Wall clock time and date at job start Wed Apr 1 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48498 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46952 * 60.00841 * 3 2 1 6 6 H 1.48498 * 109.47179 * 300.00060 * 3 2 1 7 7 C 1.39959 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00208 * 155.37885 * 7 2 1 9 9 C 1.41073 * 120.00051 * 335.36871 * 7 2 1 10 10 C 1.40735 * 120.29964 * 329.89539 * 9 7 2 11 11 C 1.36459 * 119.94601 * 180.02562 * 10 9 7 12 12 C 1.38869 * 120.57221 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.61881 * 0.02562 * 12 11 10 14 14 C 1.38640 * 120.02911 * 359.67233 * 13 12 11 15 15 N 1.39132 * 120.28259 * 180.30128 * 14 13 12 16 16 C 1.34770 * 120.00029 * 330.83455 * 15 14 13 17 17 O 1.21282 * 119.99763 * 5.03588 * 16 15 14 18 18 C 1.50695 * 120.00069 * 185.03858 * 16 15 14 19 19 H 1.09005 * 110.85955 * 62.33524 * 18 16 15 20 20 C 1.54631 * 110.97091 * 298.54651 * 18 16 15 21 21 C 1.51280 * 104.19508 * 266.67906 * 20 18 16 22 22 O 1.21276 * 124.94164 * 163.71261 * 21 20 18 23 23 N 1.34428 * 110.11586 * 343.74667 * 21 20 18 24 24 C 1.46498 * 124.34697 * 179.57148 * 23 21 20 25 25 C 1.54271 * 110.03209 * 57.14407 * 24 23 21 26 26 C 1.54886 * 104.19247 * 217.10305 * 25 24 23 27 27 C 1.54888 * 102.75089 * 37.94276 * 26 25 24 28 28 C 1.53869 * 110.03337 * 299.97462 * 24 23 21 29 29 C 1.46755 * 111.29800 * 359.59059 * 23 21 20 30 30 H 0.96995 * 120.00249 * 174.26263 * 1 2 3 31 31 H 1.08005 * 120.03003 * 359.97438 * 10 9 7 32 32 H 1.07995 * 119.71588 * 179.97438 * 11 10 9 33 33 H 1.08006 * 119.69028 * 179.97438 * 12 11 10 34 34 H 1.07998 * 119.98191 * 179.97438 * 13 12 11 35 35 H 0.97001 * 119.99422 * 150.83769 * 15 14 13 36 36 H 1.08996 * 110.48227 * 25.35541 * 20 18 16 37 37 H 1.08995 * 110.48500 * 147.86937 * 20 18 16 38 38 H 1.09001 * 110.01182 * 178.58167 * 24 23 21 39 39 H 1.08996 * 110.48520 * 335.77835 * 25 24 23 40 40 H 1.08997 * 110.48542 * 98.42658 * 25 24 23 41 41 H 1.08998 * 110.75677 * 279.62848 * 26 25 24 42 42 H 1.09003 * 110.75921 * 156.25735 * 26 25 24 43 43 H 1.09004 * 110.48815 * 203.37655 * 27 26 25 44 44 H 1.08995 * 110.48900 * 80.73833 * 27 26 25 45 45 H 1.09000 * 110.03012 * 238.57055 * 28 24 23 46 46 H 1.08997 * 110.03435 * 0.02562 * 28 24 23 47 47 H 1.08999 * 110.25307 * 258.01303 * 29 23 21 48 48 H 1.09007 * 110.24522 * 136.01639 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8839 2.3963 1.2126 6 1 1.8838 2.3965 -1.2125 7 6 2.0083 -1.2121 -0.0005 8 1 3.0146 -1.2545 -0.3902 9 6 1.3992 -2.3785 0.5081 10 6 0.4436 -2.2893 1.5375 11 6 -0.1407 -3.4222 2.0245 12 6 0.1984 -4.6679 1.5128 13 6 1.1339 -4.7827 0.5017 14 6 1.7386 -3.6477 -0.0162 15 7 2.6763 -3.7567 -1.0382 16 6 3.4321 -4.8675 -1.1437 17 8 3.2329 -5.8088 -0.4054 18 6 4.5248 -4.9399 -2.1790 19 1 5.2839 -4.1793 -1.9960 20 6 3.9443 -4.8101 -3.6063 21 6 3.7232 -6.2399 -4.0483 22 8 3.0295 -6.5784 -4.9837 23 7 4.4070 -7.0807 -3.2529 24 6 4.4067 -8.5386 -3.3968 25 6 4.8810 -8.9300 -4.8116 26 6 4.0074 -10.1549 -5.1797 27 6 2.6297 -9.7860 -4.5756 28 6 2.9754 -9.0828 -3.2467 29 6 5.1534 -6.3504 -2.2217 30 1 -0.4850 -0.8358 -0.0840 31 1 0.1736 -1.3251 1.9423 32 1 -0.8731 -3.3495 2.8148 33 1 -0.2726 -5.5553 1.9091 34 1 1.3902 -5.7566 0.1116 35 1 2.7860 -3.0330 -1.6748 36 1 2.9996 -4.2668 -3.5859 37 1 4.6562 -4.3112 -4.2637 38 1 5.0576 -8.9876 -2.6465 39 1 4.7070 -8.1131 -5.5119 40 1 5.9359 -9.2041 -4.7981 41 1 4.4003 -11.0617 -4.7201 42 1 3.9369 -10.2681 -6.2615 43 1 2.0415 -10.6848 -4.3899 44 1 2.0921 -9.1074 -5.2378 45 1 2.9317 -9.7966 -2.4242 46 1 2.2808 -8.2622 -3.0673 47 1 6.2070 -6.2858 -2.4931 48 1 5.0416 -6.8425 -1.2555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331888621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:00 Heat of formation + Delta-G solvation = -60.634956 kcal Electronic energy + Delta-G solvation = -30327.360778 eV Core-core repulsion = 26345.933537 eV Total energy + Delta-G solvation = -3981.427241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08541 -39.50917 -37.70106 -37.31185 -35.97007 -34.02821 -33.88735 -32.19965 -29.42597 -28.81227 -28.76643 -27.71137 -27.41931 -25.15122 -23.57102 -21.68071 -21.43322 -20.79659 -20.74886 -19.44445 -18.74599 -18.07639 -17.35731 -16.98207 -16.32893 -15.94417 -15.55630 -14.93391 -14.78883 -14.64162 -14.42522 -14.19436 -13.96623 -13.70536 -13.47004 -13.41602 -13.25231 -12.74952 -12.57969 -12.34720 -12.14258 -11.82964 -11.71295 -11.65496 -11.55525 -11.41325 -11.19399 -11.17949 -11.07382 -10.99781 -10.75787 -10.61680 -10.50517 -10.40868 -9.73713 -9.64455 -9.44221 -9.08960 -8.87000 -8.70269 -7.64391 -7.40931 -6.99024 -4.52444 2.44259 2.57729 2.75086 2.92312 3.09846 3.17336 3.23454 3.26737 3.64421 3.94225 4.20245 4.24923 4.49132 4.51150 4.53898 4.71248 4.79788 4.97555 5.16038 5.27644 5.28962 5.34092 5.41804 5.42534 5.45098 5.50997 5.56204 5.67321 5.69820 5.74136 5.78415 5.91510 6.04694 6.14288 6.16325 6.30244 6.30469 6.42571 6.63827 6.74032 6.88982 7.07320 7.10357 7.35939 7.44653 7.66254 7.72899 7.85981 7.96740 8.17720 8.18144 8.27939 8.60155 8.72725 8.85740 9.99501 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002979 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.921408 B = 9396.858813 C =10313.706344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.041 3.959 3 Si 1.068 2.932 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.091 3.909 10 C -0.200 4.200 11 C -0.095 4.095 12 C -0.235 4.235 13 C -0.082 4.082 14 C 0.010 3.990 15 N -0.630 5.630 16 C 0.504 3.496 17 O -0.533 6.533 18 C -0.124 4.124 19 H 0.124 0.876 20 C -0.151 4.151 21 C 0.520 3.480 22 O -0.526 6.526 23 N -0.609 5.609 24 C 0.157 3.843 25 C -0.134 4.134 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.131 4.131 29 C 0.116 3.884 30 H 0.299 0.701 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.404 0.596 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -10.625 -7.727 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.892 3.108 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.114 4.114 12 C -0.255 4.255 13 C -0.102 4.102 14 C -0.083 4.083 15 N -0.271 5.271 16 C 0.290 3.710 17 O -0.411 6.411 18 C -0.146 4.146 19 H 0.142 0.858 20 C -0.191 4.191 21 C 0.307 3.693 22 O -0.402 6.402 23 N -0.343 5.343 24 C 0.054 3.946 25 C -0.173 4.173 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.170 4.170 29 C -0.007 4.007 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.240 0.760 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.464 -9.887 -7.654 16.304 hybrid contribution 0.244 -1.133 -0.080 1.162 sum 10.707 -11.019 -7.734 17.201 Atomic orbital electron populations 1.70403 1.08168 1.34293 1.29224 1.26931 0.95648 1.04095 0.91384 0.83595 0.75397 0.73648 0.78138 1.20225 1.19994 1.20431 1.20299 1.02501 0.93941 1.39441 0.90745 1.17461 0.92351 0.91040 0.90487 1.20722 1.03839 0.97268 1.00164 1.20422 0.98860 0.93225 0.98908 1.20317 1.05041 0.96022 1.04118 1.20919 0.94955 0.97338 0.96975 1.17691 0.99698 0.94646 0.96313 1.42806 1.35772 1.18769 1.29722 1.20109 0.82648 0.83379 0.84904 1.90615 1.69433 1.36518 1.44538 1.22314 0.98432 0.99582 0.94230 0.85768 1.22424 1.04680 0.96357 0.95636 1.20692 0.78621 0.88120 0.81831 1.90699 1.38882 1.81647 1.28985 1.48374 1.48085 1.05988 1.31860 1.21633 0.97350 0.77999 0.97594 1.22735 0.99019 0.98969 0.96533 1.22402 0.95559 0.97172 1.00571 1.22296 0.97016 0.99777 0.96657 1.22469 0.96097 1.00473 0.97942 1.22022 0.94761 0.90598 0.93349 0.88746 0.87605 0.89158 0.88993 0.86259 0.75984 0.87532 0.86802 0.89105 0.90221 0.91624 0.91634 0.91544 0.91995 0.90886 0.91357 0.91009 0.90489 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.18 12.48 55.55 0.69 -19.49 16 2 C 0.04 0.98 4.92 -17.32 -0.09 0.90 16 3 Si 1.07 20.34 30.00 -169.99 -5.10 15.24 16 4 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.53 -12.86 8.21 -37.86 -0.31 -13.18 16 8 H 0.07 1.70 7.47 -52.49 -0.39 1.31 16 9 C 0.09 2.25 5.20 -106.65 -0.56 1.70 16 10 C -0.20 -4.95 7.94 -39.28 -0.31 -5.27 16 11 C -0.10 -2.19 9.97 -39.99 -0.40 -2.59 16 12 C -0.24 -5.37 10.04 -39.35 -0.39 -5.77 16 13 C -0.08 -1.93 8.75 -39.44 -0.35 -2.27 16 14 C 0.01 0.24 6.43 -83.17 -0.54 -0.30 16 15 N -0.63 -12.06 4.80 -9.48 -0.05 -12.11 16 16 C 0.50 8.66 7.03 -10.99 -0.08 8.58 16 17 O -0.53 -10.80 12.58 5.56 0.07 -10.73 16 18 C -0.12 -1.45 3.55 -90.14 -0.32 -1.77 16 19 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.15 -1.74 6.35 -26.74 -0.17 -1.91 16 21 C 0.52 7.36 6.85 -10.86 -0.07 7.29 16 22 O -0.53 -9.01 15.94 5.56 0.09 -8.92 16 23 N -0.61 -7.48 2.83 -163.58 -0.46 -7.94 16 24 C 0.16 1.75 3.55 -66.81 -0.24 1.51 16 25 C -0.13 -1.37 6.28 -25.07 -0.16 -1.53 16 26 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 27 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 28 C -0.13 -1.63 6.03 -25.62 -0.15 -1.78 16 29 C 0.12 1.25 6.69 -3.13 -0.02 1.22 16 30 H 0.30 7.83 6.84 -40.82 -0.28 7.55 16 31 H 0.11 2.68 6.83 -52.48 -0.36 2.33 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.12 2.81 5.75 -52.49 -0.30 2.51 16 35 H 0.40 7.00 7.43 -40.82 -0.30 6.70 16 36 H 0.11 1.35 7.40 -51.93 -0.38 0.97 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.08 0.99 6.42 -51.93 -0.33 0.66 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.12 7.38 -51.93 -0.38 0.74 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.20 6.94 -51.92 -0.36 0.84 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -30.10 381.38 -10.46 -40.56 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.96 Total: 15.59 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -4.49 Total: -17.95 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.19 Total: -39.54 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.65 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.10 Total: 15.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.10 -10.46 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331888621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.076 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds