Wall clock time and date at job start Wed Apr 1 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47184 * 270.00673 * 3 2 1 5 5 H 1.48504 * 109.46891 * 30.00381 * 3 2 1 6 6 H 1.48498 * 109.47151 * 150.00579 * 3 2 1 7 7 C 1.38719 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 359.97438 * 7 2 1 9 9 O 1.34784 * 119.99910 * 179.97438 * 7 2 1 10 10 C 1.35568 * 116.99995 * 185.05671 * 9 7 2 11 11 C 1.39179 * 119.89938 * 174.13730 * 10 9 7 12 12 C 1.37598 * 120.10233 * 179.76869 * 11 10 9 13 13 C 1.40027 * 119.89548 * 0.48287 * 12 11 10 14 14 C 1.46963 * 120.09731 * 179.78794 * 13 12 11 15 15 C 1.35018 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.46263 * 119.99644 * 179.97438 * 15 14 13 17 17 O 1.21718 * 120.00036 * 5.25253 * 16 15 14 18 18 N 1.34772 * 119.99825 * 185.25365 * 16 15 14 19 19 C 1.46564 * 119.59840 * 174.75513 * 18 16 15 20 20 C 1.53643 * 111.04214 * 226.89336 * 19 18 16 21 21 C 1.51527 * 107.13877 * 309.38223 * 20 19 18 22 22 H 1.09000 * 110.25599 * 305.67207 * 21 20 19 23 23 C 1.52400 * 117.06819 * 179.09540 * 21 20 19 24 24 N 1.48605 * 105.88822 * 214.67319 * 23 21 20 25 25 C 1.49017 * 108.30748 * 3.05871 * 24 23 21 26 26 C 1.53175 * 103.48391 * 24.38807 * 25 24 23 27 27 H 1.08994 * 111.41660 * 76.58642 * 26 25 24 28 28 C 1.47851 * 119.59681 * 355.01956 * 18 16 15 29 29 C 1.40020 * 119.79843 * 359.77275 * 13 12 11 30 30 C 1.37596 * 119.89873 * 359.97438 * 29 13 12 31 31 H 0.97000 * 120.00173 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.94744 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.05142 * 180.28206 * 12 11 10 34 34 H 1.08002 * 119.99742 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.99940 * 359.97438 * 15 14 13 36 36 H 1.08994 * 109.20260 * 347.32250 * 19 18 16 37 37 H 1.08991 * 109.20718 * 106.62820 * 19 18 16 38 38 H 1.09008 * 110.01072 * 189.90976 * 20 19 18 39 39 H 1.08991 * 109.78652 * 68.73440 * 20 19 18 40 40 H 1.08998 * 110.17319 * 333.78086 * 23 21 20 41 41 H 1.09000 * 110.16950 * 95.50201 * 23 21 20 42 42 H 1.00899 * 110.99927 * 125.15164 * 24 23 21 43 43 H 1.09001 * 110.61793 * 265.88484 * 25 24 23 44 44 H 1.09006 * 110.61735 * 142.88585 * 25 24 23 45 45 H 1.08998 * 110.12268 * 247.60012 * 28 18 16 46 46 H 1.08998 * 110.11996 * 9.33002 * 28 18 16 47 47 H 1.08004 * 120.04846 * 180.02562 * 29 13 12 48 48 H 1.08003 * 119.95029 * 180.02562 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0087 -1.2013 -0.0005 8 1 1.4687 -2.1367 -0.0005 9 8 3.3565 -1.2013 -0.0011 10 6 3.9720 -2.4045 -0.1080 11 6 5.3563 -2.4665 -0.2378 12 6 5.9857 -3.6857 -0.3419 13 6 5.2304 -4.8646 -0.3273 14 6 5.8976 -6.1689 -0.4429 15 6 7.2409 -6.2317 -0.5639 16 6 7.9050 -7.5298 -0.6783 17 8 7.2421 -8.5473 -0.7608 18 7 9.2508 -7.5993 -0.6925 19 6 9.9081 -8.9093 -0.6910 20 6 11.0427 -8.9561 0.3440 21 6 11.9139 -7.7392 0.1068 22 1 12.2420 -7.7067 -0.9321 23 6 13.1086 -7.5503 1.0340 24 7 13.2518 -6.0828 1.2192 25 6 12.1382 -5.4086 0.4938 26 6 11.0503 -6.4850 0.4297 27 1 10.5421 -6.5947 1.3876 28 6 10.0463 -6.3531 -0.7034 29 6 3.8374 -4.7970 -0.2019 30 6 3.2171 -3.5736 -0.0931 31 1 -0.4850 0.8400 0.0004 32 1 5.9377 -1.5566 -0.2526 33 1 7.0604 -3.7330 -0.4380 34 1 5.3135 -7.0772 -0.4310 35 1 7.8250 -5.3234 -0.5762 36 1 9.1738 -9.6785 -0.4521 37 1 10.3214 -9.1042 -1.6805 38 1 11.6300 -9.8650 0.2128 39 1 10.6255 -8.9240 1.3504 40 1 12.9204 -8.0334 1.9927 41 1 14.0082 -7.9619 0.5764 42 1 13.2450 -5.8395 2.1984 43 1 12.4526 -5.1202 -0.5093 44 1 11.7869 -4.5404 1.0515 45 1 10.5667 -6.2487 -1.6554 46 1 9.3986 -5.4933 -0.5323 47 1 3.2509 -5.7038 -0.1898 48 1 2.1428 -3.5205 0.0040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493386821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:56 Heat of formation + Delta-G solvation = -6.858891 kcal Electronic energy + Delta-G solvation = -28545.705540 eV Core-core repulsion = 24566.610204 eV Total energy + Delta-G solvation = -3979.095336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86459 -39.42713 -38.98745 -37.10043 -35.84036 -33.53501 -32.76425 -32.37555 -30.98351 -30.56174 -28.92134 -27.98934 -25.74559 -25.12912 -23.99053 -22.47723 -22.15589 -21.44339 -20.88919 -20.05810 -18.77203 -17.97436 -17.55845 -17.23656 -16.68383 -16.09795 -15.67074 -15.23436 -15.03059 -14.98992 -14.55363 -14.14196 -14.07606 -13.97206 -13.84805 -13.57815 -13.51094 -13.22722 -12.89121 -12.85422 -12.68603 -12.54949 -12.43193 -12.05072 -11.90058 -11.71682 -11.54195 -11.26526 -11.21267 -11.07630 -11.03971 -10.80163 -10.60819 -10.29801 -9.77421 -9.68223 -9.57292 -9.02237 -8.95557 -8.79859 -8.50045 -7.27129 -6.62385 -4.26208 0.94966 2.00516 2.43207 2.81263 3.10195 3.14205 3.27169 3.44312 3.71533 3.88889 4.06934 4.18915 4.33537 4.40064 4.59896 4.62385 4.75508 4.81762 4.90417 4.91197 4.92719 4.98930 5.02835 5.12726 5.19164 5.30719 5.36873 5.40671 5.46577 5.48346 5.49018 5.56078 5.58165 5.64853 5.69162 5.91317 5.94468 5.99693 6.23370 6.26619 6.26991 6.47235 6.49794 6.64457 6.88404 6.89450 7.06034 7.12350 7.28947 7.38975 7.60443 7.81850 8.20664 8.70758 9.30738 10.43788 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.001996 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.282357 B =14022.079587 C =15376.909811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.202 6.202 10 C 0.174 3.826 11 C -0.199 4.199 12 C -0.045 4.045 13 C -0.190 4.190 14 C 0.037 3.963 15 C -0.283 4.283 16 C 0.556 3.444 17 O -0.557 6.557 18 N -0.616 5.616 19 C 0.115 3.885 20 C -0.118 4.118 21 C -0.112 4.112 22 H 0.081 0.919 23 C 0.054 3.946 24 N -0.686 5.686 25 C 0.056 3.944 26 C -0.142 4.142 27 H 0.084 0.916 28 C 0.122 3.878 29 C -0.036 4.036 30 C -0.230 4.230 31 H 0.283 0.717 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.339 0.661 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.481 -12.717 0.854 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.128 0.872 9 O -0.104 6.104 10 C 0.119 3.881 11 C -0.218 4.218 12 C -0.063 4.063 13 C -0.191 4.191 14 C 0.017 3.983 15 C -0.303 4.303 16 C 0.350 3.650 17 O -0.437 6.437 18 N -0.349 5.349 19 C -0.008 4.008 20 C -0.157 4.157 21 C -0.131 4.131 22 H 0.099 0.901 23 C -0.075 4.075 24 N -0.314 5.314 25 C -0.073 4.073 26 C -0.162 4.162 27 H 0.102 0.898 28 C -0.001 4.001 29 C -0.055 4.055 30 C -0.249 4.249 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.154 0.846 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.135 0.865 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.500 -12.765 0.317 26.746 hybrid contribution -0.597 0.505 0.598 0.985 sum 22.903 -12.260 0.916 25.994 Atomic orbital electron populations 1.69615 1.05705 1.29012 1.45839 1.24547 0.95093 0.99124 0.95202 0.86153 0.80366 0.81074 0.79208 1.19616 1.20506 1.18200 1.20878 0.76621 0.96929 1.52243 0.87186 1.83503 1.22978 1.26202 1.77762 1.19359 0.91758 0.85350 0.91641 1.20140 0.91850 0.98000 1.11833 1.20853 0.98400 0.91084 0.95992 1.18518 0.93404 0.91963 1.15207 1.22325 0.93910 0.96337 0.85683 1.22568 0.95788 0.95931 1.16060 1.18454 0.81329 0.89948 0.75309 1.90769 1.64295 1.37396 1.51259 1.48046 1.05727 1.06410 1.74732 1.21401 0.95327 0.85527 0.98573 1.21650 0.96216 0.97940 0.99893 1.22078 0.94639 0.95462 1.00926 0.90052 1.22353 0.97594 0.88769 0.98765 1.62419 1.45725 1.06389 1.16821 1.22646 0.88542 0.95719 1.00409 1.23001 0.96532 0.96742 0.99954 0.89765 1.21644 0.93453 0.87193 0.97802 1.21044 0.93057 0.97084 0.94290 1.21224 1.01394 0.91676 1.10571 0.90632 0.86099 0.86403 0.85822 0.85553 0.89037 0.92127 0.90320 0.91339 0.92901 0.90450 0.84555 0.89956 0.90829 0.90924 0.88595 0.86522 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.76 13.96 55.48 0.77 -22.99 16 2 C 0.07 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 20.43 28.62 -169.99 -4.86 15.56 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.39 -10.41 9.94 30.91 0.31 -10.10 16 8 H 0.11 2.98 5.41 -52.49 -0.28 2.70 16 9 O -0.20 -4.98 8.57 0.74 0.01 -4.98 16 10 C 0.17 3.73 6.66 -38.88 -0.26 3.47 16 11 C -0.20 -3.61 9.97 -39.47 -0.39 -4.00 16 12 C -0.05 -0.70 9.40 -39.14 -0.37 -1.07 16 13 C -0.19 -3.05 5.87 -105.03 -0.62 -3.67 16 14 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 15 C -0.28 -3.68 8.71 -37.50 -0.33 -4.01 16 16 C 0.56 7.68 7.58 -13.04 -0.10 7.58 16 17 O -0.56 -9.57 15.60 5.17 0.08 -9.49 16 18 N -0.62 -6.46 3.01 -174.47 -0.53 -6.98 16 19 C 0.11 1.04 6.28 -3.67 -0.02 1.02 16 20 C -0.12 -0.80 5.79 -27.14 -0.16 -0.96 16 21 C -0.11 -0.72 2.29 -90.25 -0.21 -0.92 16 22 H 0.08 0.55 7.98 -51.93 -0.41 0.14 16 23 C 0.05 0.33 7.29 -3.19 -0.02 0.31 16 24 N -0.69 -4.57 7.47 -111.07 -0.83 -5.40 16 25 C 0.06 0.35 7.20 -2.56 -0.02 0.33 16 26 C -0.14 -0.97 2.71 -89.64 -0.24 -1.21 16 27 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 28 C 0.12 0.95 5.96 -3.83 -0.02 0.93 16 29 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 30 C -0.23 -4.64 9.14 -39.47 -0.36 -5.00 16 31 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.12 1.45 6.16 -52.49 -0.32 1.12 16 34 H 0.12 1.81 7.53 -52.49 -0.40 1.42 16 35 H 0.13 1.37 3.80 -52.49 -0.20 1.17 16 36 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 40 H 0.05 0.30 8.07 -51.93 -0.42 -0.12 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.34 1.91 8.93 -39.29 -0.35 1.56 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 46 H 0.10 0.72 5.26 -51.93 -0.27 0.44 16 47 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 48 H 0.14 2.89 5.62 -52.48 -0.29 2.60 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -29.77 383.11 -9.89 -39.66 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.67 Total: 5.31 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.64 Total: -16.47 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.58 Total: -35.37 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.86 Total: 15.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.77 -9.89 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493386821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.802 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds