Wall clock time and date at job start Wed Apr 1 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47313 * 299.99741 * 3 2 1 6 6 H 1.48506 * 109.47384 * 59.99786 * 3 2 1 7 7 C 1.39892 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99792 * 197.78134 * 7 2 1 9 9 C 1.41219 * 119.99871 * 17.78848 * 7 2 1 10 10 C 1.40828 * 120.18145 * 24.71107 * 9 7 2 11 11 C 1.36437 * 119.81112 * 180.24830 * 10 9 7 12 12 C 1.39306 * 120.18299 * 359.46711 * 11 10 9 13 13 O 1.35674 * 119.81551 * 180.24948 * 12 11 10 14 14 C 1.42900 * 117.00000 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47151 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47041 * 305.00368 * 15 14 13 17 17 O 1.42897 * 109.46909 * 65.00655 * 15 14 13 18 18 C 1.53001 * 109.47193 * 185.00317 * 15 14 13 19 19 N 1.46499 * 109.47145 * 175.00188 * 18 15 14 20 20 C 1.35306 * 126.49760 * 265.02381 * 19 18 15 21 21 N 1.30755 * 108.77049 * 179.97438 * 20 19 18 22 22 C 1.33576 * 109.14133 * 359.97438 * 21 20 19 23 23 C 1.35024 * 107.98167 * 359.78195 * 22 21 20 24 24 C 1.50659 * 124.45148 * 179.47496 * 23 22 21 25 25 C 1.53396 * 108.44738 * 344.17020 * 24 23 22 26 26 C 1.53121 * 109.44221 * 49.40844 * 25 24 23 27 27 C 1.50870 * 128.02798 * 180.13506 * 22 21 20 28 28 C 1.39308 * 120.36894 * 0.26470 * 12 11 10 29 29 C 1.36436 * 120.18260 * 0.02562 * 28 12 11 30 30 H 0.97005 * 119.99704 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.09631 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.90363 * 179.73073 * 11 10 9 33 33 H 1.08997 * 109.47434 * 300.00209 * 14 13 12 34 34 H 1.09006 * 109.46569 * 60.00569 * 14 13 12 35 35 H 0.96694 * 114.00323 * 60.00083 * 17 15 14 36 36 H 1.09002 * 109.47217 * 295.00244 * 18 15 14 37 37 H 1.09006 * 109.47095 * 55.00283 * 18 15 14 38 38 H 1.08001 * 125.61561 * 359.96327 * 20 19 18 39 39 H 1.09005 * 109.83957 * 224.31917 * 24 23 22 40 40 H 1.08994 * 109.46391 * 103.80090 * 24 23 22 41 41 H 1.09008 * 109.47923 * 289.41979 * 25 24 23 42 42 H 1.08998 * 109.47767 * 169.40061 * 25 24 23 43 43 H 1.09003 * 109.46163 * 169.95954 * 26 25 24 44 44 H 1.09001 * 109.46210 * 49.99589 * 26 25 24 45 45 H 1.09005 * 109.67352 * 283.01937 * 27 22 21 46 46 H 1.08993 * 109.67518 * 43.52498 * 27 22 21 47 47 H 1.08002 * 119.91064 * 180.02562 * 28 12 11 48 48 H 1.07998 * 120.09628 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0495 -1.2338 0.2862 9 6 1.3527 -2.4054 -0.3726 10 6 0.2239 -2.3603 -1.2134 11 6 -0.4067 -3.5180 -1.5650 12 6 0.0697 -4.7430 -1.1037 13 8 -0.5601 -5.8900 -1.4621 14 6 -0.0203 -7.1122 -0.9552 15 6 -0.8572 -8.2885 -1.4621 16 1 -1.9026 -8.1318 -1.1964 17 8 -0.7356 -8.3822 -2.8828 18 6 -0.3567 -9.5844 -0.8209 19 7 -1.2313 -10.6925 -1.2125 20 6 -2.2837 -11.1736 -0.5112 21 7 -2.8183 -12.1620 -1.1798 22 6 -2.1364 -12.3429 -2.3141 23 6 -1.1433 -11.4290 -2.3538 24 6 -0.1394 -11.3093 -3.4707 25 6 -0.1843 -12.5965 -4.3038 26 6 -1.6373 -12.9226 -4.6602 27 6 -2.3886 -13.3621 -3.3976 28 6 1.1891 -4.7969 -0.2761 29 6 1.8277 -3.6481 0.0896 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1438 -1.4116 -1.5760 32 1 -1.2751 -3.4847 -2.2062 33 1 1.0088 -7.2242 -1.2965 34 1 -0.0418 -7.0945 0.1345 35 1 0.1699 -8.5222 -3.1918 36 1 0.6599 -9.7874 -1.1578 37 1 -0.3660 -9.4801 0.2641 38 1 -2.6257 -10.8026 0.4436 39 1 0.8600 -11.1744 -3.0570 40 1 -0.3953 -10.4563 -4.0991 41 1 0.2415 -13.4177 -3.7271 42 1 0.3919 -12.4577 -5.2186 43 1 -1.6592 -13.7278 -5.3946 44 1 -2.1162 -12.0371 -5.0781 45 1 -2.0252 -14.3379 -3.0753 46 1 -3.4568 -13.4188 -3.6066 47 1 1.5524 -5.7508 0.0769 48 1 2.6956 -3.6915 0.7309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296794530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:22 Heat of formation + Delta-G solvation = -23.398667 kcal Electronic energy + Delta-G solvation = -28779.048580 eV Core-core repulsion = 24799.236025 eV Total energy + Delta-G solvation = -3979.812554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48583 -39.21278 -37.80239 -36.84830 -36.20486 -34.14965 -33.39897 -31.37895 -30.12274 -29.49482 -29.10125 -28.99202 -26.39718 -24.72880 -23.75756 -22.69139 -22.16333 -20.94087 -20.81598 -20.61029 -19.06952 -17.77470 -17.43154 -16.84970 -16.64058 -16.25827 -15.73873 -15.27894 -15.05990 -14.91632 -14.47621 -14.28004 -14.09549 -14.01846 -13.76854 -13.57434 -13.39926 -12.94450 -12.72555 -12.50267 -12.39006 -12.25232 -12.20028 -11.90257 -11.58779 -11.29222 -11.19724 -11.13852 -11.11137 -11.06893 -10.97074 -10.72744 -10.46298 -10.08658 -9.92240 -9.89619 -9.51895 -9.42345 -9.09844 -8.20518 -7.73070 -7.12142 -6.79289 -4.32965 1.87160 2.47923 2.70038 2.86716 3.00777 3.04823 3.09573 3.14263 3.66390 3.90045 3.99261 4.24251 4.34329 4.48991 4.54233 4.58760 4.60858 4.68965 4.77451 4.88271 4.93792 5.04536 5.08592 5.24047 5.32060 5.38444 5.42289 5.48028 5.58517 5.63500 5.69001 5.75220 5.81140 5.94419 5.97609 6.07463 6.13583 6.27639 6.63101 6.66572 6.89516 7.02468 7.04502 7.10826 7.33739 7.39314 7.47562 7.69610 7.93386 7.99037 8.12479 8.35111 8.57067 8.82828 8.90422 10.15258 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.001786 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.464523 B =15670.801913 C =15884.537466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.013 4.013 13 O -0.315 6.315 14 C 0.041 3.959 15 C 0.098 3.902 16 H 0.113 0.887 17 O -0.540 6.540 18 C 0.074 3.926 19 N -0.442 5.442 20 C 0.170 3.830 21 N -0.486 5.486 22 C -0.008 4.008 23 C -0.007 4.007 24 C -0.045 4.045 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.031 4.031 28 C -0.167 4.167 29 C -0.199 4.199 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.370 0.630 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.204 0.796 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -20.790 -4.858 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.056 4.056 13 O -0.231 6.231 14 C -0.037 4.037 15 C 0.037 3.963 16 H 0.131 0.869 17 O -0.344 6.344 18 C -0.049 4.049 19 N -0.123 5.123 20 C -0.110 4.110 21 N -0.203 5.203 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.084 4.084 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.069 4.069 28 C -0.186 4.186 29 C -0.219 4.219 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.217 0.783 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.220 0.780 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.110 0.890 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.215 -20.897 -4.615 21.435 hybrid contribution 1.794 1.331 0.404 2.270 sum 0.579 -19.566 -4.211 20.022 Atomic orbital electron populations 1.69839 1.07534 1.29159 1.35758 1.25899 0.94740 1.01324 0.92327 0.86275 0.80944 0.81009 0.78573 1.18457 1.19688 1.20033 1.19504 0.98065 0.91185 1.40438 0.90462 1.17614 0.91819 0.92154 0.89764 1.20991 0.98468 0.96327 0.99510 1.19840 1.00733 0.90207 1.02792 1.18583 0.97066 0.84613 1.05346 1.85891 1.54255 1.11878 1.71088 1.22988 0.96793 0.85174 0.98698 1.22292 1.01941 0.90201 0.81826 0.86931 1.86724 1.32804 1.95163 1.19722 1.22523 0.94270 0.85753 1.02363 1.44913 1.24992 1.25777 1.16662 1.24978 0.89258 0.96324 1.00469 1.69948 1.27947 1.16403 1.06016 1.20427 0.96195 1.00756 0.96337 1.20842 1.03018 0.97388 0.90993 1.20165 0.95430 0.99595 0.93164 1.21543 0.97211 0.96799 0.99529 1.21601 0.95314 1.01757 0.97002 1.19886 1.00773 0.95437 0.90812 1.20367 0.97884 0.97690 1.02627 1.20555 1.03175 0.92504 1.05691 0.90882 0.85627 0.88425 0.92611 0.92069 0.78263 0.88547 0.87339 0.77987 0.91404 0.89460 0.91675 0.91014 0.91234 0.91427 0.91089 0.90741 0.89010 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.31 10.96 55.54 0.61 -19.70 16 2 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.00 9.04 -37.83 -0.34 -12.34 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 10 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16 11 C -0.12 -2.78 9.92 -39.83 -0.40 -3.17 16 12 C -0.01 -0.29 6.71 -38.79 -0.26 -0.55 16 13 O -0.32 -6.06 10.09 -23.57 -0.24 -6.30 16 14 C 0.04 0.54 4.36 37.16 0.16 0.70 16 15 C 0.10 1.06 3.49 -26.73 -0.09 0.96 16 16 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 17 O -0.54 -6.39 11.53 -40.08 -0.46 -6.85 16 18 C 0.07 0.58 5.66 -4.04 -0.02 0.56 16 19 N -0.44 -4.51 2.72 -113.97 -0.31 -4.82 16 20 C 0.17 1.90 12.57 -89.92 -1.13 0.77 16 21 N -0.49 -6.62 11.25 -10.74 -0.12 -6.74 16 22 C -0.01 -0.09 6.98 -82.89 -0.58 -0.67 16 23 C -0.01 -0.07 6.37 -81.85 -0.52 -0.60 16 24 C -0.05 -0.36 5.42 -27.70 -0.15 -0.51 16 25 C -0.11 -0.77 5.91 -26.46 -0.16 -0.93 16 26 C -0.12 -0.89 5.89 -26.49 -0.16 -1.04 16 27 C -0.03 -0.29 6.30 -27.62 -0.17 -0.47 16 28 C -0.17 -3.57 8.96 -39.83 -0.36 -3.92 16 29 C -0.20 -4.73 9.74 -39.25 -0.38 -5.11 16 30 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 31 H 0.13 3.30 6.17 -52.48 -0.32 2.98 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 34 H 0.06 0.75 7.65 -51.93 -0.40 0.36 16 35 H 0.37 3.10 8.50 45.56 0.39 3.48 16 36 H 0.10 0.59 7.96 -51.93 -0.41 0.18 16 37 H 0.11 0.64 8.13 -51.93 -0.42 0.21 16 38 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.07 0.45 7.99 -51.93 -0.42 0.03 16 40 H 0.09 0.73 6.83 -51.93 -0.35 0.37 16 41 H 0.06 0.45 8.12 -51.92 -0.42 0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.64 6.27 -52.49 -0.33 1.31 16 48 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -32.05 388.62 -11.72 -43.76 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.44 Total: 8.11 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -5.58 Total: -26.62 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.18 Total: -31.26 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.70 Total: -13.15 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.05 -11.72 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296794530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.364 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds