Wall clock time and date at job start Wed Apr 1 2020 00:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99786 * 2 1 4 4 H 1.48500 * 109.47401 * 240.00244 * 3 2 1 5 5 H 1.48500 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47249 * 120.00337 * 3 2 1 7 7 C 1.38719 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00040 * 180.02562 * 7 2 1 9 9 O 1.34777 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.35568 * 117.00435 * 185.83904 * 9 7 2 11 11 C 1.39176 * 119.89690 * 6.61034 * 10 9 7 12 12 C 1.37593 * 120.10457 * 179.72360 * 11 10 9 13 13 C 1.40023 * 119.89572 * 0.25479 * 12 11 10 14 14 C 1.46961 * 120.09817 * 180.02562 * 13 12 11 15 15 C 1.35030 * 119.99942 * 131.82815 * 14 13 12 16 16 C 1.46244 * 120.00045 * 349.07504 * 15 14 13 17 17 O 1.21725 * 120.00105 * 352.74327 * 16 15 14 18 18 N 1.34771 * 120.00487 * 172.74097 * 16 15 14 19 19 C 1.46897 * 120.49853 * 354.09016 * 18 16 15 20 20 C 1.53805 * 108.50709 * 124.32411 * 19 18 16 21 21 C 1.52667 * 109.10074 * 52.63356 * 20 19 18 22 22 C 1.53504 * 113.57833 * 170.99758 * 21 20 19 23 23 C 1.54004 * 86.19565 * 269.11162 * 22 21 20 24 24 N 1.47461 * 113.63262 * 74.03169 * 21 20 19 25 25 C 1.52656 * 113.20946 * 302.44410 * 21 20 19 26 26 C 1.46895 * 120.50697 * 174.35848 * 18 16 15 27 27 C 1.40017 * 119.79889 * 0.02562 * 13 12 11 28 28 C 1.37595 * 119.90128 * 0.02562 * 27 13 12 29 29 H 0.96996 * 119.99978 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.94773 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.05456 * 180.28193 * 12 11 10 32 32 H 1.08002 * 120.00208 * 311.82044 * 14 13 12 33 33 H 1.08004 * 119.99702 * 169.06764 * 15 14 13 34 34 H 1.08997 * 109.59054 * 244.15467 * 19 18 16 35 35 H 1.09005 * 109.59148 * 4.58064 * 19 18 16 36 36 H 1.08997 * 109.66654 * 292.67748 * 20 19 18 37 37 H 1.08995 * 109.44626 * 172.45024 * 20 19 18 38 38 H 1.08996 * 113.75828 * 23.43285 * 22 21 20 39 39 H 1.09000 * 113.75309 * 154.79050 * 22 21 20 40 40 H 1.09006 * 113.74934 * 90.95305 * 23 22 21 41 41 H 1.08999 * 113.74958 * 222.16356 * 23 22 21 42 42 H 1.00897 * 110.99882 * 202.72653 * 24 21 20 43 43 H 1.09003 * 109.52387 * 297.51262 * 25 21 20 44 44 H 1.08998 * 109.52337 * 177.32185 * 25 21 20 45 45 H 1.09002 * 109.58713 * 355.41809 * 26 18 16 46 46 H 1.09005 * 109.58564 * 115.70036 * 26 18 16 47 47 H 1.08007 * 120.05138 * 179.97438 * 27 13 12 48 48 H 1.07994 * 119.95361 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0088 -1.2013 -0.0005 8 1 3.0888 -1.2013 -0.0001 9 8 1.3349 -2.3686 -0.0005 10 6 2.0679 -3.5024 0.1218 11 6 3.4335 -3.4215 0.3777 12 6 4.1804 -4.5696 0.5083 13 6 3.5655 -5.8209 0.3781 14 6 4.3589 -7.0500 0.5173 15 6 3.9198 -8.0508 1.3104 16 6 2.7901 -7.8274 2.2119 17 8 2.3302 -6.7083 2.3456 18 7 2.2581 -8.8605 2.8945 19 6 2.7172 -10.2336 2.6461 20 6 3.1847 -10.8408 3.9796 21 6 2.0765 -10.6805 5.0174 22 6 2.3434 -11.4418 6.3233 23 6 1.5899 -12.6166 5.6723 24 7 0.9404 -11.5986 4.8157 25 6 1.6589 -9.2279 5.2320 26 6 1.2064 -8.6312 3.8941 27 6 2.1924 -5.8973 0.1148 28 6 1.4536 -4.7439 -0.0153 29 1 -0.4850 0.8400 0.0004 30 1 3.9068 -2.4560 0.4788 31 1 5.2392 -4.5059 0.7114 32 1 5.2931 -7.1530 -0.0148 33 1 4.4029 -9.0162 1.2789 34 1 1.8970 -10.8252 2.2394 35 1 3.5462 -10.2195 1.9385 36 1 4.0821 -10.3260 4.3225 37 1 3.4021 -11.8997 3.8398 38 1 3.3987 -11.6443 6.5058 39 1 1.8341 -11.0197 7.1896 40 1 2.2360 -13.3033 5.1251 41 1 0.9036 -13.1266 6.3483 42 1 0.1039 -11.2399 5.2512 43 1 2.5050 -8.6587 5.6171 44 1 0.8361 -9.1871 5.9457 45 1 1.0391 -7.5603 4.0094 46 1 0.2834 -9.1124 3.5703 47 1 1.7140 -6.8603 0.0131 48 1 0.3946 -4.8018 -0.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493190521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:53 Heat of formation + Delta-G solvation = 34.606351 kcal Electronic energy + Delta-G solvation = -29346.351792 eV Core-core repulsion = 25369.054524 eV Total energy + Delta-G solvation = -3977.297268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07241 -39.56411 -38.67786 -36.72079 -35.72127 -33.17499 -32.18807 -31.50925 -30.98660 -30.07541 -28.05625 -27.57962 -25.62390 -25.15360 -23.88311 -23.12208 -21.86434 -21.60350 -20.51551 -19.41093 -18.25384 -17.85425 -17.43093 -16.74925 -16.11139 -15.69113 -15.26483 -15.13180 -14.80020 -14.58244 -14.51779 -14.20457 -13.87305 -13.61167 -13.58419 -13.43925 -13.21641 -13.14952 -12.78015 -12.51394 -12.50144 -12.27893 -12.16163 -11.82033 -11.69600 -11.65307 -11.46766 -11.29841 -10.97028 -10.92879 -10.61012 -10.56283 -10.49774 -10.35841 -9.45269 -9.34019 -9.11565 -8.88761 -8.67698 -8.49398 -7.91231 -6.84270 -6.42082 -3.98062 1.32190 2.45437 2.69361 3.13614 3.15659 3.17886 3.19497 3.51629 3.67127 4.00128 4.03268 4.21025 4.47023 4.71510 4.77972 4.81867 4.89695 4.96671 5.07177 5.10581 5.14658 5.18529 5.21298 5.30032 5.35970 5.38176 5.44606 5.52293 5.57666 5.64331 5.70870 5.77522 5.79211 5.81657 5.88408 5.89786 6.08002 6.28658 6.35246 6.45435 6.58812 6.69319 6.83293 6.94814 7.07447 7.15519 7.39107 7.47668 7.54130 7.62117 7.96242 8.04299 8.56748 9.03489 9.76459 10.75899 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002166 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.115546 B =12926.741803 C =13553.888340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.246 4.246 12 C -0.045 4.045 13 C -0.180 4.180 14 C 0.024 3.976 15 C -0.263 4.263 16 C 0.541 3.459 17 O -0.511 6.511 18 N -0.616 5.616 19 C 0.115 3.885 20 C -0.102 4.102 21 C 0.078 3.922 22 C -0.184 4.184 23 C 0.016 3.984 24 N -0.649 5.649 25 C -0.129 4.129 26 C 0.119 3.881 27 C 0.001 3.999 28 C -0.199 4.199 29 H 0.271 0.729 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.337 0.663 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -24.591 9.506 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.114 3.886 11 C -0.265 4.265 12 C -0.063 4.063 13 C -0.181 4.181 14 C 0.004 3.996 15 C -0.284 4.284 16 C 0.333 3.667 17 O -0.387 6.387 18 N -0.351 5.351 19 C -0.008 4.008 20 C -0.141 4.141 21 C -0.013 4.013 22 C -0.222 4.222 23 C -0.113 4.113 24 N -0.278 5.278 25 C -0.168 4.168 26 C -0.004 4.004 27 C -0.018 4.018 28 C -0.218 4.218 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.119 0.881 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.548 -24.009 8.739 26.376 hybrid contribution 0.510 0.878 1.341 1.682 sum 7.057 -23.131 10.081 26.201 Atomic orbital electron populations 1.70016 1.06005 1.27797 1.45712 1.25320 0.95842 0.98886 0.96564 0.85776 0.78700 0.79734 0.79194 1.19461 1.20293 1.19503 1.21318 0.91814 0.80873 1.52551 0.89055 1.83926 1.34626 1.11648 1.77458 1.19531 0.90342 0.87710 0.91028 1.20956 0.94393 0.98662 1.12501 1.20707 0.97842 0.91380 0.96393 1.18282 0.93767 0.91871 1.14208 1.22363 0.95261 0.91449 0.90482 1.22760 1.02258 1.00418 1.02930 1.18495 0.83077 0.84136 0.80991 1.90991 1.60981 1.22310 1.64445 1.47991 1.39630 1.06786 1.40703 1.21754 1.00225 0.82371 0.96465 1.21665 0.96316 1.01421 0.94669 1.22087 0.93025 0.92486 0.93715 1.24575 1.02292 0.97102 0.98263 1.23533 0.97752 0.95169 0.94892 1.65071 1.04126 1.07651 1.50918 1.22051 1.01972 0.94663 0.98105 1.21388 0.89977 1.02458 0.86617 1.20422 0.91766 0.96088 0.93508 1.20003 0.99708 0.90022 1.12052 0.91950 0.85699 0.87680 0.86081 0.85883 0.90810 0.89486 0.90956 0.90516 0.91195 0.89917 0.88709 0.91108 0.84682 0.90643 0.90854 0.88804 0.91601 0.88127 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.22 9.42 30.91 0.29 -10.93 16 8 H 0.09 2.43 5.30 -52.49 -0.28 2.15 16 9 O -0.17 -5.19 9.74 0.76 0.01 -5.18 16 10 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 11 C -0.25 -5.71 9.10 -39.47 -0.36 -6.07 16 12 C -0.04 -0.89 9.78 -39.15 -0.38 -1.27 16 13 C -0.18 -3.39 4.34 -105.03 -0.46 -3.85 16 14 C 0.02 0.34 9.77 -37.19 -0.36 -0.02 16 15 C -0.26 -3.41 9.20 -37.51 -0.35 -3.76 16 16 C 0.54 8.34 6.80 -13.05 -0.09 8.25 16 17 O -0.51 -10.24 11.90 5.17 0.06 -10.18 16 18 N -0.62 -7.47 2.93 -174.06 -0.51 -7.98 16 19 C 0.12 1.02 6.39 -3.41 -0.02 1.00 16 20 C -0.10 -0.76 5.44 -26.48 -0.14 -0.90 16 21 C 0.08 0.58 0.93 -131.43 -0.12 0.46 16 22 C -0.18 -1.11 7.42 -25.98 -0.19 -1.31 16 23 C 0.02 0.09 8.53 -2.71 -0.02 0.07 16 24 N -0.65 -4.74 8.28 -103.69 -0.86 -5.60 16 25 C -0.13 -1.13 5.30 -26.74 -0.14 -1.27 16 26 C 0.12 1.37 6.43 -3.66 -0.02 1.34 16 27 C 0.00 0.01 6.77 -39.15 -0.27 -0.25 16 28 C -0.20 -4.64 9.97 -39.47 -0.39 -5.03 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 30 H 0.13 2.87 5.72 -52.48 -0.30 2.57 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.16 5.94 -52.48 -0.31 0.84 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.66 5.31 -51.93 -0.28 0.39 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.48 7.43 -51.93 -0.39 0.10 16 38 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.09 0.52 7.72 -51.93 -0.40 0.12 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.34 2.26 8.47 -39.29 -0.33 1.93 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 45 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.88 7.45 -52.48 -0.39 1.49 16 48 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -34.05 382.88 -10.00 -44.05 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.81 Total: 6.71 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.39 Total: -18.46 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.61 Total: -38.63 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.07 Total: -15.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.05 -10.00 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493190521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.652 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds