * 119.84170 * 180.02562 * 19 18 17 43 43 H 1.08007 * 119.90071 * 179.97438 * 20 19 18 44 44 H 1.08999 * 112.99687 * 353.86842 * 23 22 21 45 45 H 1.09000 * 113.87248 * 337.34162 * 24 23 22 46 46 H 1.08997 * 113.86291 * 109.05155 * 24 23 22 47 47 H 1.09000 * 113.86602 * 221.76963 * 26 25 24 48 48 H 1.08994 * 113.98187 * 90.07196 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4465 2.6527 -0.6999 6 1 3.5467 1.4403 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 0.5146 -4.9735 -1.1033 13 6 0.2505 -6.4904 -1.2936 14 6 1.6375 -7.1070 -1.0523 15 6 2.4252 -6.0751 -0.2415 16 6 1.5335 -8.4202 -0.3298 17 6 1.0181 -8.7919 0.8919 18 6 1.0686 -10.1156 1.2910 19 6 1.6381 -11.0637 0.4606 20 6 2.1572 -10.6957 -0.7632 21 6 2.1109 -9.3651 -1.1728 22 7 2.5616 -8.7549 -2.3454 23 6 3.2179 -9.4732 -3.4407 24 6 4.4279 -8.7287 -4.0358 25 8 3.8935 -9.1238 -5.3183 26 6 2.5502 -9.2601 -4.8123 27 6 2.3230 -7.4293 -2.3524 28 8 2.6057 -6.6472 -3.2353 29 1 -0.4849 -0.8401 -0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6242 -2.5567 -0.8904 32 1 2.8720 -3.6042 -0.8905 33 1 2.8720 -3.6043 0.8894 34 1 -0.4006 -4.4576 -0.8126 35 1 0.9298 -4.5387 -2.0124 36 1 -0.0942 -6.6987 -2.3066 37 1 -0.4679 -6.8557 -0.5597 38 1 3.2960 -5.7426 -0.8063 39 1 2.7398 -6.5074 0.7084 40 1 0.5743 -8.0496 1.5389 41 1 0.6642 -10.4079 2.2488 42 1 1.6771 -12.0970 0.7720 43 1 2.6007 -11.4417 -1.4062 44 1 3.4165 -10.5188 -3.2055 45 1 4.4117 -7.6524 -3.8640 46 1 5.3880 -9.1859 -3.7969 47 1 2.0244 -10.1379 -5.1880 48 1 1.9576 -8.3476 -4.8773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:50 Heat of formation + Delta-G solvation = 6.496272 kcal Electronic energy + Delta-G solvation = -30524.368164 eV Core-core repulsion = 26545.851951 eV Total energy + Delta-G solvation = -3978.516213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53739 -40.46480 -38.80103 -37.98964 -36.01444 -34.30128 -32.79240 -30.77720 -30.63689 -29.01165 -28.57217 -27.91720 -27.00777 -24.69136 -23.52043 -22.83352 -22.20491 -21.93471 -20.96610 -20.05799 -19.33309 -17.95297 -17.31391 -16.76515 -16.65822 -16.50498 -16.29654 -15.73456 -15.35629 -14.90436 -14.76454 -14.30105 -14.20530 -13.98991 -13.80618 -13.70326 -13.57308 -13.25730 -13.09441 -12.70620 -12.53663 -12.27043 -12.21386 -11.88640 -11.71157 -11.60785 -11.44092 -11.35461 -11.20278 -10.83927 -10.77120 -10.63924 -10.32423 -10.12487 -10.06692 -9.79988 -9.71315 -9.14714 -8.57178 -8.30223 -8.26043 -8.00085 -6.34080 -4.02633 0.85128 1.01608 2.08991 2.23226 3.18143 3.38098 3.45500 3.49532 3.65131 3.76615 3.83868 3.98828 4.27863 4.39649 4.49774 4.56579 4.58558 4.60418 4.65849 4.77895 4.84353 5.00242 5.08129 5.08990 5.21614 5.34440 5.35309 5.43676 5.45082 5.46914 5.58151 5.62971 5.69034 5.72210 5.77624 5.85323 6.03692 6.07186 6.18070 6.22814 6.27343 6.29489 6.32572 6.38043 6.75316 6.76689 7.20100 7.23665 7.50437 7.58330 7.65248 8.25115 8.48819 8.91070 9.69301 11.07146 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002957 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.778421 B = 9466.731399 C =10922.404983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.012 3.988 10 C 0.059 3.941 11 N -0.512 5.512 12 C 0.040 3.960 13 C -0.093 4.093 14 C -0.064 4.064 15 C 0.065 3.935 16 C -0.115 4.115 17 C -0.056 4.056 18 C -0.139 4.139 19 C -0.086 4.086 20 C -0.141 4.141 21 C 0.139 3.861 22 N -0.548 5.548 23 C 0.072 3.928 24 C 0.027 3.973 25 O -0.370 6.370 26 C 0.030 3.970 27 C 0.540 3.460 28 O -0.481 6.481 29 H 0.269 0.731 30 H 0.016 0.984 31 H 0.010 0.990 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -27.733 -1.717 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.025 4.025 10 C -0.068 4.068 11 N -0.236 5.236 12 C -0.087 4.087 13 C -0.131 4.131 14 C -0.068 4.068 15 C -0.064 4.064 16 C -0.118 4.118 17 C -0.074 4.074 18 C -0.158 4.158 19 C -0.105 4.105 20 C -0.162 4.162 21 C 0.044 3.956 22 N -0.272 5.272 23 C -0.031 4.031 24 C -0.051 4.051 25 O -0.287 6.287 26 C -0.047 4.047 27 C 0.329 3.671 28 O -0.353 6.353 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.146 -25.683 -2.128 25.963 hybrid contribution 0.728 -1.783 -0.701 2.049 sum 3.874 -27.467 -2.829 27.882 Atomic orbital electron populations 1.70747 1.06854 1.30643 1.46661 1.25823 0.96555 1.02647 0.93769 0.83513 0.74667 0.75106 0.76735 1.21428 1.20994 1.21537 1.22023 0.94288 0.91984 1.55843 0.93385 1.19271 0.94609 0.92074 0.96524 1.22397 0.96895 0.87913 0.99556 1.65091 1.13136 1.03146 1.42240 1.23265 0.97660 0.93946 0.93866 1.22378 0.92591 0.95911 1.02225 1.20416 0.99052 0.94725 0.92624 1.22651 0.94629 0.90645 0.98445 1.19568 1.03252 0.93209 0.95798 1.20378 0.96779 0.96431 0.93812 1.21087 1.01750 0.92527 1.00441 1.20867 0.96908 0.99748 0.92981 1.20273 1.05211 0.92499 0.98223 1.18350 0.96955 0.93912 0.86353 1.46141 1.55995 1.08573 1.16518 1.24953 0.93674 0.98629 0.85827 1.24593 0.97204 1.01808 0.81482 1.89769 1.20313 1.88734 1.29925 1.24440 0.87295 1.02944 0.90063 1.20423 0.77689 0.80620 0.88397 1.90801 1.51611 1.52108 1.40747 0.92040 0.96589 0.97219 0.95534 0.91570 0.89114 0.92899 0.90963 0.89241 0.93255 0.89488 0.84727 0.85203 0.85287 0.86038 0.85403 0.88010 0.88339 0.88311 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.65 55.43 0.76 -27.55 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.53 9.11 -34.44 -0.31 -17.84 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.33 3.95 -27.88 -0.11 0.22 16 10 C 0.06 1.29 4.97 -3.82 -0.02 1.27 16 11 N -0.51 -9.28 5.41 -230.61 -1.25 -10.52 16 12 C 0.04 0.70 5.11 -1.73 -0.01 0.69 16 13 C -0.09 -1.26 6.20 -25.24 -0.16 -1.41 16 14 C -0.06 -0.86 0.87 -156.76 -0.14 -0.99 16 15 C 0.06 1.00 6.06 -3.10 -0.02 0.98 16 16 C -0.12 -1.28 4.77 -104.69 -0.50 -1.78 16 17 C -0.06 -0.53 9.92 -39.74 -0.39 -0.92 16 18 C -0.14 -1.04 10.06 -39.52 -0.40 -1.43 16 19 C -0.09 -0.59 10.02 -39.67 -0.40 -0.98 16 20 C -0.14 -1.09 9.76 -39.30 -0.38 -1.48 16 21 C 0.14 1.42 6.71 -83.55 -0.56 0.86 16 22 N -0.55 -6.07 2.98 -113.39 -0.34 -6.40 16 23 C 0.07 0.66 4.74 -66.85 -0.32 0.35 16 24 C 0.03 0.28 8.62 37.64 0.32 0.60 16 25 O -0.37 -4.43 12.46 -35.23 -0.44 -4.87 16 26 C 0.03 0.30 8.69 37.64 0.33 0.63 16 27 C 0.54 7.53 5.84 -11.14 -0.07 7.46 16 28 O -0.48 -8.09 14.80 5.55 0.08 -8.01 16 29 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 30 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 31 H 0.01 0.26 6.66 -51.93 -0.35 -0.09 16 32 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.61 7.69 -51.93 -0.40 1.21 16 35 H 0.05 1.02 7.98 -51.93 -0.41 0.60 16 36 H 0.07 0.93 7.84 -51.92 -0.41 0.53 16 37 H 0.09 1.08 7.83 -51.93 -0.41 0.67 16 38 H 0.05 0.82 7.16 -51.93 -0.37 0.45 16 39 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.68 7.36 -52.48 -0.39 0.30 16 44 H 0.13 0.82 7.24 -51.93 -0.38 0.44 16 45 H 0.10 1.32 6.03 -51.93 -0.31 1.00 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -33.70 381.27 -10.79 -44.49 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.04 Total: -0.21 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.22 Total: -13.41 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.83 Total: -44.47 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.36 Total: -12.88 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.70 -10.79 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.986 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds