Wall clock time and date at job start Wed Apr 1 2020 00:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48491 * 109.47242 * 269.99802 * 3 2 1 5 5 H 1.48499 * 109.46971 * 30.00185 * 3 2 1 6 6 H 1.48505 * 109.46656 * 149.99848 * 3 2 1 7 7 C 1.37880 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99729 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47165 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.48608 * 111.00438 * 287.44098 * 11 10 9 13 13 C 1.55147 * 103.35043 * 200.81226 * 12 11 10 14 14 C 1.53665 * 102.68713 * 36.65020 * 13 12 11 15 15 C 1.48162 * 110.99662 * 169.99823 * 11 10 9 16 16 C 1.50245 * 111.37010 * 216.84747 * 14 13 12 17 17 C 1.37702 * 133.51670 * 59.39851 * 16 14 13 18 18 C 1.38362 * 120.03519 * 179.97438 * 17 16 14 19 19 C 1.38299 * 119.84574 * 359.97438 * 18 17 16 20 20 C 1.37932 * 120.32216 * 359.97438 * 19 18 17 21 21 C 1.39177 * 105.86477 * 239.18212 * 16 14 13 22 22 N 1.39658 * 110.22912 * 0.42976 * 21 16 14 23 23 C 1.46500 * 123.91789 * 179.85349 * 22 21 16 24 24 C 1.54038 * 113.81651 * 144.20548 * 23 22 21 25 25 O 1.44447 * 85.42534 * 91.80654 * 24 23 22 26 26 C 1.44180 * 93.37741 * 24.08716 * 25 24 23 27 27 C 1.34695 * 112.15838 * 359.58280 * 22 21 16 28 28 O 1.21288 * 126.65811 * 180.17644 * 27 22 21 29 29 H 0.97003 * 119.99930 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47776 * 59.99682 * 9 7 2 31 31 H 1.09003 * 109.46898 * 299.99369 * 9 7 2 32 32 H 1.08996 * 109.46960 * 59.99272 * 10 9 7 33 33 H 1.09003 * 109.46770 * 299.99537 * 10 9 7 34 34 H 1.09006 * 110.64757 * 319.27725 * 12 11 10 35 35 H 1.09001 * 110.64836 * 82.18250 * 12 11 10 36 36 H 1.09006 * 110.76287 * 278.35360 * 13 12 11 37 37 H 1.08998 * 110.76925 * 154.95268 * 13 12 11 38 38 H 1.08999 * 110.01496 * 26.35285 * 15 11 10 39 39 H 1.09004 * 110.05431 * 264.99500 * 15 11 10 40 40 H 1.07997 * 119.98767 * 359.96746 * 17 16 14 41 41 H 1.08000 * 120.07570 * 179.97438 * 18 17 16 42 42 H 1.08005 * 119.83777 * 180.02562 * 19 18 17 43 43 H 1.07998 * 119.89391 * 180.02562 * 20 19 18 44 44 H 1.08997 * 113.00045 * 12.37875 * 23 22 21 45 45 H 1.09000 * 113.86179 * 205.91208 * 24 23 22 46 46 H 1.09000 * 113.86272 * 337.61578 * 24 23 22 47 47 H 1.08996 * 113.86424 * 221.76247 * 26 25 24 48 48 H 1.09010 * 113.86452 * 90.06288 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4904 -2.6367 -0.0001 12 6 6.0230 -2.2208 -1.3237 13 6 7.4687 -2.7838 -1.3211 14 6 7.3093 -4.1197 -0.5786 15 6 6.0213 -3.9990 0.2400 16 6 8.4976 -4.4056 0.2952 17 6 9.0798 -3.7409 1.3514 18 6 10.1978 -4.2703 1.9712 19 6 10.7284 -5.4680 1.5277 20 6 10.1480 -6.1378 0.4708 21 6 9.0205 -5.6136 -0.1570 22 7 8.2702 -6.0918 -1.2335 23 6 8.5603 -7.3412 -1.9412 24 6 7.3026 -8.0973 -2.4096 25 8 7.4578 -7.3580 -3.6408 26 6 8.8702 -7.1507 -3.4379 27 6 7.2454 -5.2738 -1.5416 28 8 6.4297 -5.4359 -2.4245 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6809 0.8904 31 1 3.8751 -0.6798 -0.8895 32 1 3.6583 -3.1504 -0.8902 33 1 3.6577 -3.1507 0.8897 34 1 5.4391 -2.6650 -2.1298 35 1 6.0312 -1.1343 -1.4105 36 1 8.1415 -2.1186 -0.7797 37 1 7.8217 -2.9473 -2.3393 38 1 5.2982 -4.7447 -0.0901 39 1 6.2386 -4.1340 1.2996 40 1 8.6635 -2.8059 1.6961 41 1 10.6552 -3.7493 2.7993 42 1 11.6009 -5.8812 2.0119 43 1 10.5678 -7.0728 0.1304 44 1 9.2821 -7.9690 -1.4187 45 1 7.4492 -9.1718 -2.5189 46 1 6.4017 -7.8428 -1.8514 47 1 9.2098 -6.1471 -3.6937 48 1 9.4965 -7.9356 -3.8620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:00 Heat of formation + Delta-G solvation = 18.931564 kcal Electronic energy + Delta-G solvation = -30629.539335 eV Core-core repulsion = 26651.562357 eV Total energy + Delta-G solvation = -3977.976978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49698 -40.37772 -38.72161 -37.80682 -35.88805 -34.06678 -32.56425 -30.94010 -30.54986 -29.25029 -28.65133 -28.29830 -26.95959 -25.05192 -23.65569 -22.84528 -21.98504 -21.61094 -20.60594 -19.95465 -19.34501 -17.66735 -17.18781 -16.82469 -16.53825 -16.25983 -16.07053 -15.78155 -15.49548 -15.03679 -14.79625 -14.44439 -14.24244 -14.09639 -14.05532 -13.76076 -13.39370 -13.10411 -12.94815 -12.71845 -12.51423 -12.28093 -12.14500 -11.95524 -11.70826 -11.49458 -11.44582 -11.26172 -11.09860 -10.89502 -10.80240 -10.62700 -10.09089 -9.90155 -9.89235 -9.82638 -9.70021 -9.17280 -9.12394 -8.48817 -8.21480 -8.00943 -5.99979 -3.97976 0.89597 1.03975 2.21508 2.22520 3.20058 3.35696 3.40424 3.42628 3.48629 3.81348 3.87963 4.05751 4.37692 4.42014 4.50356 4.52516 4.59900 4.66730 4.70031 4.78411 4.80334 4.84377 5.09789 5.16313 5.22003 5.31092 5.34615 5.36245 5.46906 5.50850 5.58105 5.71088 5.74145 5.79407 5.81891 5.89354 5.99582 6.09053 6.16924 6.23841 6.24850 6.33788 6.37133 6.43842 6.78797 6.79993 7.12545 7.17757 7.48672 7.62115 7.73459 7.87566 8.57705 9.04424 9.62450 11.13507 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.003094 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.352313 B = 9047.176380 C =10406.510080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.003 4.003 10 C 0.061 3.939 11 N -0.513 5.513 12 C 0.036 3.964 13 C -0.092 4.092 14 C -0.065 4.065 15 C 0.066 3.934 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.141 4.141 19 C -0.086 4.086 20 C -0.143 4.143 21 C 0.144 3.856 22 N -0.542 5.542 23 C 0.071 3.929 24 C 0.034 3.966 25 O -0.352 6.352 26 C 0.023 3.977 27 C 0.533 3.467 28 O -0.456 6.456 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.011 0.989 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.763 -15.832 0.604 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.041 4.041 10 C -0.066 4.066 11 N -0.237 5.237 12 C -0.091 4.091 13 C -0.130 4.130 14 C -0.069 4.069 15 C -0.063 4.063 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.160 4.160 19 C -0.105 4.105 20 C -0.164 4.164 21 C 0.049 3.951 22 N -0.265 5.265 23 C -0.033 4.033 24 C -0.044 4.044 25 O -0.270 6.270 26 C -0.055 4.055 27 C 0.321 3.679 28 O -0.325 6.325 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.015 -15.452 0.181 31.122 hybrid contribution 0.233 0.027 -0.546 0.594 sum 27.248 -15.425 -0.365 31.313 Atomic orbital electron populations 1.69919 1.06334 1.26865 1.51256 1.24996 0.94710 0.99176 0.94515 0.86759 0.80526 0.83464 0.78489 1.20377 1.21476 1.18683 1.21094 0.89468 0.94508 1.50874 0.91164 1.19499 0.96367 0.91446 0.96794 1.22341 0.83451 1.00707 1.00135 1.65051 1.10874 1.19492 1.28284 1.23323 0.92935 1.01539 0.91351 1.22339 0.98908 0.92285 0.99464 1.20420 0.95768 0.96035 0.94635 1.22625 0.91606 0.92634 0.99432 1.19562 0.97857 0.95520 0.98923 1.20381 0.94446 0.99544 0.92997 1.21081 0.96986 0.96726 1.01164 1.20860 0.99284 0.94948 0.95413 1.20266 0.95761 1.01571 0.98817 1.18300 0.93613 0.94187 0.88992 1.45757 1.28749 1.21455 1.30576 1.23990 0.99156 0.85745 0.94457 1.24285 0.98275 0.96445 0.85380 1.89954 1.21649 1.73075 1.42327 1.24388 0.85718 1.02922 0.92482 1.20431 0.79822 0.83376 0.84271 1.90878 1.36739 1.74463 1.30417 0.92769 0.95685 0.97111 0.94932 0.91447 0.92865 0.89276 0.89313 0.90963 0.93198 0.89419 0.84726 0.85248 0.85343 0.86069 0.87567 0.88738 0.88643 0.89086 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 -0.08 4.13 -27.88 -0.12 -0.20 16 10 C 0.06 1.28 4.65 -3.82 -0.02 1.27 16 11 N -0.51 -9.06 5.26 -230.60 -1.21 -10.27 16 12 C 0.04 0.59 5.92 -1.74 -0.01 0.58 16 13 C -0.09 -1.21 6.20 -25.25 -0.16 -1.37 16 14 C -0.06 -0.86 0.87 -156.76 -0.14 -1.00 16 15 C 0.07 1.00 6.03 -3.08 -0.02 0.98 16 16 C -0.12 -1.28 4.77 -104.69 -0.50 -1.78 16 17 C -0.06 -0.52 9.92 -39.73 -0.39 -0.92 16 18 C -0.14 -1.05 10.06 -39.51 -0.40 -1.45 16 19 C -0.09 -0.58 10.02 -39.67 -0.40 -0.98 16 20 C -0.14 -1.10 9.76 -39.30 -0.38 -1.48 16 21 C 0.14 1.47 6.70 -83.55 -0.56 0.91 16 22 N -0.54 -6.08 2.97 -113.38 -0.34 -6.42 16 23 C 0.07 0.61 4.81 -66.85 -0.32 0.29 16 24 C 0.03 0.33 8.22 37.64 0.31 0.64 16 25 O -0.35 -4.61 10.50 -57.22 -0.60 -5.21 16 26 C 0.02 0.21 8.83 37.64 0.33 0.54 16 27 C 0.53 7.62 5.98 -11.14 -0.07 7.55 16 28 O -0.46 -8.05 14.82 -16.44 -0.24 -8.29 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.01 0.26 6.80 -51.93 -0.35 -0.09 16 32 H 0.03 0.72 7.83 -51.93 -0.41 0.31 16 33 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 34 H 0.05 0.96 7.80 -51.93 -0.41 0.55 16 35 H 0.09 1.44 7.82 -51.93 -0.41 1.04 16 36 H 0.09 1.04 7.83 -51.93 -0.41 0.64 16 37 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 38 H 0.05 0.82 7.36 -51.93 -0.38 0.44 16 39 H 0.09 1.23 7.72 -51.93 -0.40 0.83 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.12 0.66 7.43 -52.49 -0.39 0.27 16 44 H 0.11 0.57 7.33 -51.93 -0.38 0.19 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 1.11 7.47 -51.93 -0.39 0.72 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -35.14 381.15 -11.05 -46.20 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.24 Total: -1.49 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.26 Total: -10.08 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.78 Total: -44.39 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.84 Total: -13.50 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.14 -11.05 -46.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.127 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds