Wall clock time and date at job start Wed Apr 1 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48491 * 109.47242 * 269.99802 * 3 2 1 5 5 H 1.48499 * 109.46971 * 30.00185 * 3 2 1 6 6 H 1.48505 * 109.46656 * 149.99848 * 3 2 1 7 7 C 1.37880 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99729 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47165 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.48608 * 111.00438 * 287.44098 * 11 10 9 13 13 C 1.55147 * 103.35043 * 200.81226 * 12 11 10 14 14 C 1.53665 * 102.68713 * 36.65020 * 13 12 11 15 15 C 1.48162 * 110.99662 * 169.99823 * 11 10 9 16 16 C 1.50245 * 111.37010 * 216.84747 * 14 13 12 17 17 C 1.37702 * 133.51670 * 59.39851 * 16 14 13 18 18 C 1.38362 * 120.03519 * 179.97438 * 17 16 14 19 19 C 1.38299 * 119.84574 * 359.97438 * 18 17 16 20 20 C 1.37932 * 120.32216 * 359.97438 * 19 18 17 21 21 C 1.39177 * 105.86477 * 239.18212 * 16 14 13 22 22 N 1.39658 * 110.22912 * 0.42976 * 21 16 14 23 23 C 1.46500 * 123.91789 * 179.85349 * 22 21 16 24 24 C 1.54038 * 113.81651 * 144.20548 * 23 22 21 25 25 O 1.44447 * 85.42534 * 91.80654 * 24 23 22 26 26 C 1.44180 * 93.37741 * 24.08716 * 25 24 23 27 27 C 1.34695 * 112.15838 * 359.58280 * 22 21 16 28 28 O 1.21288 * 126.65811 * 180.17644 * 27 22 21 29 29 H 0.97003 * 119.99930 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47776 * 59.99682 * 9 7 2 31 31 H 1.09003 * 109.46898 * 299.99369 * 9 7 2 32 32 H 1.08996 * 109.46960 * 59.99272 * 10 9 7 33 33 H 1.09003 * 109.46770 * 299.99537 * 10 9 7 34 34 H 1.09006 * 110.64757 * 319.27725 * 12 11 10 35 35 H 1.09001 * 110.64836 * 82.18250 * 12 11 10 36 36 H 1.09006 * 110.76287 * 278.35360 * 13 12 11 37 37 H 1.08998 * 110.76925 * 154.95268 * 13 12 11 38 38 H 1.08999 * 110.01496 * 26.35285 * 15 11 10 39 39 H 1.09004 * 110.05431 * 264.99500 * 15 11 10 40 40 H 1.07997 * 119.98767 * 359.96746 * 17 16 14 41 41 H 1.08000 * 120.07570 * 179.97438 * 18 17 16 42 42 H 1.08005 * 119.83777 * 180.02562 * 19 18 17 43 43 H 1.07998 * 119.89391 * 180.02562 * 20 19 18 44 44 H 1.08997 * 113.00045 * 12.37875 * 23 22 21 45 45 H 1.09000 * 113.86179 * 205.91208 * 24 23 22 46 46 H 1.09000 * 113.86272 * 337.61578 * 24 23 22 47 47 H 1.08996 * 113.86424 * 221.76247 * 26 25 24 48 48 H 1.09010 * 113.86452 * 90.06288 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4904 -2.6367 -0.0001 12 6 6.0230 -2.2208 -1.3237 13 6 7.4687 -2.7838 -1.3211 14 6 7.3093 -4.1197 -0.5786 15 6 6.0213 -3.9990 0.2400 16 6 8.4976 -4.4056 0.2952 17 6 9.0798 -3.7409 1.3514 18 6 10.1978 -4.2703 1.9712 19 6 10.7284 -5.4680 1.5277 20 6 10.1480 -6.1378 0.4708 21 6 9.0205 -5.6136 -0.1570 22 7 8.2702 -6.0918 -1.2335 23 6 8.5603 -7.3412 -1.9412 24 6 7.3026 -8.0973 -2.4096 25 8 7.4578 -7.3580 -3.6408 26 6 8.8702 -7.1507 -3.4379 27 6 7.2454 -5.2738 -1.5416 28 8 6.4297 -5.4359 -2.4245 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6809 0.8904 31 1 3.8751 -0.6798 -0.8895 32 1 3.6583 -3.1504 -0.8902 33 1 3.6577 -3.1507 0.8897 34 1 5.4391 -2.6650 -2.1298 35 1 6.0312 -1.1343 -1.4105 36 1 8.1415 -2.1186 -0.7797 37 1 7.8217 -2.9473 -2.3393 38 1 5.2982 -4.7447 -0.0901 39 1 6.2386 -4.1340 1.2996 40 1 8.6635 -2.8059 1.6961 41 1 10.6552 -3.7493 2.7993 42 1 11.6009 -5.8812 2.0119 43 1 10.5678 -7.0728 0.1304 44 1 9.2821 -7.9690 -1.4187 45 1 7.4492 -9.1718 -2.5189 46 1 6.4017 -7.8428 -1.8514 47 1 9.2098 -6.1471 -3.6937 48 1 9.4965 -7.9356 -3.8620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:58 Heat of formation + Delta-G solvation = -4.515745 kcal Electronic energy + Delta-G solvation = -30630.556086 eV Core-core repulsion = 26651.562357 eV Total energy + Delta-G solvation = -3978.993729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.37779 -41.19337 -39.66213 -39.02578 -36.73825 -35.75121 -34.31265 -32.31537 -31.23679 -30.77491 -29.47553 -29.35300 -27.65187 -26.68473 -24.89161 -23.55053 -23.27151 -22.70541 -21.63967 -21.55260 -20.17032 -19.03776 -18.48429 -17.99571 -17.41373 -17.10920 -16.84810 -16.79818 -16.53855 -16.33911 -15.98715 -15.94532 -15.55677 -15.15805 -14.86188 -14.75884 -14.71003 -14.48227 -14.25487 -13.83580 -13.77656 -13.62336 -13.16601 -13.02738 -12.94337 -12.77810 -12.68758 -12.55611 -12.39892 -11.87794 -11.82981 -11.82106 -11.69211 -11.55682 -11.44321 -11.35939 -10.91014 -10.83111 -10.78153 -9.78571 -9.53908 -8.94927 -8.31642 -6.36901 0.16825 0.42507 1.25938 1.35955 1.38147 1.44216 1.51898 2.36092 2.48599 2.75910 2.80643 3.03728 3.12613 3.13394 3.20472 3.52505 3.59179 3.71868 3.89270 4.00124 4.07282 4.15861 4.23617 4.24497 4.27309 4.32384 4.37071 4.41735 4.52790 4.56168 4.62498 4.64810 4.70090 4.74167 4.82180 4.84548 4.89902 4.95012 5.05654 5.12916 5.14009 5.20859 5.37965 5.51303 5.58558 5.62373 5.64966 5.71133 5.81583 5.95167 6.11696 6.25028 6.70024 6.75886 7.27804 8.85395 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.003094 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.352313 B = 9047.176380 C =10406.510080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.538 4.538 8 H 0.027 0.973 9 C 0.007 3.993 10 C 0.074 3.926 11 N -0.509 5.509 12 C 0.032 3.968 13 C -0.080 4.080 14 C -0.063 4.063 15 C 0.069 3.931 16 C -0.134 4.134 17 C -0.066 4.066 18 C -0.134 4.134 19 C -0.079 4.079 20 C -0.133 4.133 21 C 0.124 3.876 22 N -0.538 5.538 23 C 0.072 3.928 24 C 0.030 3.970 25 O -0.401 6.401 26 C 0.025 3.975 27 C 0.526 3.474 28 O -0.506 6.506 29 H 0.268 0.732 30 H 0.030 0.970 31 H 0.016 0.984 32 H 0.010 0.990 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.133 0.867 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.961 -16.144 2.163 36.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.031 4.031 10 C -0.054 4.054 11 N -0.233 5.233 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.067 4.067 15 C -0.059 4.059 16 C -0.137 4.137 17 C -0.084 4.084 18 C -0.153 4.153 19 C -0.097 4.097 20 C -0.154 4.154 21 C 0.030 3.970 22 N -0.260 5.260 23 C -0.031 4.031 24 C -0.047 4.047 25 O -0.320 6.320 26 C -0.053 4.053 27 C 0.314 3.686 28 O -0.379 6.379 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.150 0.850 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 32.273 -15.794 1.771 35.974 hybrid contribution -1.373 0.002 -0.983 1.688 sum 30.900 -15.792 0.788 34.711 Atomic orbital electron populations 1.70073 1.08390 1.28327 1.52397 1.26029 0.95660 1.03680 0.93769 0.85584 0.79661 0.77741 0.79248 1.19252 1.20616 1.16587 1.21406 0.91983 0.93180 1.51044 0.95467 1.19339 0.93258 0.93528 0.96946 1.22014 0.86050 0.98401 0.98949 1.64994 1.08123 1.21186 1.28970 1.23365 0.94736 1.01702 0.89807 1.22273 0.96838 0.92616 1.00063 1.20298 0.95791 0.95791 0.94797 1.22607 0.92289 0.90471 1.00582 1.19455 0.97466 0.96835 0.99960 1.20510 0.95326 0.99730 0.92828 1.21430 0.95806 0.96951 1.01095 1.21316 0.99684 0.94190 0.94513 1.20657 0.94192 1.02374 0.98147 1.18545 0.94823 0.94345 0.89245 1.45712 1.27831 1.21728 1.30775 1.24164 0.99244 0.84883 0.94778 1.24451 0.97685 0.98317 0.84277 1.89916 1.24345 1.74034 1.43725 1.24610 0.84340 1.03504 0.92805 1.20574 0.80055 0.84156 0.83818 1.90846 1.38797 1.75718 1.32556 0.92354 0.95189 0.96560 0.97151 0.91860 0.95452 0.88841 0.87176 0.90801 0.95498 0.88027 0.84844 0.82832 0.81887 0.83147 0.83085 0.84978 0.91863 0.90597 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 2 C 0.01 0.33 5.47 84.66 0.46 0.79 16 3 Si 0.96 45.85 27.47 68.60 1.88 47.74 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.54 -32.86 9.66 25.60 0.25 -32.61 16 8 H 0.03 1.83 7.99 -2.92 -0.02 1.81 16 9 C 0.01 0.36 4.13 29.85 0.12 0.48 16 10 C 0.07 3.29 4.65 86.31 0.40 3.70 16 11 N -0.51 -18.48 5.26 -883.48 -4.64 -23.12 16 12 C 0.03 1.07 5.92 86.71 0.51 1.59 16 13 C -0.08 -2.11 6.20 31.55 0.20 -1.92 16 14 C -0.06 -1.69 0.87 -53.64 -0.05 -1.74 16 15 C 0.07 2.18 6.03 86.09 0.52 2.70 16 16 C -0.13 -2.76 4.77 -19.91 -0.09 -2.86 16 17 C -0.07 -1.06 9.92 22.17 0.22 -0.84 16 18 C -0.13 -1.41 10.06 22.31 0.22 -1.19 16 19 C -0.08 -0.64 10.02 22.21 0.22 -0.42 16 20 C -0.13 -1.41 9.76 22.45 0.22 -1.19 16 21 C 0.12 2.23 6.70 38.37 0.26 2.49 16 22 N -0.54 -11.59 2.97 -642.11 -1.91 -13.50 16 23 C 0.07 1.10 4.81 45.69 0.22 1.32 16 24 C 0.03 0.58 8.22 72.30 0.59 1.17 16 25 O -0.40 -10.78 10.50 -127.95 -1.34 -12.12 16 26 C 0.02 0.41 8.83 72.29 0.64 1.05 16 27 C 0.53 15.66 5.98 87.59 0.52 16.18 16 28 O -0.51 -19.38 14.82 17.97 0.27 -19.12 16 29 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 31 H 0.02 0.79 6.80 -2.39 -0.02 0.78 16 32 H 0.01 0.49 7.83 -2.39 -0.02 0.48 16 33 H 0.06 2.82 8.08 -2.39 -0.02 2.80 16 34 H 0.03 1.06 7.80 -2.38 -0.02 1.04 16 35 H 0.09 3.03 7.82 -2.39 -0.02 3.01 16 36 H 0.11 2.42 7.83 -2.38 -0.02 2.41 16 37 H 0.07 1.93 7.84 -2.39 -0.02 1.91 16 38 H 0.03 0.96 7.36 -2.39 -0.02 0.95 16 39 H 0.10 2.88 7.72 -2.38 -0.02 2.87 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.15 0.70 7.43 -2.91 -0.02 0.68 16 44 H 0.15 0.92 7.33 -2.39 -0.02 0.90 16 45 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.60 7.47 -2.39 -0.02 1.58 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -82.90 381.15 0.90 -82.00 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.90 Total: 10.94 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.44 Total: -11.30 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -6.25 Total: -98.14 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.08 Total: -31.24 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.74 kcal Total: -82.90 0.90 -82.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.488 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds